Wall clock time and date at job start Tue Mar 31 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34942 * 126.04042 * 2 1 4 4 C 1.35312 * 107.74961 * 180.14625 * 3 2 1 5 5 C 1.50701 * 126.04527 * 179.87266 * 4 3 2 6 6 H 1.09002 * 110.88153 * 3.59664 * 5 4 3 7 7 C 1.55122 * 110.94061 * 127.67004 * 5 4 3 8 8 N 1.47424 * 104.72412 * 155.29357 * 7 5 4 9 9 S 1.65601 * 125.65172 * 155.81831 * 8 7 5 10 10 O 1.42109 * 104.27730 * 153.61961 * 9 8 7 11 11 O 1.42099 * 104.27406 * 25.76340 * 9 8 7 12 12 C 1.81399 * 104.44938 * 269.69092 * 9 8 7 13 13 C 1.53002 * 109.47162 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.46919 * 180.02562 * 13 12 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47364 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46883 * 120.00040 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99850 * 18 16 14 22 22 C 1.47032 * 108.69957 * 335.55423 * 8 7 5 23 23 C 1.54324 * 107.26955 * 1.28533 * 22 8 7 24 24 C 1.53002 * 110.71587 * 140.55769 * 23 22 8 25 25 C 1.52999 * 110.72078 * 263.82704 * 23 22 8 26 26 C 1.39874 * 107.91893 * 359.61149 * 4 3 2 27 27 N 1.30840 * 108.20104 * 0.23871 * 26 4 3 28 28 H 1.09003 * 109.47551 * 270.31437 * 1 2 3 29 29 H 1.08999 * 109.47232 * 30.31074 * 1 2 3 30 30 H 1.09001 * 109.47471 * 150.30857 * 1 2 3 31 31 H 1.08005 * 126.12637 * 359.97438 * 3 2 1 32 32 H 1.08996 * 110.49851 * 36.45095 * 7 5 4 33 33 H 1.08995 * 110.34554 * 274.05546 * 7 5 4 34 34 H 1.09004 * 109.47089 * 59.99998 * 12 9 8 35 35 H 1.09000 * 109.47070 * 299.99993 * 12 9 8 36 36 H 1.09000 * 109.46497 * 60.00298 * 13 12 9 37 37 H 1.08999 * 109.46623 * 300.00362 * 13 12 9 38 38 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 39 39 H 1.08993 * 109.88186 * 120.70459 * 22 8 7 40 40 H 1.08997 * 109.87951 * 241.71694 * 22 8 7 41 41 H 1.09000 * 109.46918 * 61.45426 * 24 23 22 42 42 H 1.09001 * 109.46832 * 181.45396 * 24 23 22 43 43 H 1.09005 * 109.46789 * 301.45191 * 24 23 22 44 44 H 1.09005 * 109.46569 * 58.55239 * 25 23 22 45 45 H 1.08998 * 109.47132 * 178.54510 * 25 23 22 46 46 H 1.08993 * 109.47388 * 298.55049 * 25 23 22 47 47 H 1.07995 * 125.90048 * 180.26534 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0072 6 1 4.4912 2.5975 0.0568 7 6 5.7378 1.1497 1.1371 8 7 7.0630 1.6057 0.6796 9 16 8.3492 1.9695 1.6572 10 8 9.4877 1.7405 0.8382 11 8 8.1250 1.2013 2.8314 12 6 8.1638 3.7393 2.0092 13 6 9.3063 4.2013 2.9160 14 6 9.1519 5.6715 3.2089 15 1 8.3222 6.2214 2.7899 16 6 10.0706 6.3148 4.0111 17 7 11.0845 5.6465 4.5160 18 14 9.8796 8.1373 4.3736 19 1 8.6696 8.6548 3.6856 20 1 9.7410 8.3387 5.8384 21 1 11.0767 8.8673 3.8847 22 6 7.0555 1.6779 -0.7890 23 6 5.6422 1.2752 -1.2603 24 6 5.1929 2.1498 -2.4325 25 6 5.6001 -0.2061 -1.6409 26 6 3.5346 -0.7322 0.0037 27 7 2.2890 -1.1328 0.0057 28 1 -0.3634 0.0056 1.0276 29 1 -0.3634 0.8872 -0.5186 30 1 -0.3634 -0.8927 -0.5090 31 1 1.9281 2.1193 -0.0004 32 1 5.7374 0.0694 1.2816 33 1 5.4604 1.6569 2.0611 34 1 7.2108 3.9125 2.5093 35 1 8.1912 4.3004 1.0751 36 1 10.2594 4.0282 2.4163 37 1 9.2784 3.6402 3.8500 38 1 11.1838 4.7001 4.3275 39 1 7.2779 2.6951 -1.1112 40 1 7.7952 0.9896 -1.1977 41 1 5.8740 2.0100 -3.2720 42 1 4.1840 1.8658 -2.7318 43 1 5.2007 3.1966 -2.1286 44 1 5.8933 -0.8103 -0.7822 45 1 4.5886 -0.4744 -1.9455 46 1 6.2886 -0.3890 -2.4659 47 1 4.4053 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585114564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:32 Heat of formation + Delta-G solvation = -0.162366 kcal Electronic energy + Delta-G solvation = -28406.595662 eV Core-core repulsion = 24525.120228 eV Total energy + Delta-G solvation = -3881.475434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69358 -39.30086 -36.65442 -35.49438 -34.24073 -33.98218 -33.17463 -31.49232 -31.00366 -28.97105 -27.72806 -26.32707 -25.99365 -25.02501 -22.89921 -21.80593 -21.24579 -20.53654 -19.19936 -18.62601 -17.56235 -16.87273 -16.63066 -16.16777 -15.75657 -15.64828 -15.12730 -15.05898 -14.32535 -13.93293 -13.81303 -13.77612 -13.64959 -13.44550 -13.19271 -13.00721 -12.91098 -12.81524 -12.71673 -12.46141 -12.10576 -12.00858 -11.85961 -11.67514 -11.60742 -11.32025 -11.04758 -11.00753 -10.88109 -10.71740 -10.62145 -10.51840 -10.47867 -10.28639 -10.12219 -9.62130 -8.98675 -8.58690 -8.51877 -8.44855 -6.46898 -4.19546 0.67782 1.62875 2.25200 2.52344 3.01499 3.38687 3.43289 3.55678 4.14040 4.21112 4.28267 4.42861 4.47585 4.52145 4.64254 4.71005 4.75859 4.84789 5.00983 5.02651 5.12716 5.18906 5.22443 5.28949 5.42726 5.45850 5.50758 5.54179 5.55789 5.60103 5.63696 5.73352 5.79846 5.81570 5.96088 6.00434 6.08624 6.18222 6.25957 6.36551 6.38599 6.49800 6.72331 6.98319 7.08520 7.44613 7.97717 8.31593 8.73796 9.52866 10.93079 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.002761 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.586601 B =10140.446888 C =10784.974355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.060 3.940 4 C -0.219 4.219 5 C -0.013 4.013 6 H 0.092 0.908 7 C 0.132 3.868 8 N -1.018 6.018 9 S 2.605 3.395 10 O -0.962 6.962 11 O -0.961 6.961 12 C -0.583 4.583 13 C 0.014 3.986 14 C -0.599 4.599 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.907 5.907 18 Si 1.079 2.921 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.128 3.872 23 C -0.064 4.064 24 C -0.134 4.134 25 C -0.140 4.140 26 C 0.057 3.943 27 N -0.301 5.301 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.575 -9.629 -14.474 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.086 4.086 4 C -0.231 4.231 5 C -0.034 4.034 6 H 0.110 0.890 7 C 0.006 3.994 8 N -0.854 5.854 9 S 2.705 3.295 10 O -0.952 6.952 11 O -0.952 6.952 12 C -0.716 4.716 13 C -0.025 4.025 14 C -0.638 4.638 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.542 5.542 18 Si 0.906 3.094 19 H -0.214 1.214 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.003 3.997 23 C -0.066 4.066 24 C -0.192 4.192 25 C -0.197 4.197 26 C -0.129 4.129 27 N -0.122 5.122 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -21.126 -10.021 -13.341 26.920 hybrid contribution -0.606 0.065 -0.875 1.066 sum -21.731 -9.956 -14.215 27.811 Atomic orbital electron populations 1.21826 0.74353 1.04337 1.03341 1.48420 1.06542 1.03902 1.57389 1.22307 0.90754 0.93362 1.02205 1.19722 0.93511 0.93707 1.16143 1.20745 0.90323 0.98227 0.94123 0.88995 1.22007 0.80673 0.99828 0.96856 1.58826 1.27473 1.82804 1.16291 1.05311 0.72374 0.78759 0.73099 1.93538 1.47982 1.85525 1.68188 1.93544 1.84758 1.68355 1.48532 1.30377 1.10002 1.21057 1.10159 1.19076 0.90653 0.99572 0.93177 1.21894 1.14071 0.93002 1.34853 0.92607 1.25978 0.92748 1.06804 0.93421 1.70716 1.29439 1.11152 1.42935 0.83408 0.75657 0.73772 0.76518 1.21446 1.21131 1.21124 1.21827 0.97011 1.01464 0.79447 1.21567 0.93609 0.96453 0.94953 1.21755 1.01243 0.99122 0.97050 1.22104 1.01946 0.94400 1.01257 1.24053 0.95097 0.94770 0.98979 1.77399 1.01684 1.08264 1.24817 0.90813 0.89585 0.89418 0.81013 0.91277 0.90615 0.86179 0.86161 0.95801 0.95808 0.91845 0.91518 0.90982 0.92303 0.92358 0.92195 0.92126 0.91709 0.92508 0.79813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.47 59.84 0.69 1.15 16 2 N -0.38 -3.24 4.01 -68.17 -0.27 -3.52 16 3 C 0.06 0.47 11.40 -17.23 -0.20 0.27 16 4 C -0.22 -1.97 4.63 -105.05 -0.49 -2.46 16 5 C -0.01 -0.12 2.81 -89.51 -0.25 -0.37 16 6 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 7 C 0.13 1.56 6.01 -2.41 -0.01 1.55 16 8 N -1.02 -14.08 3.62 -111.30 -0.40 -14.48 16 9 S 2.61 47.88 5.65 -107.50 -0.61 47.27 16 10 O -0.96 -20.22 17.60 -57.54 -1.01 -21.23 16 11 O -0.96 -20.29 17.60 -57.54 -1.01 -21.30 16 12 C -0.58 -11.39 6.12 37.16 0.23 -11.16 16 13 C 0.01 0.37 4.29 -27.88 -0.12 0.25 16 14 C -0.60 -16.86 9.11 -34.44 -0.31 -17.17 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 17 N -0.91 -27.89 13.65 55.43 0.76 -27.13 16 18 Si 1.08 25.00 29.90 -169.99 -5.08 19.92 16 19 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.13 1.48 6.07 -3.06 -0.02 1.46 16 23 C -0.06 -0.58 0.76 -152.67 -0.12 -0.69 16 24 C -0.13 -1.00 8.49 37.16 0.32 -0.69 16 25 C -0.14 -1.19 6.75 37.16 0.25 -0.94 16 26 C 0.06 0.57 8.56 -17.36 -0.15 0.42 16 27 N -0.30 -3.29 12.58 30.62 0.39 -2.91 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.07 0.80 6.92 -51.93 -0.36 0.45 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 36 H 0.02 0.64 8.00 -51.93 -0.42 0.22 16 37 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 38 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 39 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 40 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 44 H 0.06 0.53 5.85 -51.93 -0.30 0.23 16 45 H 0.06 0.54 6.16 -51.93 -0.32 0.22 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.19 1.61 5.91 -52.49 -0.31 1.30 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -37.61 386.84 -9.21 -46.81 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.50 Total: -1.22 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -0.28 Total: -28.05 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.47 Total: -48.04 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.03 Total: -42.53 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.61 Total: 47.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.61 -9.21 -46.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585114564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.649 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds