Wall clock time and date at job start Tue Mar 31 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.03904 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.88760 * 356.12196 * 5 4 3 7 7 C 1.54909 * 111.00259 * 232.19754 * 5 4 3 8 8 N 1.47430 * 104.82915 * 204.91387 * 7 5 4 9 9 S 1.65605 * 125.64487 * 204.17241 * 8 7 5 10 10 O 1.42097 * 104.27825 * 26.02597 * 9 8 7 11 11 O 1.42103 * 104.27229 * 153.87960 * 9 8 7 12 12 C 1.81395 * 104.44701 * 269.94924 * 9 8 7 13 13 C 1.53008 * 109.46914 * 180.02562 * 12 9 8 14 14 C 1.50700 * 109.47172 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99945 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99951 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00309 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47081 * 89.99716 * 18 16 14 20 20 H 1.48501 * 109.47457 * 210.00099 * 18 16 14 21 21 H 1.48501 * 109.46936 * 330.00154 * 18 16 14 22 22 C 1.47013 * 108.70275 * 24.13071 * 8 7 5 23 23 C 1.54332 * 107.27386 * 358.93947 * 22 8 7 24 24 C 1.52994 * 110.72003 * 219.44378 * 23 22 8 25 25 C 1.53000 * 110.72043 * 96.16737 * 23 22 8 26 26 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 27 27 N 1.30841 * 108.19911 * 359.73793 * 26 4 3 28 28 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 30 30 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 31 31 H 1.08004 * 126.13243 * 359.96418 * 3 2 1 32 32 H 1.08994 * 110.37122 * 323.75808 * 7 5 4 33 33 H 1.09005 * 110.36345 * 86.08118 * 7 5 4 34 34 H 1.09001 * 109.47864 * 300.00013 * 12 9 8 35 35 H 1.08999 * 109.47421 * 60.01056 * 12 9 8 36 36 H 1.09003 * 109.47229 * 300.00804 * 13 12 9 37 37 H 1.09006 * 109.46680 * 60.00198 * 13 12 9 38 38 H 0.97003 * 120.00084 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.88930 * 239.52070 * 22 8 7 40 40 H 1.09005 * 109.88197 * 118.35446 * 22 8 7 41 41 H 1.09002 * 109.47196 * 173.52265 * 24 23 22 42 42 H 1.09001 * 109.47290 * 293.52134 * 24 23 22 43 43 H 1.09002 * 109.47288 * 53.51965 * 24 23 22 44 44 H 1.09000 * 109.47468 * 306.47977 * 25 23 22 45 45 H 1.08999 * 109.47081 * 66.48090 * 25 23 22 46 46 H 1.08996 * 109.46727 * 186.47838 * 25 23 22 47 47 H 1.08002 * 125.89933 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.4913 2.5973 -0.0675 7 6 5.7365 1.1491 -1.1409 8 7 7.0634 1.6014 -0.6845 9 16 8.3497 1.9616 -1.6634 10 8 7.7557 2.3380 -2.8982 11 8 9.1170 2.8881 -0.9070 12 6 9.2396 0.3906 -1.8377 13 6 10.4649 0.5949 -2.7310 14 6 11.2039 -0.7103 -2.8764 15 1 10.8363 -1.5970 -2.3815 16 6 12.3494 -0.7724 -3.6412 17 7 12.9947 -1.9114 -3.7677 18 14 12.9849 0.7611 -4.4978 19 1 13.9230 1.4784 -3.5972 20 1 13.6936 0.3743 -5.7442 21 1 11.8434 1.6499 -4.8329 22 6 7.0552 1.6807 0.7835 23 6 5.6415 1.2810 1.2561 24 6 5.1920 2.1614 2.4238 25 6 5.5984 -0.1985 1.6438 26 6 3.5347 -0.7321 0.0003 27 7 2.2891 -1.1327 0.0053 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 1.9282 2.1194 -0.0005 32 1 5.7326 0.0686 -1.2841 33 1 5.4603 1.6561 -2.0655 34 1 9.5605 0.0437 -0.8554 35 1 8.5811 -0.3521 -2.2881 36 1 10.1445 0.9421 -3.7134 37 1 11.1234 1.3375 -2.2802 38 1 13.8008 -1.9550 -4.3054 39 1 7.2780 2.6993 1.1011 40 1 7.7925 0.9919 1.1961 41 1 4.1523 1.9410 2.6659 42 1 5.8180 1.9596 3.2930 43 1 5.2854 3.2109 2.1446 44 1 5.9765 -0.8016 0.8183 45 1 6.2177 -0.3611 2.5259 46 1 4.5705 -0.4867 1.8634 47 1 4.4055 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585114565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:36 Heat of formation + Delta-G solvation = 8.261031 kcal Electronic energy + Delta-G solvation = -28431.589856 eV Core-core repulsion = 24550.479688 eV Total energy + Delta-G solvation = -3881.110168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69201 -39.29230 -36.69315 -35.53496 -34.00494 -33.90284 -33.16340 -31.49240 -31.44907 -28.96347 -27.72139 -26.31884 -26.13295 -25.75035 -22.85810 -21.25118 -21.11268 -20.53308 -19.18925 -18.63854 -17.60754 -16.98383 -16.68434 -16.05908 -15.75574 -15.51743 -15.10103 -15.02852 -14.39423 -14.21472 -13.92099 -13.83725 -13.63380 -13.48362 -13.19005 -12.98612 -12.90645 -12.79341 -12.69868 -12.41939 -12.01542 -11.87867 -11.86750 -11.69204 -11.64131 -11.32995 -11.22983 -11.16498 -11.04389 -10.86792 -10.71399 -10.59823 -10.42027 -10.12854 -9.70174 -9.59777 -9.39442 -8.78549 -8.64428 -8.51894 -6.14665 -4.15743 0.65098 1.63699 2.26169 2.53643 2.97978 3.28114 3.35346 3.39792 4.14283 4.21408 4.25290 4.37645 4.43865 4.52444 4.64850 4.70945 4.76324 4.86303 5.01615 5.05492 5.14722 5.16894 5.20289 5.23087 5.42074 5.47039 5.51568 5.53074 5.55862 5.62084 5.68720 5.73942 5.81301 5.83977 5.96937 5.99866 6.10270 6.19162 6.27112 6.32090 6.39863 6.49620 6.73068 6.84346 6.96542 7.46074 7.56891 8.38776 8.86675 9.45063 10.97728 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.002784 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.228944 B =10056.359481 C =10509.727156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.059 3.941 4 C -0.219 4.219 5 C -0.009 4.009 6 H 0.089 0.911 7 C 0.124 3.876 8 N -1.017 6.017 9 S 2.604 3.396 10 O -0.962 6.962 11 O -0.962 6.962 12 C -0.583 4.583 13 C -0.007 4.007 14 C -0.518 4.518 15 H 0.078 0.922 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.128 3.872 23 C -0.065 4.065 24 C -0.134 4.134 25 C -0.144 4.144 26 C 0.058 3.942 27 N -0.300 5.300 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.382 6.650 12.590 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.087 4.087 4 C -0.231 4.231 5 C -0.030 4.030 6 H 0.108 0.892 7 C -0.001 4.001 8 N -0.853 5.853 9 S 2.704 3.296 10 O -0.953 6.953 11 O -0.953 6.953 12 C -0.716 4.716 13 C -0.046 4.046 14 C -0.557 4.557 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.695 3.305 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.186 1.186 22 C 0.002 3.998 23 C -0.066 4.066 24 C -0.191 4.191 25 C -0.201 4.201 26 C -0.128 4.128 27 N -0.121 5.121 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.189 0.811 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -25.958 6.459 12.094 29.357 hybrid contribution 1.017 0.658 -0.355 1.262 sum -24.942 7.117 11.739 28.470 Atomic orbital electron populations 1.21823 0.74379 1.04312 1.03332 1.48424 1.06537 1.03908 1.57411 1.22293 0.90777 0.93324 1.02329 1.19730 0.93493 0.93726 1.16160 1.20634 0.90289 0.98097 0.94023 0.89238 1.22051 0.80842 0.99552 0.97673 1.58755 1.25461 1.84559 1.16556 1.05282 0.73242 0.78085 0.73038 1.93537 1.75730 1.82114 1.43875 1.93538 1.70693 1.59832 1.71196 1.30343 1.11591 1.19508 1.10137 1.19413 0.91042 1.00217 0.93970 1.20850 1.09046 0.94116 1.31710 0.90403 1.24987 0.96243 0.96102 0.95803 1.69883 1.18312 1.25119 1.40076 0.86927 0.79905 0.83856 0.79785 1.19667 1.20764 1.18606 1.21841 0.96938 1.01683 0.79325 1.21574 0.93636 0.96493 0.94915 1.21751 1.01248 0.99026 0.97120 1.22155 1.02219 0.94313 1.01381 1.24045 0.95147 0.94726 0.98854 1.77417 1.01693 1.08184 1.24774 0.90810 0.89647 0.89399 0.81100 0.91431 0.89810 0.85697 0.85656 0.94983 0.95425 0.92399 0.90950 0.91421 0.92379 0.92295 0.92320 0.91960 0.92444 0.91479 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.20 4.01 -68.16 -0.27 -3.48 16 3 C 0.06 0.45 11.40 -17.22 -0.20 0.25 16 4 C -0.22 -1.93 4.61 -105.05 -0.48 -2.42 16 5 C -0.01 -0.08 2.80 -89.62 -0.25 -0.33 16 6 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 7 C 0.12 1.41 6.21 -2.53 -0.02 1.40 16 8 N -1.02 -13.47 3.62 -111.42 -0.40 -13.87 16 9 S 2.60 45.48 5.65 -107.50 -0.61 44.88 16 10 O -0.96 -19.20 17.28 -57.54 -0.99 -20.19 16 11 O -0.96 -19.12 17.60 -57.54 -1.01 -20.14 16 12 C -0.58 -10.87 6.12 37.16 0.23 -10.64 16 13 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 14 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 15 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 18 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 C 0.13 1.42 6.07 -3.06 -0.02 1.40 16 23 C -0.06 -0.56 0.76 -152.67 -0.12 -0.68 16 24 C -0.13 -0.98 8.52 37.15 0.32 -0.66 16 25 C -0.14 -1.18 6.76 37.16 0.25 -0.93 16 26 C 0.06 0.57 8.47 -17.36 -0.15 0.43 16 27 N -0.30 -3.29 12.58 30.62 0.39 -2.90 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.07 0.70 7.03 -51.93 -0.36 0.34 16 33 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 34 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 37 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 0.82 7.76 -51.93 -0.40 0.41 16 40 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 44 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.56 5.70 -51.93 -0.30 0.26 16 47 H 0.19 1.60 6.05 -52.49 -0.32 1.28 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -36.74 384.07 -8.82 -45.56 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.51 Total: -1.84 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.29 Total: -24.31 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.48 Total: -46.74 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -2.01 Total: -40.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 45.48 SS G_CDS: -0.61 Total: 44.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.74 -8.82 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585114565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.817 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds