Wall clock time and date at job start Tue Mar 31 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35247 * 126.07000 * 2 1 4 4 N 1.34955 * 107.86042 * 180.25918 * 3 2 1 5 5 C 1.46500 * 125.97987 * 179.70704 * 4 3 2 6 6 N 1.40078 * 108.05056 * 359.72473 * 4 3 2 7 7 C 1.31215 * 108.16577 * 359.97438 * 6 4 3 8 8 N 1.40197 * 125.96802 * 179.97438 * 7 6 4 9 9 C 1.34772 * 120.00544 * 0.02940 * 8 7 6 10 10 O 1.21594 * 119.99930 * 354.96543 * 9 8 7 11 11 N 1.34775 * 120.00133 * 174.96373 * 9 8 7 12 12 C 1.47239 * 121.34142 * 184.75927 * 11 9 8 13 13 C 1.52789 * 107.85443 * 115.95417 * 12 11 9 14 14 C 1.50571 * 110.88010 * 47.36446 * 13 12 11 15 15 C 1.41416 * 117.63120 * 160.36185 * 14 13 12 16 16 C 1.41395 * 119.96675 * 358.87479 * 15 14 13 17 17 H 1.08004 * 119.99995 * 330.10024 * 16 15 14 18 18 C 1.39941 * 119.99949 * 149.82627 * 16 15 14 19 19 N 1.30828 * 120.00071 * 350.44577 * 18 16 15 20 20 Si 1.86804 * 120.00095 * 170.44852 * 18 16 15 21 21 H 1.48506 * 109.47165 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46961 * 119.99725 * 20 18 16 23 23 H 1.48500 * 109.47298 * 239.99747 * 20 18 16 24 24 C 1.40404 * 120.06772 * 179.15126 * 15 14 13 25 25 C 1.37644 * 119.53832 * 359.61369 * 24 15 14 26 26 C 1.38334 * 119.99208 * 0.66864 * 25 24 15 27 27 C 1.37046 * 123.00058 * 339.81591 * 14 13 12 28 28 C 1.46662 * 121.34443 * 4.74052 * 11 9 8 29 29 H 1.08999 * 109.47234 * 270.20654 * 1 2 3 30 30 H 1.08999 * 109.46961 * 30.20472 * 1 2 3 31 31 H 1.09000 * 109.47475 * 150.20436 * 1 2 3 32 32 H 1.08007 * 126.06887 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.46557 * 269.99747 * 5 4 3 34 34 H 1.08998 * 109.47379 * 29.99158 * 5 4 3 35 35 H 1.08999 * 109.47535 * 149.99802 * 5 4 3 36 36 H 0.97005 * 119.99615 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.78747 * 356.36129 * 12 11 9 38 38 H 1.08999 * 109.78676 * 235.53571 * 12 11 9 39 39 H 1.09001 * 109.19563 * 287.00650 * 13 12 11 40 40 H 1.09003 * 109.15945 * 167.70569 * 13 12 11 41 41 H 0.97000 * 119.99842 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.22990 * 179.82715 * 24 15 14 43 43 H 1.08004 * 120.00589 * 180.41211 * 25 24 15 44 44 H 1.07998 * 119.48046 * 179.73046 * 26 25 24 45 45 H 1.09004 * 109.42957 * 344.43902 * 28 11 9 46 46 H 1.09002 * 109.43014 * 104.29026 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 7 3.5852 0.6715 -0.0058 5 6 4.7732 1.5287 -0.0139 6 7 3.5813 -0.7293 -0.0031 7 6 2.3335 -1.1349 0.0046 8 7 1.9012 -2.4686 0.0091 9 6 2.8036 -3.4696 0.0060 10 8 3.9892 -3.2189 -0.0931 11 7 2.3918 -4.7484 0.1127 12 6 3.3551 -5.8571 0.2166 13 6 3.1691 -6.5127 1.5840 14 6 1.7115 -6.7670 1.8634 15 6 1.3908 -7.7240 2.8540 16 6 2.4232 -8.4196 3.5245 17 1 3.3584 -8.6150 3.0208 18 6 2.2354 -8.8498 4.8429 19 7 1.1881 -8.4513 5.5181 20 14 3.4802 -9.9929 5.6387 21 1 4.5661 -10.2930 4.6711 22 1 4.0561 -9.3379 6.8406 23 1 2.8085 -11.2559 6.0371 24 6 0.0482 -7.9883 3.1682 25 6 -0.9497 -7.3045 2.5117 26 6 -0.6268 -6.3743 1.5400 27 6 0.7009 -6.1090 1.2125 28 6 0.9660 -5.0919 0.1304 29 1 -0.3634 0.0037 1.0276 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8918 -0.5106 32 1 1.9720 2.1212 -0.0004 33 1 5.0624 1.7389 -1.0437 34 1 4.5498 2.4642 0.4989 35 1 5.5913 1.0207 0.4967 36 1 0.9525 -2.6708 0.0145 37 1 4.3712 -5.4727 0.1269 38 1 3.1649 -6.5862 -0.5710 39 1 3.5723 -5.8555 2.3545 40 1 3.7083 -7.4599 1.6030 41 1 1.0577 -8.7498 6.4317 42 1 -0.1998 -8.7206 3.9223 43 1 -1.9849 -7.4970 2.7522 44 1 -1.4165 -5.8456 1.0269 45 1 0.3792 -4.1941 0.3250 46 1 0.6812 -5.5080 -0.8360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599804183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:32 Heat of formation + Delta-G solvation = 85.371711 kcal Electronic energy + Delta-G solvation = -29138.625976 eV Core-core repulsion = 25223.134289 eV Total energy + Delta-G solvation = -3915.491687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38555 -39.98113 -38.17038 -35.60077 -35.00464 -33.64115 -32.94073 -31.88619 -31.20121 -30.08417 -28.78940 -27.78081 -25.54360 -25.15833 -24.70796 -23.09755 -21.74372 -20.74454 -20.44909 -19.75124 -18.60416 -17.61462 -17.09411 -16.85245 -15.90123 -15.83596 -15.45978 -15.14834 -14.80972 -14.29804 -14.18133 -13.91414 -13.59565 -13.47713 -13.45170 -13.33876 -13.23906 -12.63200 -12.53260 -12.42255 -12.31285 -12.05900 -11.77981 -11.50223 -11.45516 -11.31520 -11.09840 -10.68469 -10.54398 -10.51409 -10.49869 -10.28492 -9.81017 -9.64143 -9.28625 -9.23292 -8.74020 -8.28248 -7.94451 -7.33255 -7.28710 -6.71648 -4.39827 1.88592 2.22332 2.65422 2.73054 2.83413 2.95427 3.07916 3.12664 3.16080 3.65972 3.93690 3.97999 4.46117 4.60551 4.69540 5.01805 5.12303 5.19626 5.29218 5.30582 5.43611 5.48735 5.58118 5.62115 5.72789 5.78738 5.84339 5.91463 5.99054 6.00067 6.11753 6.27724 6.31709 6.42245 6.61220 6.77492 6.89221 6.94019 6.98396 7.05839 7.13850 7.20184 7.30645 7.56535 7.69368 7.82014 7.97891 8.01350 8.16176 8.25935 8.60091 8.79308 8.86744 8.91933 10.22461 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002805 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.125499 B = 9978.856059 C =10698.125739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.261 4.261 3 C 0.067 3.933 4 N -0.381 5.381 5 C 0.108 3.892 6 N -0.273 5.273 7 C 0.322 3.678 8 N -0.651 5.651 9 C 0.706 3.294 10 O -0.554 6.554 11 N -0.617 5.617 12 C 0.131 3.869 13 C -0.070 4.070 14 C -0.163 4.163 15 C 0.111 3.889 16 C -0.461 4.461 17 H 0.080 0.920 18 C 0.073 3.927 19 N -0.803 5.803 20 Si 0.908 3.092 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.156 4.156 25 C -0.106 4.106 26 C -0.230 4.230 27 C -0.084 4.084 28 C 0.162 3.838 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.174 0.826 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.414 0.586 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.278 0.722 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 15.282 -9.240 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.275 4.275 3 C -0.080 4.080 4 N -0.164 5.164 5 C -0.033 4.033 6 N -0.101 5.101 7 C 0.063 3.937 8 N -0.306 5.306 9 C 0.407 3.593 10 O -0.428 6.428 11 N -0.353 5.353 12 C 0.009 3.991 13 C -0.108 4.108 14 C -0.164 4.164 15 C 0.109 3.891 16 C -0.491 4.491 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.429 5.429 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.176 4.176 25 C -0.125 4.125 26 C -0.250 4.250 27 C -0.085 4.085 28 C 0.039 3.961 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.191 0.809 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.253 0.747 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.198 15.101 -9.073 17.658 hybrid contribution -1.036 -0.311 0.706 1.292 sum 0.162 14.789 -8.367 16.993 Atomic orbital electron populations 1.20012 0.89073 1.02059 1.01727 1.19707 0.96924 0.90188 1.20662 1.22152 0.84118 0.99472 1.02240 1.48273 1.05383 1.04611 1.58083 1.21777 0.85886 0.92534 1.03114 1.78118 1.16726 0.87215 1.28072 1.18844 0.91323 0.84320 0.99199 1.42170 1.10044 1.01130 1.77298 1.15729 0.84885 0.80346 0.78347 1.90979 1.14292 1.81951 1.55540 1.47225 1.07762 1.04244 1.76109 1.21639 0.92687 0.86575 0.98200 1.20464 0.95256 1.00172 0.94894 1.19290 0.92655 1.00780 1.03692 1.17611 0.92916 0.88988 0.89627 1.19615 1.01073 1.31373 0.97071 0.90176 1.25865 0.95961 0.94897 0.97563 1.69799 1.26437 1.36213 1.10469 0.86254 0.80959 0.80066 0.79409 1.18429 1.20060 1.19863 1.21303 0.92262 1.02071 1.01950 1.20604 0.97477 0.97498 0.96878 1.20180 0.93760 1.06238 1.04791 1.19042 0.93738 0.98101 0.97600 1.20374 0.80235 0.97334 0.98198 0.91936 0.91812 0.92289 0.80912 0.90995 0.89682 0.89270 0.74681 0.89361 0.91454 0.92077 0.90383 0.91087 0.86303 0.89283 0.89409 0.91327 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.22 36.00 0.37 -0.26 16 2 C -0.26 -3.19 6.12 -104.88 -0.64 -3.84 16 3 C 0.07 0.69 11.39 -17.24 -0.20 0.50 16 4 N -0.38 -4.80 4.01 -68.18 -0.27 -5.07 16 5 C 0.11 0.84 11.47 59.85 0.69 1.53 16 6 N -0.27 -4.80 10.81 31.44 0.34 -4.46 16 7 C 0.32 5.19 7.78 -154.36 -1.20 3.99 16 8 N -0.65 -10.39 5.36 -15.51 -0.08 -10.47 16 9 C 0.71 13.37 8.29 -86.92 -0.72 12.65 16 10 O -0.55 -12.32 14.57 5.28 0.08 -12.25 16 11 N -0.62 -11.04 2.94 -180.11 -0.53 -11.57 16 12 C 0.13 2.36 6.45 -3.75 -0.02 2.33 16 13 C -0.07 -1.44 5.28 -28.05 -0.15 -1.59 16 14 C -0.16 -3.72 5.82 -103.91 -0.60 -4.33 16 15 C 0.11 2.82 5.55 -106.67 -0.59 2.23 16 16 C -0.46 -11.76 8.29 -37.74 -0.31 -12.08 16 17 H 0.08 1.96 6.31 -52.48 -0.33 1.63 16 18 C 0.07 1.82 5.26 -17.34 -0.09 1.73 16 19 N -0.80 -20.59 10.87 55.55 0.60 -19.99 16 20 Si 0.91 18.66 29.57 -169.99 -5.03 13.63 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.16 -3.93 8.63 -38.98 -0.34 -4.26 16 25 C -0.11 -2.37 10.03 -39.76 -0.40 -2.77 16 26 C -0.23 -4.72 9.63 -39.15 -0.38 -5.10 16 27 C -0.08 -1.73 5.82 -104.59 -0.61 -2.34 16 28 C 0.16 2.65 6.15 -5.03 -0.03 2.62 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 32 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.41 5.38 5.81 -40.82 -0.24 5.14 16 37 H 0.09 1.60 7.07 -51.93 -0.37 1.23 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.57 6.45 -51.93 -0.33 1.23 16 41 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 42 H 0.12 3.12 6.28 -52.49 -0.33 2.79 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 44 H 0.09 1.54 8.05 -52.49 -0.42 1.11 16 45 H 0.07 0.96 5.81 -51.93 -0.30 0.66 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -33.50 374.63 -10.56 -44.06 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.09 Total: 9.44 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -5.23 Total: -8.98 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.06 Total: -51.56 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.50 -10.56 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599804183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.436 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds