Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35986 * 116.99897 * 2 1 4 4 C 1.38570 * 120.07459 * 359.97438 * 3 2 1 5 5 C 1.38238 * 119.99772 * 180.23600 * 4 3 2 6 6 C 1.38254 * 120.15025 * 359.48447 * 5 4 3 7 7 C 1.50695 * 119.92992 * 180.25886 * 6 5 4 8 8 C 1.50700 * 109.47136 * 270.25481 * 7 6 5 9 9 O 1.21285 * 120.00166 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00447 * 179.97438 * 8 7 6 11 11 C 1.47069 * 136.05079 * 359.63519 * 10 8 7 12 12 C 1.53761 * 87.88611 * 152.95958 * 11 10 8 13 13 C 1.50696 * 114.26650 * 139.78916 * 12 11 10 14 14 H 1.08000 * 120.00178 * 266.47573 * 13 12 11 15 15 C 1.37879 * 119.99750 * 86.48013 * 13 12 11 16 16 N 1.31508 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47218 * 89.99476 * 17 15 13 19 19 H 1.48496 * 109.47259 * 209.99466 * 17 15 13 20 20 H 1.48498 * 109.46908 * 329.99950 * 17 15 13 21 21 C 1.47066 * 136.06299 * 179.97438 * 10 8 7 22 22 C 1.38247 * 120.14245 * 0.51541 * 6 5 4 23 23 C 1.38561 * 119.99676 * 359.74288 * 22 6 5 24 24 O 1.35995 * 120.06921 * 180.02562 * 23 22 6 25 25 C 1.42899 * 117.00373 * 359.97408 * 24 23 22 26 26 F 1.39900 * 109.47399 * 300.00425 * 25 24 23 27 27 F 1.39912 * 109.46776 * 60.00097 * 25 24 23 28 28 H 1.08995 * 109.47254 * 300.00109 * 1 2 3 29 29 H 1.08999 * 109.47402 * 60.00178 * 1 2 3 30 30 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99648 * 359.95072 * 4 3 2 32 32 H 1.08000 * 119.92674 * 179.74797 * 5 4 3 33 33 H 1.08999 * 109.47395 * 30.25098 * 7 6 5 34 34 H 1.08994 * 109.47397 * 150.25535 * 7 6 5 35 35 H 1.08992 * 113.46789 * 267.68984 * 11 10 8 36 36 H 1.09000 * 113.46785 * 38.13129 * 11 10 8 37 37 H 1.09001 * 114.39341 * 272.67601 * 12 11 10 38 38 H 0.97004 * 120.00337 * 180.02562 * 16 15 13 39 39 H 1.08996 * 113.46664 * 321.87548 * 21 10 8 40 40 H 1.08996 * 113.46359 * 92.24886 * 21 10 8 41 41 H 1.08001 * 119.99709 * 179.76743 * 22 6 5 42 42 H 1.09003 * 109.47911 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6056 -0.0055 6 6 3.3029 3.6798 0.0009 7 6 3.9836 5.0243 0.0014 8 6 4.2116 5.4724 -1.4193 9 8 3.8558 4.7695 -2.3414 10 7 4.8099 6.6548 -1.6652 11 6 5.3574 7.7533 -0.8549 12 6 6.3068 8.0660 -2.0233 13 6 6.5008 9.5370 -2.2870 14 1 5.8828 10.0412 -3.0152 15 6 7.4673 10.2391 -1.5986 16 7 8.2195 9.6253 -0.7116 17 14 7.7083 12.0624 -1.9260 18 1 6.8400 12.8483 -1.0129 19 1 9.1293 12.4239 -1.6909 20 1 7.3471 12.3643 -3.3343 21 6 5.1970 7.4172 -2.8618 22 6 4.0603 2.5233 0.0014 23 6 3.4359 1.2863 0.0010 24 8 4.1795 0.1477 0.0021 25 6 5.6002 0.3006 0.0031 26 9 5.9942 1.0058 -1.1392 27 9 5.9924 1.0068 1.1454 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2145 2.3196 -0.0018 32 1 1.3342 4.5114 -0.0100 33 1 3.3534 5.7505 0.5146 34 1 4.9413 4.9465 0.5159 35 1 4.6373 8.5470 -0.6565 36 1 5.8709 7.4147 0.0449 37 1 7.2408 7.5043 -2.0072 38 1 8.8993 10.1194 -0.2270 39 1 5.5739 6.7923 -3.6715 40 1 4.4341 8.1215 -3.1934 41 1 5.1386 2.5840 0.0026 42 1 6.0716 -0.6823 0.0043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600098732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -152.138199 kcal Electronic energy + Delta-G solvation = -29512.530933 eV Core-core repulsion = 24902.499101 eV Total energy + Delta-G solvation = -4610.031833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.44509 -47.43370 -40.68723 -39.46141 -38.49228 -37.68627 -36.58124 -32.71378 -32.12098 -30.61209 -29.49811 -28.06784 -26.75040 -26.08873 -24.97706 -24.74998 -22.62469 -21.88138 -20.37452 -19.07564 -18.54388 -18.07548 -18.00694 -17.60090 -16.89321 -16.57763 -16.21304 -15.96573 -15.59135 -15.19526 -14.86226 -14.57837 -14.50627 -14.28875 -14.13325 -13.99577 -13.95788 -13.73787 -13.44656 -12.92875 -12.81293 -12.55918 -12.23252 -12.07582 -12.03677 -11.74203 -11.57912 -11.51410 -11.24650 -11.12235 -11.09032 -10.96366 -10.80057 -10.36139 -9.62119 -9.22385 -9.03005 -8.82064 -8.59613 -8.01139 -7.85245 -6.19684 -4.25295 1.16740 1.26156 2.41349 3.04503 3.18283 3.22582 3.30437 3.32682 3.34114 3.41704 3.78894 4.13575 4.32300 4.50420 4.61275 4.66490 4.76452 4.91603 4.93177 5.07580 5.10727 5.18461 5.23011 5.28338 5.39545 5.54155 5.70363 5.93520 6.04381 6.10552 6.18100 6.26419 6.37375 6.44937 6.53555 6.55225 6.61886 6.67300 6.80478 7.26448 7.54623 7.78233 8.17001 8.53741 8.77184 8.79125 9.41621 10.90050 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.002499 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.518587 B =11201.849010 C =12138.821784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.109 3.891 4 C -0.175 4.175 5 C -0.087 4.087 6 C -0.054 4.054 7 C -0.096 4.096 8 C 0.533 3.467 9 O -0.556 6.556 10 N -0.645 5.645 11 C 0.096 3.904 12 C 0.035 3.965 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.100 3.900 22 C -0.136 4.136 23 C 0.075 3.925 24 O -0.312 6.312 25 C 0.409 3.591 26 F -0.195 7.195 27 F -0.200 7.200 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.264 0.736 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -18.033 6.019 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.064 3.936 4 C -0.194 4.194 5 C -0.105 4.105 6 C -0.055 4.055 7 C -0.135 4.135 8 C 0.322 3.678 9 O -0.436 6.436 10 N -0.379 5.379 11 C -0.026 4.026 12 C 0.016 3.984 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.022 4.022 22 C -0.154 4.154 23 C 0.032 3.968 24 O -0.230 6.230 25 C 0.318 3.682 26 F -0.177 7.177 27 F -0.182 7.182 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.157 0.843 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.353 -18.927 5.710 22.797 hybrid contribution 0.145 1.460 -0.002 1.467 sum -11.208 -17.466 5.708 21.524 Atomic orbital electron populations 1.23064 0.78518 1.03888 1.01364 1.86135 1.21096 1.25934 1.89150 1.18092 0.88592 0.85283 1.01636 1.20986 0.99862 0.91253 1.07279 1.20783 0.93706 0.97282 0.98777 1.19069 0.93203 0.93531 0.99657 1.20562 1.02660 0.94390 0.95918 1.19896 0.76944 0.80486 0.90486 1.90667 1.51959 1.54509 1.46436 1.50023 1.57462 1.16742 1.13658 1.23675 0.95718 0.85140 0.98066 1.20381 0.92218 0.96393 0.89420 1.20912 1.18719 0.92636 1.23267 0.91844 1.25031 0.95061 0.98691 0.94758 1.69947 1.21221 1.36366 1.24721 0.86536 0.77441 0.84868 0.78847 1.20509 1.21126 1.19692 1.23322 0.97541 0.91773 0.89549 1.21211 1.00817 0.90459 1.02948 1.17924 0.88048 0.85092 1.05749 1.86662 1.16737 1.30515 1.89085 1.23373 0.80395 0.92373 0.72029 1.93143 1.90590 1.82115 1.51827 1.93100 1.90715 1.82233 1.52120 0.92671 0.92592 0.88256 0.84498 0.85293 0.88015 0.88063 0.90755 0.92143 0.91345 0.92614 0.92543 0.90972 0.84300 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.81 10.28 -34.20 -0.35 -4.16 16 3 C 0.11 1.49 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.12 9.04 -39.46 -0.36 -2.47 16 5 C -0.09 -1.16 9.69 -39.58 -0.38 -1.54 16 6 C -0.05 -0.81 4.37 -104.62 -0.46 -1.27 16 7 C -0.10 -1.46 5.65 -29.04 -0.16 -1.62 16 8 C 0.53 10.47 8.07 -10.98 -0.09 10.38 16 9 O -0.56 -12.68 16.81 5.55 0.09 -12.59 16 10 N -0.64 -13.11 3.69 -185.06 -0.68 -13.79 16 11 C 0.10 1.99 8.00 -8.36 -0.07 1.92 16 12 C 0.04 0.82 3.79 -91.13 -0.35 0.47 16 13 C -0.52 -13.06 8.83 -34.44 -0.30 -13.37 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.93 13.26 55.43 0.74 -23.20 16 17 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C 0.10 2.11 8.17 -8.51 -0.07 2.04 16 22 C -0.14 -2.09 7.91 -39.46 -0.31 -2.40 16 23 C 0.08 1.11 6.50 -39.12 -0.25 0.86 16 24 O -0.31 -4.11 10.22 -34.23 -0.35 -4.46 16 25 C 0.41 4.23 5.98 101.05 0.60 4.83 16 26 F -0.19 -2.59 15.59 2.25 0.04 -2.56 16 27 F -0.20 -2.33 15.58 2.25 0.04 -2.29 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 34 H 0.10 1.45 8.08 -51.93 -0.42 1.03 16 35 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 41 H 0.14 2.15 5.10 -52.49 -0.27 1.88 16 42 H 0.18 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -32.51 368.21 -6.68 -39.19 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.15 Total: 1.50 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.57 Total: 1.91 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.05 Total: -36.99 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.61 Total: -21.21 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.85 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.51 -6.68 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600098732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.947 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds