Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86790 * 120.00332 * 2 1 4 4 H 1.48502 * 109.47203 * 239.99864 * 3 2 1 5 5 H 1.48503 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47342 * 120.00317 * 3 2 1 7 7 C 1.39910 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00156 * 175.55514 * 7 2 1 9 9 C 1.41163 * 119.99617 * 355.56165 * 7 2 1 10 10 C 1.40870 * 120.15976 * 214.77664 * 9 7 2 11 11 C 1.36374 * 119.82716 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16632 * 0.02562 * 11 10 9 13 13 N 1.39239 * 119.82829 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00445 * 35.28916 * 13 12 11 15 15 O 1.21286 * 119.99497 * 355.70697 * 14 13 12 16 16 C 1.50700 * 120.00376 * 175.70716 * 14 13 12 17 17 O 1.42902 * 109.47093 * 180.02562 * 16 14 13 18 18 C 1.35896 * 116.99757 * 180.02562 * 17 16 14 19 19 C 1.38738 * 120.05853 * 359.71817 * 18 17 16 20 20 C 1.38145 * 119.94237 * 179.76808 * 19 18 17 21 21 C 1.38260 * 120.05567 * 0.51328 * 20 19 18 22 22 N 1.48008 * 119.94289 * 179.72160 * 21 20 19 23 23 O 1.21795 * 120.00211 * 180.02562 * 22 21 20 24 24 O 1.21805 * 119.99891 * 0.02562 * 22 21 20 25 25 C 1.38264 * 120.11780 * 359.74112 * 21 20 19 26 26 C 1.38152 * 120.04936 * 0.02562 * 25 21 20 27 27 C 1.39474 * 120.33480 * 0.24881 * 12 11 10 28 28 C 1.36380 * 120.16915 * 359.48712 * 27 12 11 29 29 H 0.97001 * 119.99169 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.08424 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91522 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99782 * 215.28621 * 13 12 11 33 33 H 1.08997 * 109.47269 * 59.99774 * 16 14 13 34 34 H 1.09000 * 109.46659 * 299.99755 * 16 14 13 35 35 H 1.08003 * 120.02280 * 0.02562 * 19 18 17 36 36 H 1.07999 * 119.96983 * 180.23225 * 20 19 18 37 37 H 1.07991 * 119.97668 * 180.02562 * 25 21 20 38 38 H 1.07996 * 120.02487 * 179.97438 * 26 25 21 39 39 H 1.07996 * 119.91352 * 179.74339 * 27 12 11 40 40 H 1.07999 * 120.08748 * 180.25877 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0966 1.6962 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6962 1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0858 -1.2131 -0.0730 9 6 1.3055 -2.4323 0.0935 10 6 1.8648 -3.5188 0.7944 11 6 1.1802 -4.6951 0.8806 12 6 -0.0704 -4.8241 0.2765 13 7 -0.7631 -6.0285 0.3684 14 6 -0.6813 -6.7689 1.4916 15 8 0.0559 -6.4261 2.3916 16 6 -1.5060 -8.0227 1.6293 17 8 -1.2470 -8.6261 2.8986 18 6 -1.9152 -9.7747 3.1834 19 6 -2.8062 -10.3069 2.2628 20 6 -3.4806 -11.4771 2.5528 21 6 -3.2761 -12.1123 3.7638 22 7 -4.0045 -13.3626 4.0744 23 8 -3.8256 -13.9228 5.1410 24 8 -4.7830 -13.8315 3.2634 25 6 -2.3926 -11.5812 4.6852 26 6 -1.7121 -10.4137 4.3980 27 6 -0.6281 -3.7547 -0.4240 28 6 0.0422 -2.5704 -0.5142 29 1 -0.4849 0.8401 0.0004 30 1 2.8332 -3.4204 1.2623 31 1 1.6078 -5.5291 1.4172 32 1 -1.3045 -6.3346 -0.3759 33 1 -1.2422 -8.7202 0.8344 34 1 -2.5641 -7.7715 1.5560 35 1 -2.9694 -9.8088 1.3184 36 1 -4.1715 -11.8938 1.8349 37 1 -2.2343 -12.0794 5.6302 38 1 -1.0224 -9.9990 5.1182 39 1 -1.5950 -3.8634 -0.8926 40 1 -0.3927 -1.7418 -1.0534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -37.574437 kcal Electronic energy + Delta-G solvation = -26969.449055 eV Core-core repulsion = 22717.355605 eV Total energy + Delta-G solvation = -4252.093451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.109 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.21710 -41.80744 -40.96860 -39.24696 -38.50663 -37.64759 -36.20389 -34.78209 -32.74645 -32.30078 -31.54277 -31.16730 -29.55343 -27.21226 -26.53226 -24.42593 -23.57955 -23.18982 -22.58415 -21.34769 -20.40384 -19.75349 -19.58641 -19.28326 -18.66586 -18.57174 -17.71573 -17.57329 -17.01250 -16.95149 -16.00683 -15.94768 -15.64145 -15.42449 -14.95504 -14.87551 -14.65557 -14.47987 -14.07868 -13.94367 -13.89237 -13.61456 -13.24868 -12.91335 -12.79452 -12.72299 -12.50940 -12.42501 -12.33888 -12.29291 -12.28533 -11.80621 -11.41232 -11.24383 -10.86581 -10.64337 -10.53265 -9.90650 -9.48265 -8.76780 -8.52530 -6.35246 -1.20799 -0.11937 0.28802 0.41658 0.74687 1.12254 1.34141 1.39324 1.42936 1.50428 1.70218 2.20491 2.23003 2.54664 2.78990 3.27163 3.45071 3.50629 3.61599 3.68750 3.86134 3.97586 4.05315 4.20391 4.38812 4.41846 4.50441 4.63220 4.69521 4.86154 4.92100 5.04916 5.11048 5.12512 5.30173 5.31905 5.40466 5.67854 5.85901 5.90710 6.01246 6.12258 6.37747 6.50191 6.62280 6.67343 6.95173 6.97636 7.29571 8.39869 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.041896 B = 0.001578 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.153839 B =17739.180697 C =18019.761260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.223 4.223 11 C -0.097 4.097 12 C 0.019 3.981 13 N -0.633 5.633 14 C 0.495 3.505 15 O -0.564 6.564 16 C 0.043 3.957 17 O -0.301 6.301 18 C 0.184 3.816 19 C -0.199 4.199 20 C -0.006 4.006 21 C -0.106 4.106 22 N 0.038 4.962 23 O -0.195 6.195 24 O -0.182 6.182 25 C -0.012 4.012 26 C -0.154 4.154 27 C -0.114 4.114 28 C -0.160 4.160 29 H 0.285 0.715 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.425 0.575 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.191 0.809 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.131 0.869 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -18.445 0.394 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.065 3.935 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.074 4.074 13 N -0.280 5.280 14 C 0.283 3.717 15 O -0.442 6.442 16 C -0.034 4.034 17 O -0.212 6.212 18 C 0.136 3.864 19 C -0.218 4.218 20 C -0.025 4.025 21 C -0.190 4.190 22 N 0.550 4.450 23 O -0.405 6.405 24 O -0.395 6.395 25 C -0.031 4.031 26 C -0.174 4.174 27 C -0.134 4.134 28 C -0.180 4.180 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.263 0.737 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.149 0.851 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.204 -17.387 1.020 19.252 hybrid contribution 0.061 0.402 -0.019 0.407 sum -8.143 -16.985 1.001 18.863 Atomic orbital electron populations 1.69807 1.08478 1.30058 1.38350 1.26702 0.95826 1.04195 0.91578 0.85181 0.78551 0.75719 0.79799 1.18221 1.19198 1.19164 1.19720 0.94865 0.91437 1.46948 0.91012 1.18058 0.93500 0.92612 0.89335 1.20926 1.01652 0.95643 1.06081 1.20529 0.93923 0.97342 0.99943 1.17223 0.93355 0.87321 1.09515 1.42615 1.48702 1.19619 1.17093 1.20858 0.83263 0.85780 0.81820 1.90758 1.40397 1.71573 1.41441 1.22842 1.02016 0.92906 0.85619 1.86217 1.62389 1.35551 1.37058 1.19622 0.88659 0.84326 0.93796 1.21643 0.99565 0.97874 1.02695 1.21090 0.95788 0.92418 0.93238 1.21218 1.06161 0.90289 1.01336 1.43847 0.99216 1.02278 0.99626 1.94529 1.70635 1.62563 1.12737 1.94511 1.32178 1.68542 1.44292 1.20948 0.89902 0.93249 0.98963 1.20623 1.04091 0.95618 0.97020 1.20579 0.99421 0.91846 1.01515 1.21191 0.97401 0.96670 1.02761 0.90416 0.88864 0.87457 0.73675 0.83892 0.84202 0.79230 0.80835 0.81361 0.81912 0.85103 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.05 10.60 21.82 0.23 -42.82 16 2 C 0.03 1.46 5.42 85.24 0.46 1.92 16 3 Si 0.99 38.25 29.56 68.60 2.03 40.28 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.50 -26.84 9.03 23.39 0.21 -26.63 16 8 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 9 C 0.07 3.60 5.55 -21.27 -0.12 3.48 16 10 C -0.22 -11.25 9.74 22.48 0.22 -11.03 16 11 C -0.10 -4.43 8.61 22.14 0.19 -4.24 16 12 C 0.02 0.75 6.31 38.56 0.24 1.00 16 13 N -0.63 -16.53 5.30 -303.11 -1.61 -18.14 16 14 C 0.50 13.14 7.74 87.66 0.68 13.82 16 15 O -0.56 -22.02 13.92 15.99 0.22 -21.80 16 16 C 0.04 0.54 5.22 71.24 0.37 0.92 16 17 O -0.30 -5.50 9.67 -73.34 -0.71 -6.21 16 18 C 0.18 2.42 6.69 22.51 0.15 2.57 16 19 C -0.20 -1.54 9.04 22.37 0.20 -1.34 16 20 C -0.01 -0.07 9.55 22.25 0.21 0.15 16 21 C -0.11 -1.64 6.85 36.39 0.25 -1.39 16 22 N 0.04 0.81 4.45 -46.44 -0.21 0.60 16 23 O -0.19 -4.59 18.44 18.89 0.35 -4.24 16 24 O -0.18 -4.08 18.44 18.88 0.35 -3.73 16 25 C -0.01 -0.15 9.55 22.26 0.21 0.06 16 26 C -0.15 -2.04 9.99 22.37 0.22 -1.81 16 27 C -0.11 -4.63 9.90 22.13 0.22 -4.41 16 28 C -0.16 -7.93 8.62 22.48 0.19 -7.74 16 29 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 30 H 0.09 4.58 8.06 -2.91 -0.02 4.55 16 31 H 0.11 4.85 6.22 -2.91 -0.02 4.83 16 32 H 0.42 6.55 8.82 -92.71 -0.82 5.73 16 33 H 0.14 0.58 7.67 -2.39 -0.02 0.56 16 34 H 0.14 0.70 7.65 -2.39 -0.02 0.68 16 35 H 0.19 0.00 6.30 -2.91 -0.02 -0.01 16 36 H 0.17 1.18 7.60 -2.91 -0.02 1.16 16 37 H 0.17 1.84 7.60 -2.91 -0.02 1.82 16 38 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.12 6.17 6.13 -2.91 -0.02 6.15 16 Total: -1.00 -75.35 357.82 4.88 -70.46 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.31 Total: 20.28 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 3.92 Total: -34.68 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -1.58 Total: -60.36 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: 0.21 Total: -35.99 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -75.35 4.88 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.889 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds