Wall clock time and date at job start Tue Mar 31 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46924 * 2 1 4 4 C 1.35916 * 116.99816 * 180.02562 * 3 2 1 5 5 C 1.38821 * 119.92133 * 180.02562 * 4 3 2 6 6 C 1.37920 * 120.07074 * 179.97438 * 5 4 3 7 7 C 1.39445 * 119.92637 * 359.97438 * 6 5 4 8 8 C 1.48227 * 120.07265 * 179.97438 * 7 6 5 9 9 C 1.33384 * 122.81249 * 309.70651 * 8 7 6 10 10 S 1.75298 * 111.17438 * 179.97438 * 9 8 7 11 11 C 1.75864 * 92.34216 * 0.29732 * 10 9 8 12 12 N 1.35050 * 130.57838 * 179.84621 * 11 10 9 13 13 C 1.29990 * 121.74069 * 179.97438 * 12 11 10 14 14 N 1.36102 * 121.78203 * 359.97438 * 13 12 11 15 15 C 1.37176 * 119.85931 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00036 * 150.95020 * 15 14 13 17 17 C 1.39006 * 120.00187 * 330.95107 * 15 14 13 18 18 N 1.31301 * 119.99801 * 342.64476 * 17 15 14 19 19 Si 1.86799 * 120.00252 * 162.64404 * 17 15 14 20 20 H 1.48500 * 109.46876 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47120 * 120.00096 * 19 17 15 22 22 H 1.48497 * 109.47346 * 239.99977 * 19 17 15 23 23 C 1.34745 * 120.28415 * 0.02562 * 14 13 12 24 24 O 1.21870 * 120.62232 * 180.02562 * 23 14 13 25 25 C 1.39058 * 109.89180 * 359.83819 * 11 10 9 26 26 C 1.39445 * 119.84835 * 359.97438 * 7 6 5 27 27 C 1.37911 * 119.92956 * 0.06476 * 26 7 6 28 28 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46880 * 299.99921 * 1 2 3 30 30 H 1.08999 * 109.47212 * 60.00410 * 1 2 3 31 31 H 1.08998 * 109.47329 * 240.00180 * 2 1 3 32 32 H 1.09006 * 109.47156 * 119.99980 * 2 1 3 33 33 H 1.07995 * 119.96766 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.03544 * 179.70258 * 6 5 4 35 35 H 1.08006 * 124.40992 * 0.04215 * 9 8 7 36 36 H 1.08001 * 119.10524 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99330 * 179.97438 * 18 17 15 38 38 H 1.08009 * 120.03624 * 180.02562 * 26 7 6 39 39 H 1.07999 * 119.96390 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5254 -0.0005 5 6 3.8826 2.8089 0.0000 6 6 5.2494 2.9932 0.0000 7 6 6.1003 1.8885 0.0000 8 6 7.5698 2.0827 -0.0006 9 6 8.1922 2.8872 -0.8635 10 16 9.9239 2.8890 -0.5916 11 6 9.7890 1.7462 0.7383 12 7 10.7393 1.2016 1.5284 13 6 10.4426 0.3622 2.4756 14 7 9.1583 -0.0137 2.7239 15 6 8.8898 -0.9020 3.7341 16 1 7.9417 -0.8630 4.2498 17 6 9.8381 -1.8525 4.0942 18 7 10.8272 -2.1349 3.2781 19 14 9.7054 -2.7280 5.7389 20 1 8.5095 -2.2338 6.4676 21 1 9.5775 -4.1901 5.5126 22 1 10.9234 -2.4565 6.5439 23 6 8.1493 0.4829 1.9816 24 8 6.9970 0.1509 2.1989 25 6 8.4554 1.4055 0.9360 26 6 5.5656 0.6006 0.0005 27 6 4.1980 0.4234 -0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.2231 3.6641 0.0004 34 1 5.6602 3.9920 -0.0045 35 1 7.6939 3.4634 -1.6292 36 1 11.2366 -0.0472 3.0824 37 1 11.4891 -2.7979 3.5295 38 1 6.2219 -0.2573 0.0010 39 1 3.7833 -0.5738 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000131734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:01 Heat of formation + Delta-G solvation = -9.123353 kcal Electronic energy + Delta-G solvation = -26445.656173 eV Core-core repulsion = 22637.549325 eV Total energy + Delta-G solvation = -3808.106848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.082 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.39022 -41.07800 -39.07392 -38.20393 -37.39378 -35.58880 -33.71474 -32.84357 -31.93460 -30.88799 -29.43266 -28.11532 -25.79871 -24.91313 -24.53242 -23.71929 -22.71263 -21.33189 -20.26368 -19.38126 -19.20554 -18.54866 -17.49906 -17.20181 -17.05534 -16.88527 -16.49469 -16.40909 -15.95892 -15.54391 -15.08575 -14.66615 -14.49062 -14.41467 -14.25509 -14.08004 -14.04473 -13.84128 -13.51196 -13.40924 -13.10959 -13.06116 -12.95756 -12.64422 -12.56661 -12.14635 -11.93824 -11.78380 -11.67334 -11.47878 -10.93968 -10.77082 -10.65209 -9.93934 -9.51720 -9.21763 -8.88078 -8.62021 -6.62231 -0.43813 0.17991 0.35274 0.42545 0.88870 1.02750 1.30757 1.37957 1.43496 1.54499 2.02407 2.22851 2.38954 2.48840 2.80334 3.06536 3.56728 3.76523 3.82627 3.89679 3.92042 4.01331 4.15739 4.31717 4.33696 4.34937 4.40357 4.47602 4.63851 4.79411 4.88824 4.92121 4.98081 5.05996 5.07028 5.13768 5.18063 5.32845 5.44479 5.53583 5.73394 5.76877 5.97468 6.25354 6.41801 6.63066 7.10499 7.34938 8.16700 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.004001 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.155979 B = 6996.276619 C = 9599.269982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 O -0.324 6.324 4 C 0.124 3.876 5 C -0.159 4.159 6 C -0.062 4.062 7 C -0.079 4.079 8 C -0.010 4.010 9 C -0.218 4.218 10 S 0.200 5.800 11 C 0.061 3.939 12 N -0.545 5.545 13 C 0.359 3.641 14 N -0.350 5.350 15 C -0.371 4.371 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.862 5.862 19 Si 1.015 2.985 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.248 1.248 23 C 0.487 3.513 24 O -0.581 6.581 25 C -0.282 4.282 26 C -0.039 4.039 27 C -0.217 4.217 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.208 0.792 36 H 0.210 0.790 37 H 0.301 0.699 38 H 0.089 0.911 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 5.950 -6.309 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.238 6.238 4 C 0.079 3.921 5 C -0.177 4.177 6 C -0.080 4.080 7 C -0.082 4.082 8 C -0.022 4.022 9 C -0.352 4.352 10 S 0.460 5.540 11 C -0.179 4.179 12 N -0.272 5.272 13 C 0.075 3.925 14 N -0.048 5.048 15 C -0.500 4.500 16 H 0.120 0.880 17 C -0.187 4.187 18 N -0.494 5.494 19 Si 0.834 3.166 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.172 1.172 23 C 0.288 3.712 24 O -0.465 6.465 25 C -0.298 4.298 26 C -0.057 4.057 27 C -0.236 4.236 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.225 0.775 36 H 0.226 0.774 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.584 6.748 -7.111 12.394 hybrid contribution -1.481 -2.282 1.583 3.148 sum -9.065 4.465 -5.528 11.518 Atomic orbital electron populations 1.21783 0.90612 1.04204 1.03512 1.23052 0.97418 0.81059 1.01721 1.86022 1.18334 1.30864 1.88610 1.19149 0.82457 0.94263 0.96253 1.20546 0.95018 0.95059 1.07067 1.21215 0.91830 0.98474 0.96505 1.18398 0.90672 0.93723 1.05383 1.18008 0.92469 0.97005 0.94706 1.25462 0.96788 1.07105 1.05809 1.83240 1.03654 1.40992 1.26159 1.24234 0.91442 1.01015 1.01186 1.67990 1.32827 1.16663 1.09764 1.25072 0.86941 0.88010 0.92428 1.42862 1.07148 1.30683 1.24152 1.20305 1.06031 1.13036 1.10595 0.88013 1.26603 0.93957 0.95242 1.02878 1.69796 1.13649 1.30809 1.35112 0.84588 0.79884 0.77361 0.74794 1.18948 1.19179 1.17213 1.17345 0.85890 0.84651 0.83350 1.90692 1.19705 1.64440 1.71643 1.20741 0.94460 1.08997 1.05652 1.20781 0.94403 0.96306 0.94252 1.21173 0.93498 0.98914 1.09977 0.88352 0.91723 0.91099 0.91349 0.92556 0.82607 0.82570 0.77498 0.77395 0.88754 0.89282 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.91 5.46 71.98 0.39 1.31 16 3 O -0.32 -8.97 10.13 -92.60 -0.94 -9.91 16 4 C 0.12 3.91 6.69 22.55 0.15 4.06 16 5 C -0.16 -4.54 9.97 22.33 0.22 -4.32 16 6 C -0.06 -1.89 9.59 22.49 0.22 -1.67 16 7 C -0.08 -3.01 5.24 -20.04 -0.10 -3.11 16 8 C -0.01 -0.39 5.50 -19.82 -0.11 -0.50 16 9 C -0.22 -6.63 10.65 66.72 0.71 -5.91 16 10 S 0.20 6.33 23.22 -56.49 -1.31 5.02 16 11 C 0.06 2.69 7.68 84.39 0.65 3.34 16 12 N -0.55 -25.48 10.42 -193.63 -2.02 -27.50 16 13 C 0.36 17.65 10.29 180.07 1.85 19.51 16 14 N -0.35 -18.76 2.74 -478.74 -1.31 -20.07 16 15 C -0.37 -19.69 9.10 84.04 0.76 -18.93 16 16 H 0.10 5.63 7.58 -2.91 -0.02 5.61 16 17 C 0.02 1.05 4.99 84.96 0.42 1.48 16 18 N -0.86 -41.00 11.19 21.67 0.24 -40.76 16 19 Si 1.01 36.24 29.59 68.60 2.03 38.27 16 20 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 21 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 23 C 0.49 26.67 7.42 85.38 0.63 27.30 16 24 O -0.58 -33.84 13.55 -4.90 -0.07 -33.91 16 25 C -0.28 -13.45 5.99 -20.05 -0.12 -13.57 16 26 C -0.04 -1.58 7.61 22.48 0.17 -1.40 16 27 C -0.22 -7.60 9.02 22.33 0.20 -7.40 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 32 H 0.06 1.28 7.66 -2.38 -0.02 1.26 16 33 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.21 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.21 9.80 6.18 -2.91 -0.02 9.78 16 37 H 0.30 12.76 8.31 -92.71 -0.77 11.99 16 38 H 0.09 4.17 7.38 -2.91 -0.02 4.14 16 39 H 0.13 4.17 6.28 -2.91 -0.02 4.15 16 Total: -1.00 -66.70 347.26 4.53 -62.17 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 1.11 Total: 27.95 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.79 Total: -1.27 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -3.09 Total: -88.33 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.00 Total: -43.82 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.31 Total: 5.02 kcal Total: -66.70 4.53 -62.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000131734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.046 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds