Wall clock time and date at job start Tue Mar 31 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48500 * 109.47246 * 239.99683 * 3 2 1 5 5 H 1.48501 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46911 * 119.99676 * 3 2 1 7 7 C 1.39888 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 198.09243 * 7 2 1 9 9 C 1.41189 * 120.00024 * 18.08712 * 7 2 1 10 10 C 1.40844 * 120.17664 * 203.21880 * 9 7 2 11 11 C 1.36422 * 119.81426 * 180.02562 * 10 9 7 12 12 C 1.39346 * 120.18213 * 0.02562 * 11 10 9 13 13 O 1.35648 * 119.82054 * 179.97438 * 12 11 10 14 14 C 1.35672 * 118.00051 * 77.93770 * 13 12 11 15 15 N 1.32279 * 119.69369 * 355.55413 * 14 13 12 16 16 C 1.31932 * 121.66230 * 180.02562 * 15 14 13 17 17 C 1.38111 * 120.85988 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.34926 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47120 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.47187 * 119.99849 * 18 17 16 21 21 F 1.39895 * 109.47245 * 239.99764 * 18 17 16 22 22 C 1.38784 * 119.29784 * 0.27410 * 17 16 15 23 23 C 1.38510 * 118.47953 * 359.43946 * 22 17 16 24 24 Cl 1.73601 * 120.45797 * 180.28097 * 23 22 17 25 25 C 1.39338 * 120.35855 * 0.23768 * 12 11 10 26 26 C 1.36419 * 120.18559 * 359.48105 * 25 12 11 27 27 H 0.96996 * 120.00512 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.09287 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.91078 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.56992 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.75947 * 179.72180 * 22 17 16 32 32 H 1.08007 * 119.90997 * 179.72062 * 25 12 11 33 33 H 1.07996 * 120.09479 * 180.27941 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6965 1.2126 7 6 2.0083 -1.2114 -0.0005 8 1 3.0483 -1.2346 0.2899 9 6 1.3548 -2.4038 -0.3807 10 6 1.8431 -3.6498 0.0584 11 6 1.2061 -4.7973 -0.3138 12 6 0.0757 -4.7391 -1.1265 13 8 -0.5516 -5.8847 -1.4926 14 6 -1.3588 -6.4873 -0.5837 15 7 -1.4418 -6.0006 0.6434 16 6 -2.2138 -6.5559 1.5580 17 6 -2.9683 -7.6746 1.2638 18 6 -3.8466 -8.2992 2.3170 19 9 -3.7340 -7.5741 3.5081 20 9 -5.1771 -8.2817 1.8851 21 9 -3.4446 -9.6212 2.5355 22 6 -2.9050 -8.2206 -0.0106 23 6 -2.0902 -7.6113 -0.9504 24 17 -1.9780 -8.2468 -2.5621 25 6 -0.4105 -3.5108 -1.5696 26 6 0.2114 -2.3538 -1.2017 27 1 -0.4851 0.8400 0.0004 28 1 2.7194 -3.6966 0.6880 29 1 1.5790 -5.7535 0.0223 30 1 -2.2556 -6.1305 2.5497 31 1 -3.4816 -9.0977 -0.2650 32 1 -1.2847 -3.4744 -2.2030 33 1 -0.1693 -1.4023 -1.5424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000170188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:41 Heat of formation + Delta-G solvation = -130.109877 kcal Electronic energy + Delta-G solvation = -26224.991209 eV Core-core repulsion = 21634.185788 eV Total energy + Delta-G solvation = -4590.805421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.033 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.30672 -47.82765 -47.76342 -40.83527 -38.73459 -36.82493 -36.62358 -33.70634 -32.90758 -31.35702 -29.80124 -29.30919 -26.39650 -25.29852 -23.94297 -22.70365 -21.32145 -20.94555 -18.80076 -18.64388 -18.63817 -18.23149 -17.54716 -17.15428 -15.75490 -15.47403 -15.27993 -14.92481 -14.66873 -14.58302 -14.21533 -14.20791 -14.09073 -13.97000 -13.92657 -13.79203 -13.25852 -12.88943 -12.35360 -12.29187 -12.16332 -12.07483 -11.94303 -11.31693 -11.24126 -11.16140 -11.05903 -10.59656 -10.13645 -9.98738 -9.69896 -9.56580 -9.31054 -8.54835 -7.76657 -7.50145 -6.99756 -4.57531 0.67018 0.83196 1.92860 2.28609 2.51847 2.91916 2.93632 2.96102 2.99653 3.35759 3.48490 3.63335 3.76294 3.86790 4.26758 4.30122 4.40538 4.48277 4.88017 5.02213 5.26686 5.49193 5.59545 5.93827 6.05354 6.12448 6.69120 6.82181 6.91138 7.06610 7.25469 7.37448 7.63226 7.76404 7.81263 7.99128 8.16307 8.41739 8.63779 8.76590 9.91946 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002929 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.335300 B = 9556.387543 C =10740.930293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.083 0.917 9 C 0.119 3.881 10 C -0.221 4.221 11 C -0.061 4.061 12 C -0.086 4.086 13 O -0.209 6.209 14 C 0.363 3.637 15 N -0.495 5.495 16 C 0.202 3.798 17 C -0.292 4.292 18 C 0.526 3.474 19 F -0.174 7.174 20 F -0.177 7.177 21 F -0.177 7.177 22 C 0.013 3.987 23 C -0.126 4.126 24 Cl -0.037 7.037 25 C -0.079 4.079 26 C -0.163 4.163 27 H 0.286 0.714 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 -12.022 1.637 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.129 4.129 13 O -0.111 6.111 14 C 0.184 3.816 15 N -0.217 5.217 16 C 0.043 3.957 17 C -0.297 4.297 18 C 0.471 3.529 19 F -0.156 7.156 20 F -0.158 7.158 21 F -0.159 7.159 22 C -0.012 4.012 23 C -0.156 4.156 24 Cl -0.008 7.008 25 C -0.098 4.098 26 C -0.183 4.183 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.192 0.808 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.488 -11.233 1.417 13.049 hybrid contribution -0.388 -0.106 0.125 0.421 sum -6.876 -11.339 1.542 13.350 Atomic orbital electron populations 1.69834 1.07756 1.30000 1.32377 1.26037 0.94812 1.01809 0.92041 0.86264 0.80167 0.79578 0.80260 1.18537 1.20090 1.18736 1.19698 0.98394 0.91227 1.37873 0.89854 1.17719 0.90748 0.92125 0.87795 1.20593 1.04194 0.92078 1.07189 1.20316 0.94819 0.97249 0.95628 1.18072 0.97807 0.82390 1.14587 1.84960 1.53505 1.37689 1.34921 1.20894 0.85807 0.87285 0.87569 1.68035 1.21626 1.31397 1.00672 1.22611 0.86285 0.88203 0.98640 1.20702 1.08929 1.04349 0.95729 1.17854 0.78508 0.76079 0.80507 1.93178 1.95893 1.77556 1.48925 1.93221 1.36740 1.96289 1.89582 1.93216 1.90461 1.36979 1.95213 1.20914 0.93290 0.97350 0.89696 1.20720 1.05472 0.99308 0.90113 1.98374 1.97465 1.85563 1.19446 1.20404 0.98563 0.91382 0.99468 1.20952 0.99717 0.96409 1.01180 0.90281 0.88280 0.89120 0.80752 0.82713 0.88810 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.74 10.88 55.54 0.60 -18.13 16 2 C 0.07 1.71 5.14 -17.34 -0.09 1.62 16 3 Si 0.91 17.33 29.60 -169.99 -5.03 12.29 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.44 -10.98 9.04 -37.84 -0.34 -11.32 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.12 3.00 5.59 -106.80 -0.60 2.40 16 10 C -0.22 -5.18 9.74 -39.25 -0.38 -5.56 16 11 C -0.06 -1.36 9.56 -39.82 -0.38 -1.74 16 12 C -0.09 -1.92 5.15 -38.76 -0.20 -2.12 16 13 O -0.21 -4.22 9.42 -2.13 -0.02 -4.24 16 14 C 0.36 6.49 7.41 -17.07 -0.13 6.36 16 15 N -0.50 -8.91 9.10 -13.29 -0.12 -9.03 16 16 C 0.20 2.87 10.59 -17.56 -0.19 2.68 16 17 C -0.29 -3.62 5.38 -104.47 -0.56 -4.18 16 18 C 0.53 5.84 3.33 36.00 0.12 5.95 16 19 F -0.17 -1.95 15.99 2.25 0.04 -1.91 16 20 F -0.18 -1.99 17.25 2.25 0.04 -1.95 16 21 F -0.18 -1.96 17.24 2.25 0.04 -1.92 16 22 C 0.01 0.16 9.57 -39.28 -0.38 -0.22 16 23 C -0.13 -1.85 6.36 -39.19 -0.25 -2.10 16 24 Cl -0.04 -0.50 28.54 -51.86 -1.48 -1.98 16 25 C -0.08 -1.83 9.92 -39.83 -0.40 -2.23 16 26 C -0.16 -4.04 8.66 -39.25 -0.34 -4.38 16 27 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 28 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.18 2.08 7.15 -52.49 -0.38 1.71 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.13 3.18 6.06 -52.49 -0.32 2.86 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -25.70 326.42 -7.05 -32.76 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -1.93 Total: 4.03 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -4.11 Total: -14.84 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.48 Total: -27.16 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.02 Total: -4.24 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.11 Total: -5.78 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.70 -7.05 -32.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.353 kcal (2) G-P(sol) polarization free energy of solvation -25.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds