Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48500 * 109.47246 * 239.99683 * 3 2 1 5 5 H 1.48501 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46911 * 119.99676 * 3 2 1 7 7 C 1.39888 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 198.09243 * 7 2 1 9 9 C 1.41189 * 120.00024 * 18.08712 * 7 2 1 10 10 C 1.40844 * 120.17664 * 203.21880 * 9 7 2 11 11 C 1.36422 * 119.81426 * 180.02562 * 10 9 7 12 12 C 1.39346 * 120.18213 * 0.02562 * 11 10 9 13 13 O 1.35648 * 119.82054 * 179.97438 * 12 11 10 14 14 C 1.35672 * 118.00051 * 77.93770 * 13 12 11 15 15 N 1.32279 * 119.69369 * 355.55413 * 14 13 12 16 16 C 1.31932 * 121.66230 * 180.02562 * 15 14 13 17 17 C 1.38111 * 120.85988 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.34926 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.47120 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.47187 * 119.99849 * 18 17 16 21 21 F 1.39895 * 109.47245 * 239.99764 * 18 17 16 22 22 C 1.38784 * 119.29784 * 0.27410 * 17 16 15 23 23 C 1.38510 * 118.47953 * 359.43946 * 22 17 16 24 24 Cl 1.73601 * 120.45797 * 180.28097 * 23 22 17 25 25 C 1.39338 * 120.35855 * 0.23768 * 12 11 10 26 26 C 1.36419 * 120.18559 * 359.48105 * 25 12 11 27 27 H 0.96996 * 120.00512 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.09287 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.91078 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.56992 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.75947 * 179.72180 * 22 17 16 32 32 H 1.08007 * 119.90997 * 179.72062 * 25 12 11 33 33 H 1.07996 * 120.09479 * 180.27941 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6965 1.2126 7 6 2.0083 -1.2114 -0.0005 8 1 3.0483 -1.2346 0.2899 9 6 1.3548 -2.4038 -0.3807 10 6 1.8431 -3.6498 0.0584 11 6 1.2061 -4.7973 -0.3138 12 6 0.0757 -4.7391 -1.1265 13 8 -0.5516 -5.8847 -1.4926 14 6 -1.3588 -6.4873 -0.5837 15 7 -1.4418 -6.0006 0.6434 16 6 -2.2138 -6.5559 1.5580 17 6 -2.9683 -7.6746 1.2638 18 6 -3.8466 -8.2992 2.3170 19 9 -3.7340 -7.5741 3.5081 20 9 -5.1771 -8.2817 1.8851 21 9 -3.4446 -9.6212 2.5355 22 6 -2.9050 -8.2206 -0.0106 23 6 -2.0902 -7.6113 -0.9504 24 17 -1.9780 -8.2468 -2.5621 25 6 -0.4105 -3.5108 -1.5696 26 6 0.2114 -2.3538 -1.2017 27 1 -0.4851 0.8400 0.0004 28 1 2.7194 -3.6966 0.6880 29 1 1.5790 -5.7535 0.0223 30 1 -2.2556 -6.1305 2.5497 31 1 -3.4816 -9.0977 -0.2650 32 1 -1.2847 -3.4744 -2.2030 33 1 -0.1693 -1.4023 -1.5424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000170188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -142.125159 kcal Electronic energy + Delta-G solvation = -26225.512231 eV Core-core repulsion = 21634.185788 eV Total energy + Delta-G solvation = -4591.326443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.033 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.21797 -48.73487 -48.66636 -42.14887 -40.24539 -38.49164 -37.75465 -35.44992 -34.08922 -32.59975 -31.59368 -31.04750 -27.69634 -26.75511 -25.24217 -23.88568 -23.09442 -22.58985 -20.01493 -19.64963 -19.54277 -19.49586 -19.34775 -18.37309 -17.38308 -16.83353 -16.57482 -16.32698 -15.79161 -15.63677 -15.57426 -15.33899 -15.22828 -15.10371 -14.89189 -14.81955 -14.62568 -14.28910 -14.09629 -13.80901 -13.60922 -13.33967 -13.22210 -13.00970 -12.79045 -12.66896 -12.32667 -12.23775 -11.79520 -11.41806 -11.10094 -11.03852 -10.92246 -9.83308 -9.59739 -9.30528 -8.73447 -6.42141 -0.51780 -0.26997 0.59814 0.80488 1.07831 1.39312 1.45351 1.52386 1.54401 2.04318 2.17773 2.19887 2.58563 2.71931 2.90486 3.11199 3.34106 3.45447 3.55531 3.72594 3.96022 4.14370 4.28411 4.33319 4.50943 4.77187 4.93740 5.04024 5.14338 5.25805 5.52385 5.56006 5.92563 5.97615 6.15624 6.36538 6.48742 6.64720 6.81563 6.97223 8.21314 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002929 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.335300 B = 9556.387543 C =10740.930293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.091 3.909 10 C -0.231 4.231 11 C -0.064 4.064 12 C -0.071 4.071 13 O -0.224 6.224 14 C 0.338 3.662 15 N -0.531 5.531 16 C 0.194 3.806 17 C -0.275 4.275 18 C 0.536 3.464 19 F -0.173 7.173 20 F -0.174 7.174 21 F -0.172 7.172 22 C 0.027 3.973 23 C -0.125 4.125 24 Cl -0.027 7.027 25 C -0.089 4.089 26 C -0.180 4.180 27 H 0.293 0.707 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.193 0.807 31 H 0.192 0.808 32 H 0.104 0.896 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -13.334 2.201 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.507 4.507 8 H 0.104 0.896 9 C 0.089 3.911 10 C -0.250 4.250 11 C -0.083 4.083 12 C -0.114 4.114 13 O -0.128 6.128 14 C 0.160 3.840 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.279 4.279 18 C 0.481 3.519 19 F -0.154 7.154 20 F -0.155 7.155 21 F -0.154 7.154 22 C 0.002 3.998 23 C -0.155 4.155 24 Cl 0.002 6.998 25 C -0.108 4.108 26 C -0.200 4.200 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.210 0.790 31 H 0.209 0.791 32 H 0.122 0.878 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.395 -12.575 1.997 14.725 hybrid contribution -0.282 0.033 -0.019 0.285 sum -7.677 -12.542 1.978 14.838 Atomic orbital electron populations 1.69879 1.09171 1.31264 1.33011 1.26864 0.95480 1.04823 0.90951 0.85182 0.78793 0.75147 0.80275 1.18312 1.19128 1.18130 1.19957 0.98810 0.92224 1.39670 0.89606 1.18029 0.91400 0.93163 0.88555 1.20771 1.04681 0.92069 1.07518 1.20481 0.94729 0.97591 0.95504 1.18050 0.97638 0.82893 1.12780 1.84801 1.54781 1.37090 1.36082 1.20858 0.87071 0.88535 0.87518 1.67915 1.23200 1.32865 1.01350 1.22907 0.85994 0.88787 0.98704 1.20830 1.07691 1.03190 0.96215 1.17549 0.78239 0.76071 0.80047 1.93192 1.95871 1.77583 1.48768 1.93238 1.36415 1.96276 1.89554 1.93236 1.90431 1.36552 1.95141 1.21308 0.92066 0.97658 0.88748 1.20764 1.05158 0.98438 0.91129 1.98381 1.97443 1.85201 1.18773 1.20560 0.98865 0.91540 0.99796 1.20900 1.00422 0.96471 1.02167 0.89576 0.87297 0.87458 0.79049 0.79118 0.87761 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.11 10.88 21.82 0.24 -39.87 16 2 C 0.04 1.72 5.14 85.23 0.44 2.15 16 3 Si 0.99 35.68 29.60 68.60 2.03 37.71 16 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.48 -24.42 9.04 23.39 0.21 -24.20 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 9 C 0.09 4.76 5.59 -21.28 -0.12 4.65 16 10 C -0.23 -11.08 9.74 22.48 0.22 -10.87 16 11 C -0.06 -2.90 9.56 22.11 0.21 -2.68 16 12 C -0.07 -3.21 5.15 22.80 0.12 -3.10 16 13 O -0.22 -9.05 9.42 -30.53 -0.29 -9.33 16 14 C 0.34 11.82 7.41 84.81 0.63 12.45 16 15 N -0.53 -18.77 9.10 -308.81 -2.81 -21.58 16 16 C 0.19 5.20 10.59 84.65 0.90 6.10 16 17 C -0.27 -6.03 5.38 -19.77 -0.11 -6.14 16 18 C 0.54 10.18 3.33 71.23 0.24 10.42 16 19 F -0.17 -3.39 15.99 44.97 0.72 -2.68 16 20 F -0.17 -3.31 17.25 44.97 0.78 -2.54 16 21 F -0.17 -3.20 17.24 44.97 0.78 -2.43 16 22 C 0.03 0.58 9.57 22.47 0.21 0.79 16 23 C -0.12 -3.42 6.36 22.52 0.14 -3.28 16 24 Cl -0.03 -0.67 28.54 -2.72 -0.08 -0.75 16 25 C -0.09 -4.22 9.92 22.11 0.22 -4.00 16 26 C -0.18 -9.29 8.66 22.48 0.19 -9.09 16 27 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 28 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.19 4.28 7.15 -2.91 -0.02 4.25 16 31 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.11 6.02 6.06 -2.91 -0.02 6.00 16 Total: -1.00 -56.52 326.42 6.07 -50.45 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.20 Total: 17.82 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.51 Total: -26.81 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -2.57 Total: -61.45 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.29 Total: -9.33 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 2.27 Total: -7.64 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -56.52 6.07 -50.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.675 kcal (2) G-P(sol) polarization free energy of solvation -56.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds