Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48494 * 109.47119 * 266.50125 * 3 2 1 5 5 H 1.48508 * 109.46706 * 26.49927 * 3 2 1 6 6 H 1.48493 * 109.47369 * 146.49578 * 3 2 1 7 7 C 1.40122 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99793 * 354.70577 * 7 2 1 9 9 C 1.46233 * 120.00062 * 174.70530 * 7 2 1 10 10 O 1.21666 * 119.99712 * 336.35026 * 9 7 2 11 11 N 1.34777 * 120.00561 * 156.35097 * 9 7 2 12 12 C 1.46499 * 119.99409 * 6.55019 * 11 9 7 13 13 C 1.50701 * 109.47354 * 266.99626 * 12 11 9 14 14 C 1.38238 * 119.99967 * 274.75037 * 13 12 11 15 15 C 1.38241 * 119.99818 * 179.76219 * 14 13 12 16 16 C 1.38231 * 119.99928 * 0.50478 * 15 14 13 17 17 C 1.38238 * 120.00245 * 359.74356 * 16 15 14 18 18 C 1.38233 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.34772 * 120.00671 * 186.54695 * 11 9 7 20 20 O 1.21551 * 120.00229 * 186.14474 * 19 11 9 21 21 N 1.34778 * 119.99740 * 6.14787 * 19 11 9 22 22 C 1.39920 * 119.99915 * 186.09279 * 21 19 11 23 23 C 1.38900 * 120.05980 * 324.13575 * 22 21 19 24 24 C 1.38104 * 119.98445 * 180.02562 * 23 22 21 25 25 C 1.38269 * 120.08966 * 359.97438 * 24 23 22 26 26 C 1.38492 * 120.11888 * 359.97438 * 25 24 23 27 27 F 1.35098 * 119.99205 * 179.97438 * 26 25 24 28 28 C 1.38349 * 120.01719 * 0.02562 * 26 25 24 29 29 H 0.97006 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47348 * 26.99617 * 12 11 9 31 31 H 1.09003 * 109.47353 * 147.00088 * 12 11 9 32 32 H 1.07997 * 119.99947 * 359.97438 * 14 13 12 33 33 H 1.07997 * 119.99801 * 180.22536 * 15 14 13 34 34 H 1.07995 * 119.99990 * 179.72518 * 16 15 14 35 35 H 1.07991 * 120.00256 * 179.97438 * 17 16 15 36 36 H 1.08007 * 119.99978 * 179.97438 * 18 17 16 37 37 H 0.96997 * 119.99903 * 6.09385 * 21 19 11 38 38 H 1.08005 * 120.00926 * 359.97438 * 23 22 21 39 39 H 1.07991 * 119.95436 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.94305 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.04847 * 180.27617 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5620 2.0036 -1.3974 5 1 1.4028 2.6729 0.6247 6 1 3.4990 1.4626 0.7728 7 6 2.0070 -1.2135 0.0005 8 1 1.4704 -2.1468 0.0873 9 6 3.4647 -1.2164 -0.1163 10 8 4.0355 -0.2731 -0.6308 11 7 4.1758 -2.2638 0.3458 12 6 3.4849 -3.4601 0.8335 13 6 3.2788 -3.3493 2.3222 14 6 4.2808 -3.7420 3.1898 15 6 4.0936 -3.6358 4.5554 16 6 2.9005 -3.1468 5.0535 17 6 1.8965 -2.7589 4.1860 18 6 2.0856 -2.8606 2.8204 19 6 5.5224 -2.2108 0.3592 20 8 6.1663 -3.1939 0.6699 21 7 6.1552 -1.0678 0.0282 22 6 7.5499 -1.0469 -0.0821 23 6 8.3273 -1.8131 0.7769 24 6 9.7037 -1.7909 0.6670 25 6 10.3096 -1.0070 -0.2975 26 6 9.5383 -0.2423 -1.1568 27 9 10.1330 0.5230 -2.0980 28 6 8.1590 -0.2611 -1.0509 29 1 -0.4850 0.8401 -0.0004 30 1 2.5179 -3.5484 0.3384 31 1 4.0870 -4.3420 0.6148 32 1 5.2112 -4.1286 2.8008 33 1 4.8778 -3.9392 5.2331 34 1 2.7526 -3.0680 6.1203 35 1 0.9643 -2.3772 4.5751 36 1 1.3010 -2.5579 2.1426 37 1 5.6437 -0.2597 -0.1336 38 1 7.8554 -2.4255 1.5311 39 1 10.3077 -2.3871 1.3348 40 1 11.3863 -0.9911 -0.3811 41 1 7.5569 0.3316 -1.7236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000170896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -46.394039 kcal Electronic energy + Delta-G solvation = -29594.437782 eV Core-core repulsion = 25354.334674 eV Total energy + Delta-G solvation = -4240.103108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.117 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.78882 -40.98719 -39.11922 -38.46209 -37.41028 -35.01012 -33.95579 -33.30371 -31.20790 -30.50507 -30.46668 -29.25356 -27.37598 -25.93583 -23.15451 -22.72772 -22.26875 -21.81264 -21.09297 -19.61776 -18.07164 -17.53975 -17.05716 -16.57103 -16.38283 -16.12001 -15.82643 -15.48858 -15.38277 -15.05540 -14.70973 -14.58853 -14.44716 -14.14783 -13.60678 -13.40867 -13.04516 -12.99108 -12.78844 -12.65958 -12.50958 -12.24202 -12.13055 -11.88782 -11.65991 -11.38520 -11.22779 -11.05206 -10.81931 -10.59696 -10.13544 -9.90623 -9.78135 -9.40639 -8.81998 -8.71339 -8.59875 -8.51972 -8.36605 -7.90166 -7.05165 -5.32756 1.29949 1.34009 1.63449 1.80524 2.81414 3.01547 3.26065 3.28402 3.37911 3.75830 3.95846 4.06738 4.12952 4.36332 4.57388 4.90957 4.94302 5.07086 5.20186 5.22399 5.33635 5.37652 5.50098 5.52559 5.60253 5.70122 5.87882 6.01062 6.08101 6.08849 6.18987 6.21195 6.35149 6.46054 6.49366 6.50563 6.75083 6.81012 6.88286 6.90853 7.09026 7.17953 7.24774 7.38678 7.59677 7.97475 8.25185 8.42667 8.91719 9.26926 9.92873 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.004584 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.333837 B = 6107.276128 C = 8227.215237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.105 3.895 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.308 1.308 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.103 0.897 9 C 0.535 3.465 10 O -0.592 6.592 11 N -0.565 5.565 12 C 0.162 3.838 13 C -0.102 4.102 14 C -0.100 4.100 15 C -0.135 4.135 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.083 4.083 19 C 0.709 3.291 20 O -0.580 6.580 21 N -0.670 5.670 22 C 0.202 3.798 23 C -0.137 4.137 24 C -0.076 4.076 25 C -0.183 4.183 26 C 0.114 3.886 27 F -0.143 7.143 28 C -0.186 4.186 29 H 0.290 0.710 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.426 0.574 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -3.975 5.473 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.116 4.116 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.238 1.238 6 H -0.188 1.188 7 C -0.539 4.539 8 H 0.121 0.879 9 C 0.351 3.649 10 O -0.483 6.483 11 N -0.307 5.307 12 C 0.040 3.960 13 C -0.103 4.103 14 C -0.119 4.119 15 C -0.154 4.154 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.102 4.102 19 C 0.413 3.587 20 O -0.458 6.458 21 N -0.338 5.338 22 C 0.104 3.896 23 C -0.158 4.158 24 C -0.094 4.094 25 C -0.202 4.202 26 C 0.094 3.906 27 F -0.121 7.121 28 C -0.208 4.208 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.285 0.715 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.721 -4.076 5.338 11.008 hybrid contribution 0.080 1.207 -0.231 1.231 sum 8.801 -2.870 5.107 10.572 Atomic orbital electron populations 1.69475 1.07806 1.30840 1.34803 1.25753 0.94881 1.01825 0.89183 0.85473 0.78448 0.77845 0.80054 1.19499 1.23791 1.18767 1.20720 0.87125 0.96348 1.49742 0.87880 1.18634 0.89607 0.79152 0.77548 1.89838 1.70282 1.36858 1.51359 1.46239 1.04166 1.19565 1.60705 1.20416 0.98722 0.86634 0.90238 1.20151 0.94539 1.00062 0.95586 1.21230 0.98732 0.98808 0.93083 1.21039 0.97466 1.01526 0.95326 1.21101 0.94060 0.99627 0.99208 1.21145 0.99135 1.00878 0.93682 1.21456 0.97595 0.95596 0.95521 1.16286 0.82074 0.83072 0.77279 1.90792 1.65117 1.35510 1.54384 1.44669 1.04652 1.14293 1.70138 1.17497 0.83636 0.95641 0.92794 1.21494 0.93237 1.01135 0.99942 1.20855 0.94242 0.97267 0.97072 1.21002 1.00169 1.00732 0.98347 1.17311 0.90395 0.93592 0.89299 1.91476 1.84010 1.73610 1.63021 1.20859 0.93268 1.05891 1.00769 0.89944 0.87665 0.89243 0.85632 0.86730 0.86805 0.86365 0.84268 0.71476 0.83588 0.85052 0.85174 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.42 13.92 55.55 0.77 -18.65 16 2 C 0.11 2.56 5.52 -17.35 -0.10 2.46 16 3 Si 0.95 21.76 25.98 -169.99 -4.42 17.34 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.31 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.25 6.65 56.52 0.38 -5.88 16 7 C -0.51 -11.91 8.14 -35.67 -0.29 -12.20 16 8 H 0.10 2.37 5.49 -52.48 -0.29 2.08 16 9 C 0.53 12.36 7.01 -13.05 -0.09 12.27 16 10 O -0.59 -14.42 9.59 5.22 0.05 -14.37 16 11 N -0.57 -11.66 2.55 -123.62 -0.32 -11.98 16 12 C 0.16 2.86 5.06 -5.19 -0.03 2.84 16 13 C -0.10 -1.75 5.44 -104.62 -0.57 -2.32 16 14 C -0.10 -1.61 9.67 -39.58 -0.38 -1.99 16 15 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 16 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 17 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 18 C -0.08 -1.42 9.29 -39.58 -0.37 -1.78 16 19 C 0.71 14.64 8.02 -86.92 -0.70 13.94 16 20 O -0.58 -11.83 12.48 5.32 0.07 -11.77 16 21 N -0.67 -13.43 4.99 -14.24 -0.07 -13.50 16 22 C 0.20 3.58 6.29 -83.71 -0.53 3.05 16 23 C -0.14 -2.20 8.70 -39.39 -0.34 -2.54 16 24 C -0.08 -0.98 10.04 -39.62 -0.40 -1.38 16 25 C -0.18 -2.35 10.02 -39.48 -0.40 -2.74 16 26 C 0.11 1.68 7.30 -39.45 -0.29 1.39 16 27 F -0.14 -2.09 17.27 2.25 0.04 -2.05 16 28 C -0.19 -3.03 9.95 -39.33 -0.39 -3.42 16 29 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 30 H 0.11 1.79 5.94 -51.93 -0.31 1.48 16 31 H 0.09 1.48 7.41 -51.93 -0.38 1.09 16 32 H 0.13 2.04 7.20 -52.49 -0.38 1.66 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.14 2.51 6.44 -52.48 -0.34 2.18 16 37 H 0.43 9.09 5.23 -43.36 -0.23 8.87 16 38 H 0.15 2.46 6.23 -52.48 -0.33 2.14 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -26.38 348.82 -8.62 -35.00 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -3.95 Total: 13.95 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -6.06 Total: 0.76 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.39 Total: -44.12 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.12 Total: -26.14 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.42 Total: 17.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.38 -8.62 -35.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds