Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48494 * 109.47119 * 266.50125 * 3 2 1 5 5 H 1.48508 * 109.46706 * 26.49927 * 3 2 1 6 6 H 1.48493 * 109.47369 * 146.49578 * 3 2 1 7 7 C 1.40122 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99793 * 354.70577 * 7 2 1 9 9 C 1.46233 * 120.00062 * 174.70530 * 7 2 1 10 10 O 1.21666 * 119.99712 * 336.35026 * 9 7 2 11 11 N 1.34777 * 120.00561 * 156.35097 * 9 7 2 12 12 C 1.46499 * 119.99409 * 6.55019 * 11 9 7 13 13 C 1.50701 * 109.47354 * 266.99626 * 12 11 9 14 14 C 1.38238 * 119.99967 * 274.75037 * 13 12 11 15 15 C 1.38241 * 119.99818 * 179.76219 * 14 13 12 16 16 C 1.38231 * 119.99928 * 0.50478 * 15 14 13 17 17 C 1.38238 * 120.00245 * 359.74356 * 16 15 14 18 18 C 1.38233 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.34772 * 120.00671 * 186.54695 * 11 9 7 20 20 O 1.21551 * 120.00229 * 186.14474 * 19 11 9 21 21 N 1.34778 * 119.99740 * 6.14787 * 19 11 9 22 22 C 1.39920 * 119.99915 * 186.09279 * 21 19 11 23 23 C 1.38900 * 120.05980 * 324.13575 * 22 21 19 24 24 C 1.38104 * 119.98445 * 180.02562 * 23 22 21 25 25 C 1.38269 * 120.08966 * 359.97438 * 24 23 22 26 26 C 1.38492 * 120.11888 * 359.97438 * 25 24 23 27 27 F 1.35098 * 119.99205 * 179.97438 * 26 25 24 28 28 C 1.38349 * 120.01719 * 0.02562 * 26 25 24 29 29 H 0.97006 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47348 * 26.99617 * 12 11 9 31 31 H 1.09003 * 109.47353 * 147.00088 * 12 11 9 32 32 H 1.07997 * 119.99947 * 359.97438 * 14 13 12 33 33 H 1.07997 * 119.99801 * 180.22536 * 15 14 13 34 34 H 1.07995 * 119.99990 * 179.72518 * 16 15 14 35 35 H 1.07991 * 120.00256 * 179.97438 * 17 16 15 36 36 H 1.08007 * 119.99978 * 179.97438 * 18 17 16 37 37 H 0.96997 * 119.99903 * 6.09385 * 21 19 11 38 38 H 1.08005 * 120.00926 * 359.97438 * 23 22 21 39 39 H 1.07991 * 119.95436 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.94305 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.04847 * 180.27617 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5620 2.0036 -1.3974 5 1 1.4028 2.6729 0.6247 6 1 3.4990 1.4626 0.7728 7 6 2.0070 -1.2135 0.0005 8 1 1.4704 -2.1468 0.0873 9 6 3.4647 -1.2164 -0.1163 10 8 4.0355 -0.2731 -0.6308 11 7 4.1758 -2.2638 0.3458 12 6 3.4849 -3.4601 0.8335 13 6 3.2788 -3.3493 2.3222 14 6 4.2808 -3.7420 3.1898 15 6 4.0936 -3.6358 4.5554 16 6 2.9005 -3.1468 5.0535 17 6 1.8965 -2.7589 4.1860 18 6 2.0856 -2.8606 2.8204 19 6 5.5224 -2.2108 0.3592 20 8 6.1663 -3.1939 0.6699 21 7 6.1552 -1.0678 0.0282 22 6 7.5499 -1.0469 -0.0821 23 6 8.3273 -1.8131 0.7769 24 6 9.7037 -1.7909 0.6670 25 6 10.3096 -1.0070 -0.2975 26 6 9.5383 -0.2423 -1.1568 27 9 10.1330 0.5230 -2.0980 28 6 8.1590 -0.2611 -1.0509 29 1 -0.4850 0.8401 -0.0004 30 1 2.5179 -3.5484 0.3384 31 1 4.0870 -4.3420 0.6148 32 1 5.2112 -4.1286 2.8008 33 1 4.8778 -3.9392 5.2331 34 1 2.7526 -3.0680 6.1203 35 1 0.9643 -2.3772 4.5751 36 1 1.3010 -2.5579 2.1426 37 1 5.6437 -0.2597 -0.1336 38 1 7.8554 -2.4255 1.5311 39 1 10.3077 -2.3871 1.3348 40 1 11.3863 -0.9911 -0.3811 41 1 7.5569 0.3316 -1.7236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000170896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -58.416626 kcal Electronic energy + Delta-G solvation = -29594.959121 eV Core-core repulsion = 25354.334674 eV Total energy + Delta-G solvation = -4240.624447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.117 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.94981 -42.56359 -40.41739 -39.78292 -39.00789 -36.47714 -35.52928 -35.12095 -32.53040 -31.71014 -31.65651 -30.56085 -29.13843 -27.30257 -24.70215 -23.92602 -23.54261 -23.17242 -22.34805 -21.17722 -19.48409 -19.21980 -18.65672 -17.98725 -17.87252 -17.31833 -17.13250 -16.75814 -16.70540 -16.60220 -16.18530 -15.87538 -15.78656 -15.62365 -15.05737 -14.72639 -14.63143 -14.38526 -14.27247 -14.16081 -13.97484 -13.48817 -13.45902 -13.20895 -13.11202 -13.01190 -12.73020 -12.37108 -12.23008 -11.93210 -11.60437 -11.55330 -11.29832 -11.21305 -10.44475 -10.36391 -9.87798 -9.73251 -9.64880 -9.22033 -8.92562 -7.19210 0.09104 0.16052 0.40823 0.59236 1.06248 1.30447 1.43449 1.53464 1.69824 2.12768 2.24804 2.64760 2.75531 3.05032 3.09071 3.31033 3.79854 3.92698 3.95445 4.03427 4.14049 4.22596 4.29610 4.36498 4.38406 4.44808 4.49267 4.63910 4.76751 4.81427 4.95711 5.08546 5.14395 5.19443 5.26335 5.29205 5.35720 5.46369 5.48572 5.63350 5.68844 5.79183 5.85644 5.96064 6.15155 6.19770 6.54272 6.67451 7.30984 7.45652 8.09576 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.004584 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.333837 B = 6107.276128 C = 8227.215237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.084 3.916 3 Si 0.986 3.014 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.512 4.512 8 H 0.103 0.897 9 C 0.535 3.465 10 O -0.609 6.609 11 N -0.567 5.567 12 C 0.161 3.839 13 C -0.117 4.117 14 C -0.110 4.110 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.136 4.136 18 C -0.101 4.101 19 C 0.704 3.296 20 O -0.581 6.581 21 N -0.677 5.677 22 C 0.170 3.830 23 C -0.146 4.146 24 C -0.062 4.062 25 C -0.164 4.164 26 C 0.107 3.893 27 F -0.142 7.142 28 C -0.197 4.197 29 H 0.298 0.702 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.419 0.581 38 H 0.135 0.865 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.439 -4.438 7.250 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.136 4.136 3 Si 0.816 3.184 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.546 4.546 8 H 0.121 0.879 9 C 0.350 3.650 10 O -0.501 6.501 11 N -0.307 5.307 12 C 0.040 3.960 13 C -0.118 4.118 14 C -0.129 4.129 15 C -0.151 4.151 16 C -0.133 4.133 17 C -0.154 4.154 18 C -0.120 4.120 19 C 0.407 3.593 20 O -0.459 6.459 21 N -0.343 5.343 22 C 0.074 3.926 23 C -0.167 4.167 24 C -0.080 4.080 25 C -0.183 4.183 26 C 0.088 3.912 27 F -0.121 7.121 28 C -0.219 4.219 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.275 0.725 38 H 0.153 0.847 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.810 -4.557 7.124 13.725 hybrid contribution -0.438 1.312 -0.761 1.579 sum 10.372 -3.245 6.363 12.594 Atomic orbital electron populations 1.69467 1.08014 1.31705 1.35484 1.26075 0.95261 1.02937 0.89362 0.85006 0.77337 0.77157 0.78925 1.20855 1.22003 1.20656 1.20804 0.87522 0.96391 1.49922 0.87940 1.18638 0.89642 0.79503 0.77241 1.89838 1.70780 1.37678 1.51849 1.46205 1.04401 1.19702 1.60438 1.20535 0.98503 0.85799 0.91142 1.20094 0.95202 1.01353 0.95109 1.21280 0.98239 0.99308 0.94060 1.21394 0.98423 1.00421 0.94839 1.21483 0.93128 0.97937 1.00793 1.21413 1.00401 1.00578 0.92990 1.21391 0.97284 0.96890 0.96441 1.16355 0.82002 0.83371 0.77526 1.90770 1.65006 1.35512 1.54654 1.44587 1.05874 1.13638 1.70214 1.17741 0.82665 0.97678 0.94550 1.21533 0.94667 1.00926 0.99547 1.21249 0.93012 0.96678 0.97054 1.21416 1.01843 0.98556 0.96509 1.17459 0.89925 0.94043 0.89813 1.91479 1.83791 1.73703 1.63121 1.20870 0.94281 1.05978 1.00745 0.89073 0.87779 0.88441 0.86116 0.83867 0.83362 0.84677 0.86152 0.72456 0.84710 0.81121 0.81497 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.92 13.92 21.85 0.30 -39.61 16 2 C 0.08 4.12 5.52 85.33 0.47 4.60 16 3 Si 0.99 45.24 25.98 68.60 1.78 47.03 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -13.61 6.65 99.48 0.66 -12.95 16 7 C -0.51 -24.82 8.14 24.81 0.20 -24.62 16 8 H 0.10 4.89 5.49 -2.91 -0.02 4.87 16 9 C 0.53 25.49 7.01 86.32 0.61 26.10 16 10 O -0.61 -30.64 9.59 -4.24 -0.04 -30.68 16 11 N -0.57 -24.06 2.55 -781.53 -2.00 -26.05 16 12 C 0.16 5.87 5.06 85.63 0.43 6.31 16 13 C -0.12 -4.04 5.44 -19.86 -0.11 -4.15 16 14 C -0.11 -3.48 9.67 22.27 0.22 -3.27 16 15 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 16 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 17 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 18 C -0.10 -3.49 9.29 22.27 0.21 -3.29 16 19 C 0.70 29.72 8.02 179.06 1.44 31.15 16 20 O -0.58 -23.92 12.48 -3.88 -0.05 -23.97 16 21 N -0.68 -27.97 4.99 -317.25 -1.58 -29.55 16 22 C 0.17 6.06 6.29 38.15 0.24 6.30 16 23 C -0.15 -4.51 8.70 22.40 0.19 -4.32 16 24 C -0.06 -1.39 10.04 22.25 0.22 -1.17 16 25 C -0.16 -3.61 10.02 22.34 0.22 -3.39 16 26 C 0.11 2.99 7.30 22.36 0.16 3.15 16 27 F -0.14 -3.94 17.27 44.97 0.78 -3.16 16 28 C -0.20 -6.44 9.95 22.44 0.22 -6.22 16 29 H 0.30 13.34 8.29 -92.70 -0.77 12.57 16 30 H 0.10 3.73 5.94 -2.39 -0.01 3.71 16 31 H 0.10 3.31 7.41 -2.39 -0.02 3.29 16 32 H 0.12 3.88 7.20 -2.91 -0.02 3.86 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.14 3.37 8.06 -2.92 -0.02 3.34 16 36 H 0.12 4.54 6.44 -2.91 -0.02 4.52 16 37 H 0.42 18.64 5.23 -133.00 -0.70 17.94 16 38 H 0.14 4.46 6.23 -2.91 -0.02 4.44 16 39 H 0.17 2.52 8.06 -2.92 -0.02 2.50 16 40 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -57.44 348.82 4.96 -52.47 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.37 Total: 36.00 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.40 Total: 17.54 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -3.27 Total: -95.22 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.09 Total: -54.65 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.78 Total: 47.03 kcal Total: -57.44 4.96 -52.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.944 kcal (2) G-P(sol) polarization free energy of solvation -57.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds