Wall clock time and date at job start Tue Mar 31 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35965 * 117.00205 * 2 1 4 4 C 1.37956 * 119.97459 * 0.02562 * 3 2 1 5 5 C 1.40230 * 119.83507 * 179.97438 * 4 3 2 6 6 C 1.46683 * 120.09340 * 179.97438 * 5 4 3 7 7 N 1.30742 * 119.99596 * 180.02562 * 6 5 4 8 8 N 1.40099 * 120.00188 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00253 * 179.97438 * 8 7 6 10 10 O 1.21994 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.40574 * 120.00021 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99883 * 359.97438 * 11 9 8 13 13 C 1.40184 * 119.99855 * 180.02562 * 11 9 8 14 14 N 1.30616 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99753 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47376 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47051 * 120.00290 * 15 13 11 18 18 H 1.48503 * 109.47138 * 239.99981 * 15 13 11 19 19 C 1.40342 * 119.80159 * 0.02562 * 5 4 3 20 20 C 1.37649 * 119.96188 * 359.97438 * 19 5 4 21 21 Br 1.89101 * 119.92328 * 179.97438 * 20 19 5 22 22 C 1.39187 * 120.15729 * 359.75044 * 20 19 5 23 23 O 1.35746 * 119.90074 * 180.25711 * 22 20 19 24 24 H 1.08996 * 109.47672 * 59.99778 * 1 2 3 25 25 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47220 * 299.99834 * 1 2 3 27 27 H 1.07994 * 120.08247 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.00707 * 0.02562 * 6 5 4 29 29 H 0.97003 * 119.99712 * 0.02562 * 8 7 6 30 30 H 0.96996 * 120.00211 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.01781 * 179.97438 * 19 5 4 32 32 H 0.96700 * 113.99720 * 270.26033 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2944 2.3681 0.0005 5 6 1.9341 3.6160 0.0011 6 6 1.1403 4.8495 0.0011 7 7 1.7387 6.0119 0.0011 8 7 0.9806 7.1901 0.0016 9 6 1.5974 8.3883 0.0021 10 8 2.8160 8.4471 0.0026 11 6 0.8367 9.5705 0.0032 12 1 -0.2420 9.5184 0.0032 13 6 1.4784 10.8168 0.0032 14 7 2.7830 10.8798 0.0017 15 14 0.4675 12.3877 0.0040 16 1 -0.9777 12.0464 0.0038 17 1 0.7888 13.1826 1.2165 18 1 0.7878 13.1831 -1.2085 19 6 3.3360 3.6811 0.0005 20 6 4.0781 2.5218 0.0000 21 35 5.9670 2.6108 -0.0015 22 6 3.4414 1.2841 0.0052 23 8 4.1783 0.1441 0.0100 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2159 2.3127 0.0014 28 1 0.0616 4.7975 0.0011 29 1 0.0117 7.1433 0.0024 30 1 3.2270 11.7422 0.0021 31 1 3.8323 4.6404 0.0005 32 1 4.3951 -0.1877 -0.8721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000274428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:09 Heat of formation + Delta-G solvation = -42.364474 kcal Electronic energy + Delta-G solvation = -20323.191919 eV Core-core repulsion = 16718.197127 eV Total energy + Delta-G solvation = -3604.994792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 342.005 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50342 -38.09699 -37.77871 -36.90382 -35.02024 -32.75433 -32.19358 -31.16868 -29.26209 -29.07534 -27.45882 -26.47025 -23.71626 -22.18941 -20.91355 -19.88874 -18.74374 -17.96150 -17.05256 -16.99335 -16.13799 -15.72320 -15.60493 -15.35331 -14.61331 -14.18053 -14.14839 -13.88250 -13.46383 -12.81173 -12.77702 -12.43461 -12.14133 -11.72443 -11.67583 -11.52080 -11.43831 -11.12072 -10.77488 -10.73388 -10.40215 -10.35685 -10.22235 -9.68876 -9.11610 -8.79963 -8.40312 -7.85999 -7.39950 -6.47416 -5.03652 0.65141 1.16162 1.55255 2.54225 2.99701 3.04812 3.06965 3.11956 3.54749 3.64436 3.99974 4.02155 4.36833 4.71574 4.87291 4.91143 4.92408 5.08149 5.16836 5.26309 5.44101 5.64770 5.67013 5.91017 6.07880 6.21006 6.45930 6.60358 6.99909 7.13734 7.55426 7.72433 7.89682 8.49484 8.68692 9.17192 10.31077 10.54082 Molecular weight = 342.00amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002877 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.101666 B = 9731.212251 C =11535.636498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.109 3.891 4 C -0.174 4.174 5 C 0.025 3.975 6 C 0.003 3.997 7 N -0.172 5.172 8 N -0.581 5.581 9 C 0.554 3.446 10 O -0.550 6.550 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.741 5.741 15 Si 0.918 3.082 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.088 4.088 20 C -0.079 4.079 21 Br -0.031 7.031 22 C 0.092 3.908 23 O -0.474 6.474 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.112 0.888 29 H 0.371 0.629 30 H 0.275 0.725 31 H 0.154 0.846 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -20.056 -1.645 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.062 3.938 4 C -0.196 4.196 5 C 0.022 3.978 6 C -0.205 4.205 7 N 0.017 4.983 8 N -0.328 5.328 9 C 0.363 3.637 10 O -0.429 6.429 11 C -0.571 4.571 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.368 5.368 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.110 4.110 20 C -0.159 4.159 21 Br 0.055 6.945 22 C 0.043 3.957 23 O -0.283 6.283 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.129 0.871 29 H 0.207 0.793 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.173 -19.295 -1.036 19.323 hybrid contribution -2.588 0.508 -0.494 2.684 sum -2.761 -18.787 -1.530 19.050 Atomic orbital electron populations 1.23116 0.78319 1.04038 1.01635 1.86125 1.21270 1.25766 1.88812 1.18941 0.90846 0.84872 0.99098 1.21271 1.00290 0.90595 1.07402 1.18256 0.91798 0.90875 0.96916 1.23755 0.96721 0.90298 1.09703 1.74821 1.27340 0.93823 1.02319 1.48229 1.07023 1.02236 1.75287 1.16843 0.88536 0.79693 0.78626 1.90747 1.13741 1.84666 1.53741 1.19750 0.94429 0.89637 1.53237 0.90960 1.25779 0.94895 1.00583 0.92438 1.70018 1.09008 1.26492 1.31313 0.86141 0.80513 0.80588 0.78576 1.18500 1.19769 1.19781 1.21418 0.92922 0.97921 0.98711 1.21932 0.91413 0.94452 1.08120 1.96719 1.01377 1.98917 1.97521 1.17446 0.86217 0.85450 1.06631 1.84847 1.71752 1.38569 1.33132 0.92443 0.88151 0.92391 0.84184 0.87087 0.79345 0.91384 0.82872 0.75885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.36 10.28 -34.20 -0.35 -3.71 16 3 C 0.11 1.34 6.70 -39.14 -0.26 1.08 16 4 C -0.17 -2.06 8.78 -38.94 -0.34 -2.40 16 5 C 0.02 0.37 5.88 -104.95 -0.62 -0.25 16 6 C 0.00 0.05 10.75 -14.61 -0.16 -0.11 16 7 N -0.17 -3.69 10.18 32.12 0.33 -3.36 16 8 N -0.58 -13.34 6.26 28.90 0.18 -13.16 16 9 C 0.55 15.67 7.65 -15.38 -0.12 15.55 16 10 O -0.55 -17.97 15.19 4.92 0.07 -17.90 16 11 C -0.53 -14.36 9.25 -37.97 -0.35 -14.72 16 12 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 13 C 0.09 2.31 5.50 -17.34 -0.10 2.21 16 14 N -0.74 -21.29 11.70 55.56 0.65 -20.64 16 15 Si 0.92 18.88 29.56 -169.99 -5.02 13.86 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.09 -1.40 9.31 -39.01 -0.36 -1.76 16 20 C -0.08 -1.14 6.23 -39.44 -0.25 -1.39 16 21 Br -0.03 -0.42 33.14 -68.01 -2.25 -2.68 16 22 C 0.09 1.21 6.73 -38.68 -0.26 0.95 16 23 O -0.47 -5.60 12.59 -33.52 -0.42 -6.02 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.14 1.24 6.27 -52.49 -0.33 0.91 16 28 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 29 H 0.37 7.02 8.61 -182.60 -1.57 5.45 16 30 H 0.28 7.05 8.29 -40.82 -0.34 6.71 16 31 H 0.15 2.80 7.54 -52.48 -0.40 2.41 16 32 H 0.39 2.92 9.06 45.56 0.41 3.33 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -35.41 315.94 -6.95 -42.36 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.07 Total: 6.14 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.82 Total: 0.34 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 1.16 Total: -37.15 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.70 Total: -27.63 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.25 Total: -2.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.41 -6.95 -42.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000274428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.005 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds