Wall clock time and date at job start Tue Mar 31 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35965 * 117.00205 * 2 1 4 4 C 1.37956 * 119.97459 * 0.02562 * 3 2 1 5 5 C 1.40230 * 119.83507 * 179.97438 * 4 3 2 6 6 C 1.46683 * 120.09340 * 179.97438 * 5 4 3 7 7 N 1.30742 * 119.99596 * 180.02562 * 6 5 4 8 8 N 1.40099 * 120.00188 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00253 * 179.97438 * 8 7 6 10 10 O 1.21994 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.40574 * 120.00021 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99883 * 359.97438 * 11 9 8 13 13 C 1.40184 * 119.99855 * 180.02562 * 11 9 8 14 14 N 1.30616 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99753 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47376 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47051 * 120.00290 * 15 13 11 18 18 H 1.48503 * 109.47138 * 239.99981 * 15 13 11 19 19 C 1.40342 * 119.80159 * 0.02562 * 5 4 3 20 20 C 1.37649 * 119.96188 * 359.97438 * 19 5 4 21 21 Br 1.89101 * 119.92328 * 179.97438 * 20 19 5 22 22 C 1.39187 * 120.15729 * 359.75044 * 20 19 5 23 23 O 1.35746 * 119.90074 * 180.25711 * 22 20 19 24 24 H 1.08996 * 109.47672 * 59.99778 * 1 2 3 25 25 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47220 * 299.99834 * 1 2 3 27 27 H 1.07994 * 120.08247 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.00707 * 0.02562 * 6 5 4 29 29 H 0.97003 * 119.99712 * 0.02562 * 8 7 6 30 30 H 0.96996 * 120.00211 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.01781 * 179.97438 * 19 5 4 32 32 H 0.96700 * 113.99720 * 270.26033 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2944 2.3681 0.0005 5 6 1.9341 3.6160 0.0011 6 6 1.1403 4.8495 0.0011 7 7 1.7387 6.0119 0.0011 8 7 0.9806 7.1901 0.0016 9 6 1.5974 8.3883 0.0021 10 8 2.8160 8.4471 0.0026 11 6 0.8367 9.5705 0.0032 12 1 -0.2420 9.5184 0.0032 13 6 1.4784 10.8168 0.0032 14 7 2.7830 10.8798 0.0017 15 14 0.4675 12.3877 0.0040 16 1 -0.9777 12.0464 0.0038 17 1 0.7888 13.1826 1.2165 18 1 0.7878 13.1831 -1.2085 19 6 3.3360 3.6811 0.0005 20 6 4.0781 2.5218 0.0000 21 35 5.9670 2.6108 -0.0015 22 6 3.4414 1.2841 0.0052 23 8 4.1783 0.1441 0.0100 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2159 2.3127 0.0014 28 1 0.0616 4.7975 0.0011 29 1 0.0117 7.1433 0.0024 30 1 3.2270 11.7422 0.0021 31 1 3.8323 4.6404 0.0005 32 1 4.3951 -0.1877 -0.8721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000274428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:08 Heat of formation + Delta-G solvation = -70.347542 kcal Electronic energy + Delta-G solvation = -20324.405356 eV Core-core repulsion = 16718.197127 eV Total energy + Delta-G solvation = -3606.208229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 342.005 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48206 -39.66599 -38.92897 -38.14452 -36.60372 -34.72801 -33.48631 -32.56066 -30.48624 -30.21776 -28.68289 -27.84649 -25.01516 -23.23629 -22.43113 -21.47190 -19.79281 -19.52290 -18.35374 -18.13226 -17.60519 -17.02500 -16.90724 -16.29344 -15.99334 -15.50590 -15.24175 -15.11804 -14.94861 -14.69997 -14.03091 -13.49822 -13.27459 -13.19761 -13.10865 -12.74732 -12.71240 -12.43699 -12.38129 -11.98036 -11.75938 -11.57228 -11.33909 -11.05920 -11.01443 -10.10284 -10.00414 -9.51038 -8.90861 -8.43623 -7.11003 -0.47454 0.05818 0.46660 1.25727 1.39911 1.43886 1.59709 1.99142 2.24809 2.32996 2.36893 2.56303 3.04472 3.60171 3.63470 3.90647 3.93319 4.05447 4.35742 4.39930 4.48642 4.54584 4.72223 4.84866 4.96490 5.02203 5.17745 5.29486 5.35868 5.79138 6.00175 6.19865 6.67112 6.72255 6.87951 7.41402 8.39736 8.57019 Molecular weight = 342.00amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.002877 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.101666 B = 9731.212251 C =11535.636498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.111 3.889 4 C -0.143 4.143 5 C -0.004 4.004 6 C 0.059 3.941 7 N -0.251 5.251 8 N -0.589 5.589 9 C 0.542 3.458 10 O -0.615 6.615 11 C -0.558 4.558 12 H 0.098 0.902 13 C 0.029 3.971 14 N -0.800 5.800 15 Si 1.010 2.990 16 H -0.241 1.241 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.101 4.101 20 C -0.093 4.093 21 Br -0.032 7.032 22 C 0.104 3.896 23 O -0.480 6.480 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.180 0.820 28 H 0.155 0.845 29 H 0.387 0.613 30 H 0.281 0.719 31 H 0.119 0.881 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -22.015 -1.754 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.229 6.229 3 C 0.064 3.936 4 C -0.164 4.164 5 C -0.007 4.007 6 C -0.151 4.151 7 N -0.059 5.059 8 N -0.335 5.335 9 C 0.352 3.648 10 O -0.500 6.500 11 C -0.594 4.594 12 H 0.116 0.884 13 C -0.190 4.190 14 N -0.428 5.428 15 Si 0.828 3.172 16 H -0.164 1.164 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.124 4.124 20 C -0.173 4.173 21 Br 0.054 6.946 22 C 0.054 3.946 23 O -0.292 6.292 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.087 0.913 27 H 0.198 0.802 28 H 0.172 0.828 29 H 0.226 0.774 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.447 -21.326 -1.159 21.634 hybrid contribution -1.605 0.585 -0.469 1.771 sum -5.051 -20.741 -1.628 21.410 Atomic orbital electron populations 1.23511 0.75855 1.06116 1.02905 1.86144 1.23745 1.24635 1.88348 1.18949 0.90541 0.85776 0.98354 1.21539 1.02081 0.88778 1.04034 1.18311 0.91195 0.91506 0.99731 1.24457 0.98984 0.89282 1.02352 1.74918 1.28342 0.94535 1.08093 1.47340 1.07471 1.01975 1.76701 1.17206 0.87976 0.81673 0.77948 1.90682 1.16230 1.86309 1.56758 1.20316 0.95722 0.90057 1.53350 0.88408 1.27164 0.96032 1.04940 0.90840 1.70192 1.11774 1.28007 1.32800 0.84794 0.79134 0.74527 0.78741 1.16373 1.19131 1.19106 1.21226 0.94019 0.97074 1.00043 1.21952 0.91501 0.94656 1.09235 1.96702 1.01394 1.98970 1.97577 1.17558 0.87048 0.85222 1.04730 1.84783 1.71652 1.37795 1.34968 0.90854 0.85980 0.91268 0.80234 0.82833 0.77423 0.90827 0.86320 0.73460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -5.61 10.28 -79.22 -0.81 -6.43 16 3 C 0.11 2.36 6.70 22.56 0.15 2.51 16 4 C -0.14 -2.84 8.78 22.69 0.20 -2.64 16 5 C 0.00 -0.11 5.88 -20.08 -0.12 -0.23 16 6 C 0.06 1.82 10.75 87.06 0.94 2.75 16 7 N -0.25 -11.10 10.18 -52.28 -0.53 -11.64 16 8 N -0.59 -27.82 6.26 -180.57 -1.13 -28.95 16 9 C 0.54 32.16 7.65 84.81 0.65 32.81 16 10 O -0.61 -42.94 15.19 -5.30 -0.08 -43.02 16 11 C -0.56 -30.73 9.25 23.31 0.22 -30.52 16 12 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 13 C 0.03 1.56 5.50 85.35 0.47 2.03 16 14 N -0.80 -48.08 11.70 21.86 0.26 -47.83 16 15 Si 1.01 38.73 29.56 68.60 2.03 40.76 16 16 H -0.24 -8.35 7.11 99.48 0.71 -7.65 16 17 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 C -0.10 -3.30 9.31 22.64 0.21 -3.09 16 20 C -0.09 -2.67 6.23 22.36 0.14 -2.53 16 21 Br -0.03 -0.89 33.14 -20.37 -0.68 -1.56 16 22 C 0.10 2.55 6.73 22.85 0.15 2.70 16 23 O -0.48 -10.29 12.59 -76.78 -0.97 -11.25 16 24 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 25 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.07 0.48 7.66 -2.39 -0.02 0.47 16 27 H 0.18 2.09 6.27 -2.91 -0.02 2.07 16 28 H 0.15 3.34 8.03 -2.91 -0.02 3.32 16 29 H 0.39 14.68 8.61 -213.32 -1.84 12.84 16 30 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 31 H 0.12 4.73 7.54 -2.91 -0.02 4.71 16 32 H 0.41 5.18 9.06 -74.06 -0.67 4.51 16 Total: -1.00 -83.90 315.94 0.90 -83.00 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -1.30 Total: 21.91 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.12 Total: 5.00 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.41 Total: -88.41 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -1.86 Total: -60.70 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.68 Total: -1.56 kcal Total: -83.90 0.90 -83.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000274428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.649 kcal (2) G-P(sol) polarization free energy of solvation -83.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds