Wall clock time and date at job start Tue Mar 31 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36578 * 119.34803 * 2 1 4 4 N 1.36096 * 120.53743 * 0.02562 * 3 2 1 5 5 C 1.46893 * 110.99968 * 268.10639 * 4 3 2 6 6 C 1.50706 * 109.47187 * 181.72413 * 5 4 3 7 7 C 1.38233 * 120.00017 * 269.73244 * 6 5 4 8 8 C 1.38232 * 119.99853 * 179.76530 * 7 6 5 9 9 C 1.38233 * 120.00311 * 0.50438 * 8 7 6 10 10 C 1.38242 * 119.99840 * 359.74376 * 9 8 7 11 11 C 1.38235 * 119.99961 * 89.99927 * 6 5 4 12 12 C 1.40602 * 118.91764 * 179.97438 * 3 2 1 13 13 C 1.46555 * 121.06561 * 180.02562 * 12 3 2 14 14 O 1.22007 * 120.00096 * 354.61072 * 13 12 3 15 15 C 1.41795 * 120.00116 * 174.60910 * 13 12 3 16 16 H 1.07998 * 119.99772 * 335.15132 * 15 13 12 17 17 C 1.40241 * 120.00038 * 155.14822 * 15 13 12 18 18 N 1.30572 * 120.00169 * 172.23838 * 17 15 13 19 19 Si 1.86800 * 119.99694 * 352.24498 * 17 15 13 20 20 H 1.48497 * 109.47457 * 85.68077 * 19 17 15 21 21 H 1.48507 * 109.46718 * 205.68046 * 19 17 15 22 22 H 1.48495 * 109.47277 * 325.67591 * 19 17 15 23 23 C 1.46814 * 117.86639 * 359.79886 * 12 3 2 24 24 O 1.21720 * 120.68676 * 180.23430 * 23 12 3 25 25 N 1.34898 * 118.62070 * 0.44429 * 23 12 3 26 26 C 1.46498 * 119.56641 * 179.79274 * 25 23 12 27 27 C 1.34220 * 119.34183 * 179.97438 * 2 1 3 28 28 O 1.21551 * 118.78781 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47596 * 175.16888 * 1 2 3 30 30 H 1.09004 * 109.46518 * 295.16266 * 1 2 3 31 31 H 1.09000 * 109.47313 * 55.15547 * 1 2 3 32 32 H 1.00897 * 111.00265 * 32.06541 * 4 3 2 33 33 H 1.08998 * 109.47208 * 301.72137 * 5 4 3 34 34 H 1.09000 * 109.47287 * 61.72907 * 5 4 3 35 35 H 1.07998 * 120.00012 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.00190 * 180.22494 * 8 7 6 37 37 H 1.08003 * 120.00437 * 179.72913 * 9 8 7 38 38 H 1.07996 * 120.00042 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99905 * 0.02562 * 11 6 5 40 40 H 0.96995 * 120.00289 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47517 * 269.72515 * 26 25 23 42 42 H 1.08998 * 109.46749 * 149.72772 * 26 25 23 43 43 H 1.08996 * 109.47120 * 29.73040 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1344 1.1905 0.0000 4 7 1.4515 2.3678 0.0005 5 6 1.2261 2.8462 -1.3699 6 6 0.5063 4.1696 -1.3280 7 6 -0.8755 4.2056 -1.3407 8 6 -1.5356 5.4193 -1.2974 9 6 -0.8140 6.5974 -1.2518 10 6 0.5679 6.5617 -1.2443 11 6 1.2280 5.3477 -1.2824 12 6 3.5404 1.1799 0.0006 13 6 4.3060 2.4296 0.0011 14 8 3.7278 3.4993 -0.0981 15 6 5.7188 2.3954 0.1171 16 1 6.2014 1.5541 0.5922 17 6 6.4894 3.4540 -0.3853 18 7 7.7724 3.4982 -0.1467 19 14 5.6803 4.8008 -1.3956 20 1 5.1308 5.8389 -0.4869 21 1 6.6871 5.4153 -2.2978 22 1 4.5798 4.2190 -2.2052 23 6 4.2168 -0.1231 0.0057 24 8 5.4320 -0.1921 0.0106 25 7 3.4636 -1.2422 0.0004 26 6 4.1171 -2.5533 0.0007 27 6 2.1227 -1.1700 0.0005 28 8 1.4809 -2.2023 0.0005 29 1 -0.3634 -1.0239 -0.0865 30 1 -0.3632 0.4370 0.9302 31 1 -0.3634 0.5871 -0.8434 32 1 0.5798 2.2800 0.5009 33 1 2.1846 2.9697 -1.8739 34 1 0.6207 2.1205 -1.9131 35 1 -1.4392 3.2853 -1.3811 36 1 -2.6153 5.4473 -1.3036 37 1 -1.3298 7.5459 -1.2224 38 1 1.1317 7.4821 -1.2091 39 1 2.3077 5.3197 -1.2772 40 1 8.3054 4.2301 -0.4945 41 1 4.2791 -2.8789 -1.0268 42 1 3.4826 -3.2753 0.5147 43 1 5.0756 -2.4814 0.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000340941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:22 Heat of formation + Delta-G solvation = -45.841269 kcal Electronic energy + Delta-G solvation = -30861.168445 eV Core-core repulsion = 26679.123701 eV Total energy + Delta-G solvation = -4182.044744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.38335 -40.62208 -40.17281 -39.58405 -38.36398 -36.31412 -36.03258 -34.91915 -32.82996 -31.90564 -31.70863 -29.47713 -28.43803 -27.84729 -26.65382 -24.84434 -23.69081 -23.40662 -22.19708 -21.85962 -20.70690 -18.93328 -18.69942 -18.31983 -18.04325 -17.69854 -17.09728 -16.96553 -16.60126 -16.32825 -16.22844 -15.82914 -15.71582 -15.31466 -15.09407 -14.87126 -14.39067 -14.34462 -14.19093 -14.02098 -13.89952 -13.84712 -13.56061 -13.42936 -13.34712 -13.28494 -12.92090 -12.53424 -12.22545 -12.16355 -11.88829 -11.84516 -11.70446 -11.15394 -10.92603 -10.83122 -10.26639 -9.75330 -9.70561 -9.49773 -9.19448 -8.74642 -6.90228 -0.35356 0.44739 0.58052 0.80123 0.85058 1.35366 1.36909 1.56417 1.82272 1.93911 2.34018 2.43126 2.58309 3.04278 3.39438 3.53079 3.69049 3.83486 4.03278 4.07685 4.21603 4.26855 4.30242 4.33179 4.37076 4.40316 4.43132 4.51435 4.59307 4.68241 4.70462 4.74420 4.81800 4.83212 5.14829 5.16095 5.24187 5.49553 5.59427 5.62332 5.69427 5.83075 5.93411 6.14384 6.18777 6.27341 6.43909 6.58338 6.81109 6.95145 7.98490 8.29278 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.005976 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.456349 B = 4684.031154 C = 7795.877111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.546 5.546 3 C 0.427 3.573 4 N -0.595 5.595 5 C 0.120 3.880 6 C -0.096 4.096 7 C -0.105 4.105 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.141 4.141 11 C -0.109 4.109 12 C -0.317 4.317 13 C 0.424 3.576 14 O -0.560 6.560 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.057 3.943 18 N -0.845 5.845 19 Si 1.013 2.987 20 H -0.279 1.279 21 H -0.306 1.306 22 H -0.268 1.268 23 C 0.549 3.451 24 O -0.516 6.516 25 N -0.560 5.560 26 C 0.079 3.921 27 C 0.700 3.300 28 O -0.559 6.559 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.375 0.625 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.290 0.710 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 -2.090 -3.318 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.270 5.270 3 C 0.221 3.779 4 N -0.227 5.227 5 C -0.004 4.004 6 C -0.096 4.096 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.134 4.134 10 C -0.159 4.159 11 C -0.128 4.128 12 C -0.330 4.330 13 C 0.324 3.676 14 O -0.457 6.457 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.159 4.159 18 N -0.476 5.476 19 Si 0.842 3.158 20 H -0.205 1.205 21 H -0.237 1.237 22 H -0.194 1.194 23 C 0.344 3.656 24 O -0.390 6.390 25 N -0.304 5.304 26 C -0.062 4.062 27 C 0.402 3.598 28 O -0.435 6.435 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.202 0.798 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.499 -1.890 -3.252 22.811 hybrid contribution 0.602 -0.141 -0.201 0.650 sum -21.896 -2.030 -3.453 22.260 Atomic orbital electron populations 1.22579 0.72809 1.07944 1.05718 1.45795 1.11019 1.03710 1.66503 1.19541 0.90428 0.81515 0.86392 1.56519 1.27190 1.20980 1.17988 1.20906 1.00285 0.94063 0.85113 1.19566 0.94298 0.93170 1.02567 1.21343 0.92082 0.99899 0.98963 1.21477 1.01267 0.91744 0.99612 1.21492 0.93198 0.99983 0.98744 1.21351 0.95898 0.97393 1.01253 1.21235 0.99713 0.93620 0.98245 1.22471 0.90637 0.95369 1.24537 1.17185 0.88124 0.85584 0.76663 1.90190 1.71924 1.30541 1.53049 1.21179 0.93570 1.05328 1.35848 0.90629 1.26779 0.94831 0.99207 0.95038 1.69613 1.08086 1.31698 1.38253 0.84568 0.75978 0.77554 0.77659 1.20491 1.23651 1.19384 1.18534 0.87150 0.83951 0.75954 1.90861 1.13870 1.86133 1.48128 1.46430 1.06100 1.10905 1.66994 1.22017 0.98991 0.80512 1.04637 1.15592 0.81645 0.84221 0.78293 1.90929 1.65063 1.31500 1.56010 0.86786 0.87570 0.87639 0.79756 0.91949 0.89923 0.82724 0.82757 0.83776 0.85994 0.88896 0.89944 0.89904 0.87605 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 9.36 127.77 1.20 1.85 16 2 N -0.55 -13.97 2.99 -676.95 -2.03 -15.99 16 3 C 0.43 13.81 6.03 133.09 0.80 14.61 16 4 N -0.59 -16.90 4.62 -345.75 -1.60 -18.50 16 5 C 0.12 3.21 4.91 85.56 0.42 3.63 16 6 C -0.10 -2.41 5.41 -19.86 -0.11 -2.52 16 7 C -0.10 -1.74 9.70 22.27 0.22 -1.53 16 8 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 9 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 10 C -0.14 -3.59 10.05 22.27 0.22 -3.37 16 11 C -0.11 -3.43 9.70 22.27 0.22 -3.22 16 12 C -0.32 -14.10 6.10 -18.29 -0.11 -14.21 16 13 C 0.42 22.81 6.32 25.32 0.16 22.97 16 14 O -0.56 -29.47 9.84 -5.34 -0.05 -29.52 16 15 C -0.53 -32.34 8.74 23.64 0.21 -32.14 16 16 H 0.08 5.08 5.89 -2.91 -0.02 5.06 16 17 C 0.06 3.39 5.52 85.37 0.47 3.86 16 18 N -0.84 -51.04 13.91 21.87 0.30 -50.73 16 19 Si 1.01 51.76 25.86 68.60 1.77 53.53 16 20 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.27 -13.66 6.87 99.48 0.68 -12.98 16 23 C 0.55 24.29 7.59 86.47 0.66 24.94 16 24 O -0.52 -27.07 13.38 -4.41 -0.06 -27.13 16 25 N -0.56 -19.50 2.95 -801.38 -2.37 -21.87 16 26 C 0.08 2.21 10.10 127.77 1.29 3.50 16 27 C 0.70 21.37 8.09 179.38 1.45 22.82 16 28 O -0.56 -17.01 14.87 -3.88 -0.06 -17.07 16 29 H 0.11 1.59 6.78 -2.39 -0.02 1.57 16 30 H 0.11 0.91 7.71 -2.38 -0.02 0.90 16 31 H 0.11 0.85 6.95 -2.39 -0.02 0.84 16 32 H 0.38 7.33 7.12 -89.70 -0.64 6.69 16 33 H 0.06 2.27 7.20 -2.39 -0.02 2.25 16 34 H 0.08 1.53 7.05 -2.39 -0.02 1.52 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.09 3.71 7.52 -2.91 -0.02 3.68 16 40 H 0.29 15.84 8.29 -92.71 -0.77 15.08 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.52 7.33 -2.39 -0.02 2.50 16 43 H 0.08 2.53 7.41 -2.39 -0.02 2.51 16 Total: -1.00 -82.12 356.84 3.88 -78.24 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.42 Total: 11.43 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 7.54 Total: 37.61 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.69 Total: -107.09 kcal Atomic # 8 Polarization: -73.55 SS G_CDS: -0.17 Total: -73.72 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.77 Total: 53.53 kcal Total: -82.12 3.88 -78.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000340941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.398 kcal (2) G-P(sol) polarization free energy of solvation -82.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds