Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46970 * 2 1 4 4 C 1.34224 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00164 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47229 * 179.97438 * 6 4 3 8 8 C 1.34519 * 124.62321 * 265.02465 * 7 6 4 9 9 C 1.39125 * 109.43293 * 179.97438 * 8 7 6 10 10 C 1.41518 * 126.95924 * 179.97438 * 9 8 7 11 11 N 1.31258 * 120.00043 * 179.97438 * 10 9 8 12 12 N 1.40099 * 119.99944 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99700 * 180.02562 * 12 11 10 14 14 O 1.22106 * 120.00051 * 359.97438 * 13 12 11 15 15 C 1.39721 * 119.99774 * 180.02562 * 13 12 11 16 16 H 1.08005 * 120.00113 * 359.97438 * 15 13 12 17 17 C 1.40048 * 120.00155 * 179.97438 * 15 13 12 18 18 N 1.30705 * 119.99347 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00430 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46855 * 89.99764 * 19 17 15 21 21 H 1.48490 * 109.47288 * 210.00177 * 19 17 15 22 22 H 1.48510 * 109.46878 * 330.00299 * 19 17 15 23 23 C 1.47443 * 106.07912 * 0.02562 * 9 8 7 24 24 C 1.39308 * 133.91351 * 179.97438 * 23 9 8 25 25 C 1.37919 * 119.66272 * 180.02562 * 24 23 9 26 26 C 1.38630 * 120.24646 * 0.02562 * 25 24 23 27 27 C 1.38027 * 120.64573 * 359.97438 * 26 25 24 28 28 C 1.38256 * 124.61549 * 84.99009 * 7 6 4 29 29 H 1.09002 * 109.47759 * 300.00699 * 1 2 3 30 30 H 1.09004 * 109.47313 * 60.00198 * 1 2 3 31 31 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47424 * 239.99766 * 2 1 3 33 33 H 1.08997 * 109.46926 * 119.99241 * 2 1 3 34 34 H 1.08998 * 109.46686 * 60.00255 * 6 4 3 35 35 H 1.08998 * 109.47383 * 300.00424 * 6 4 3 36 36 H 1.08003 * 125.28171 * 0.23284 * 8 7 6 37 37 H 1.08005 * 120.00089 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00143 * 0.02562 * 12 11 10 39 39 H 0.97006 * 119.99542 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.16502 * 359.97438 * 24 23 9 41 41 H 1.07997 * 119.87690 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.67498 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.01068 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.1509 2.9175 1.1048 9 6 7.4904 2.8148 0.7429 10 6 8.6095 2.8325 1.6090 11 7 9.8217 2.7245 1.1173 12 7 10.9295 2.7415 1.9747 13 6 12.1742 2.6311 1.4697 14 8 12.3363 2.5158 0.2649 15 6 13.2791 2.6475 2.3248 16 1 13.1357 2.7491 3.3905 17 6 14.5724 2.5323 1.8002 18 7 14.7458 2.4089 0.5106 19 14 16.0496 2.5549 2.9433 20 1 16.3669 1.1682 3.3695 21 1 17.2174 3.1335 2.2317 22 1 15.7386 3.3809 4.1376 23 6 7.5079 2.6851 -0.7257 24 6 8.5214 2.5488 -1.6716 25 6 8.1983 2.4491 -3.0087 26 6 6.8722 2.4845 -3.4111 27 6 5.8588 2.6191 -2.4837 28 6 6.1638 2.7196 -1.1313 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5843 3.4701 0.8895 35 1 3.5851 3.4691 -0.8904 36 1 5.7839 3.0220 2.1151 37 1 8.4661 2.9349 2.6746 38 1 10.8007 2.8327 2.9317 39 1 15.6417 2.3294 0.1471 40 1 9.5550 2.5224 -1.3595 41 1 8.9812 2.3429 -3.7449 42 1 6.6296 2.4052 -4.4605 43 1 4.8292 2.6459 -2.8086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000510278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -11.773899 kcal Electronic energy + Delta-G solvation = -28242.370307 eV Core-core repulsion = 24061.802835 eV Total energy + Delta-G solvation = -4180.567472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52184 -40.47578 -37.49311 -37.24549 -36.62219 -35.29843 -33.26469 -32.48749 -32.14741 -30.56652 -30.11045 -28.80602 -27.63377 -26.23650 -23.88842 -22.87085 -22.52787 -21.78429 -20.79151 -19.78704 -19.13985 -18.31033 -17.59836 -17.15868 -16.99479 -16.50183 -16.23845 -15.64086 -15.47334 -15.04755 -14.78601 -14.46279 -14.14837 -13.80777 -13.64535 -13.49256 -13.24559 -12.99851 -12.94442 -12.75084 -12.63342 -12.32199 -12.24315 -12.06924 -11.51768 -11.38896 -11.37116 -11.28724 -10.98283 -10.97511 -10.69960 -10.65870 -10.56056 -10.32144 -9.36275 -9.24641 -8.90322 -8.03201 -7.94479 -7.65966 -6.67563 -6.32974 -4.89043 1.20280 1.70585 1.76122 1.98976 2.30896 2.75561 3.08060 3.14436 3.18384 3.63629 3.88253 4.18376 4.18909 4.30699 4.32219 4.47644 4.51653 4.52126 4.62158 4.67598 4.81699 4.91855 5.13885 5.20528 5.29940 5.39619 5.48799 5.51891 5.61025 5.83120 5.87381 5.94503 5.96163 5.99109 6.38099 6.51451 6.61973 6.81452 6.86475 7.10051 7.15602 7.20586 7.26286 7.38081 7.44360 7.96030 8.07056 8.81791 8.86969 9.42811 10.45416 10.76070 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.002117 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.623337 B =13225.674704 C =14106.928832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.435 3.565 5 O -0.480 6.480 6 C 0.123 3.877 7 N -0.461 5.461 8 C 0.059 3.941 9 C -0.099 4.099 10 C 0.051 3.949 11 N -0.193 5.193 12 N -0.592 5.592 13 C 0.560 3.440 14 O -0.556 6.556 15 C -0.536 4.536 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.743 5.743 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.071 4.071 24 C -0.048 4.048 25 C -0.150 4.150 26 C -0.099 4.099 27 C -0.140 4.140 28 C 0.093 3.907 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.174 0.826 37 H 0.103 0.897 38 H 0.366 0.634 39 H 0.273 0.727 40 H 0.146 0.854 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.754 0.632 -0.283 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.275 3.725 5 O -0.364 6.364 6 C -0.001 4.001 7 N -0.145 5.145 8 C -0.072 4.072 9 C -0.108 4.108 10 C -0.157 4.157 11 N -0.003 5.003 12 N -0.338 5.338 13 C 0.368 3.632 14 O -0.436 6.436 15 C -0.573 4.573 16 H 0.087 0.913 17 C -0.136 4.136 18 N -0.370 5.370 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.076 4.076 24 C -0.066 4.066 25 C -0.169 4.169 26 C -0.118 4.118 27 C -0.161 4.161 28 C -0.010 4.010 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.191 0.809 37 H 0.120 0.880 38 H 0.201 0.799 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.837 0.108 -2.045 26.915 hybrid contribution 0.135 -0.151 2.042 2.052 sum -26.701 -0.043 -0.003 26.701 Atomic orbital electron populations 1.21814 0.92371 1.03161 1.03565 1.23069 0.95413 0.79784 1.02904 1.86470 1.24032 1.32946 1.84247 1.24233 0.81111 0.93326 0.73857 1.90793 1.60210 1.42436 1.42975 1.21092 0.79444 0.91503 1.08072 1.42650 1.03350 1.62808 1.05671 1.22116 0.89379 1.05079 0.90647 1.17907 0.90575 1.11281 0.91046 1.22023 0.90252 1.07199 0.96199 1.75139 0.95085 1.05992 1.24105 1.48013 1.03865 1.75658 1.06228 1.16472 0.78902 0.78464 0.89327 1.90749 1.83444 1.53764 1.15680 1.19532 0.90450 1.52653 0.94684 0.91263 1.25745 1.00098 0.92524 0.95197 1.70077 1.23193 1.31417 1.12300 0.86236 0.80079 0.79171 0.80534 1.19482 1.20172 1.18698 1.18975 0.91483 1.04369 0.92776 1.21080 1.00147 0.94039 0.91355 1.21008 0.96053 1.03977 0.95913 1.20769 0.92486 1.00202 0.98374 1.19851 0.98915 1.07969 0.89328 1.18208 0.89986 1.05041 0.87752 0.91400 0.91392 0.90086 0.91062 0.91062 0.84815 0.85355 0.80909 0.87990 0.79884 0.91589 0.83635 0.85919 0.86173 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.29 37.16 0.38 -0.27 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.36 -2.95 10.22 -39.24 -0.40 -3.35 16 4 C 0.44 4.30 8.03 36.01 0.29 4.59 16 5 O -0.48 -6.89 16.17 -18.75 -0.30 -7.19 16 6 C 0.12 0.91 6.51 -5.19 -0.03 0.88 16 7 N -0.46 -5.56 2.21 -114.89 -0.25 -5.81 16 8 C 0.06 0.74 11.28 -16.05 -0.18 0.56 16 9 C -0.10 -1.68 6.15 -104.57 -0.64 -2.33 16 10 C 0.05 0.94 10.78 -16.55 -0.18 0.76 16 11 N -0.19 -4.52 9.68 31.05 0.30 -4.22 16 12 N -0.59 -14.64 6.26 28.73 0.18 -14.46 16 13 C 0.56 16.63 7.62 -15.70 -0.12 16.51 16 14 O -0.56 -18.83 15.17 4.82 0.07 -18.76 16 15 C -0.54 -15.14 9.20 -38.35 -0.35 -15.49 16 16 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 17 C 0.09 2.43 5.49 -17.35 -0.10 2.33 16 18 N -0.74 -22.06 11.69 55.55 0.65 -21.41 16 19 Si 0.92 19.70 29.56 -169.99 -5.02 14.68 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.07 -1.30 6.23 -104.92 -0.65 -1.96 16 24 C -0.05 -0.93 9.77 -39.30 -0.38 -1.31 16 25 C -0.15 -2.45 10.04 -39.55 -0.40 -2.84 16 26 C -0.10 -1.37 10.02 -39.51 -0.40 -1.76 16 27 C -0.14 -1.89 9.95 -39.38 -0.39 -2.29 16 28 C 0.09 1.40 6.77 -83.86 -0.57 0.84 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.13 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.10 1.53 8.04 -52.48 -0.42 1.11 16 38 H 0.37 7.64 8.62 -182.60 -1.57 6.06 16 39 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 40 H 0.15 3.33 7.15 -52.49 -0.38 2.96 16 41 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -40.10 385.71 -9.03 -49.13 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.56 Total: 6.70 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.49 Total: -1.11 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.88 Total: -45.91 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.63 Total: -29.30 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.10 -9.03 -49.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000510278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.352 kcal (2) G-P(sol) polarization free energy of solvation -40.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds