Wall clock time and date at job start Tue Mar 31 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46970 * 2 1 4 4 C 1.34224 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00164 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47229 * 179.97438 * 6 4 3 8 8 C 1.34519 * 124.62321 * 265.02465 * 7 6 4 9 9 C 1.39125 * 109.43293 * 179.97438 * 8 7 6 10 10 C 1.41518 * 126.95924 * 179.97438 * 9 8 7 11 11 N 1.31258 * 120.00043 * 179.97438 * 10 9 8 12 12 N 1.40099 * 119.99944 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99700 * 180.02562 * 12 11 10 14 14 O 1.22106 * 120.00051 * 359.97438 * 13 12 11 15 15 C 1.39721 * 119.99774 * 180.02562 * 13 12 11 16 16 H 1.08005 * 120.00113 * 359.97438 * 15 13 12 17 17 C 1.40048 * 120.00155 * 179.97438 * 15 13 12 18 18 N 1.30705 * 119.99347 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00430 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46855 * 89.99764 * 19 17 15 21 21 H 1.48490 * 109.47288 * 210.00177 * 19 17 15 22 22 H 1.48510 * 109.46878 * 330.00299 * 19 17 15 23 23 C 1.47443 * 106.07912 * 0.02562 * 9 8 7 24 24 C 1.39308 * 133.91351 * 179.97438 * 23 9 8 25 25 C 1.37919 * 119.66272 * 180.02562 * 24 23 9 26 26 C 1.38630 * 120.24646 * 0.02562 * 25 24 23 27 27 C 1.38027 * 120.64573 * 359.97438 * 26 25 24 28 28 C 1.38256 * 124.61549 * 84.99009 * 7 6 4 29 29 H 1.09002 * 109.47759 * 300.00699 * 1 2 3 30 30 H 1.09004 * 109.47313 * 60.00198 * 1 2 3 31 31 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47424 * 239.99766 * 2 1 3 33 33 H 1.08997 * 109.46926 * 119.99241 * 2 1 3 34 34 H 1.08998 * 109.46686 * 60.00255 * 6 4 3 35 35 H 1.08998 * 109.47383 * 300.00424 * 6 4 3 36 36 H 1.08003 * 125.28171 * 0.23284 * 8 7 6 37 37 H 1.08005 * 120.00089 * 359.97438 * 10 9 8 38 38 H 0.96994 * 120.00143 * 0.02562 * 12 11 10 39 39 H 0.97006 * 119.99542 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.16502 * 359.97438 * 24 23 9 41 41 H 1.07997 * 119.87690 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.67498 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.01068 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 7 5.3837 2.8608 0.0014 8 6 6.1509 2.9175 1.1048 9 6 7.4904 2.8148 0.7429 10 6 8.6095 2.8325 1.6090 11 7 9.8217 2.7245 1.1173 12 7 10.9295 2.7415 1.9747 13 6 12.1742 2.6311 1.4697 14 8 12.3363 2.5158 0.2649 15 6 13.2791 2.6475 2.3248 16 1 13.1357 2.7491 3.3905 17 6 14.5724 2.5323 1.8002 18 7 14.7458 2.4089 0.5106 19 14 16.0496 2.5549 2.9433 20 1 16.3669 1.1682 3.3695 21 1 17.2174 3.1335 2.2317 22 1 15.7386 3.3809 4.1376 23 6 7.5079 2.6851 -0.7257 24 6 8.5214 2.5488 -1.6716 25 6 8.1983 2.4491 -3.0087 26 6 6.8722 2.4845 -3.4111 27 6 5.8588 2.6191 -2.4837 28 6 6.1638 2.7196 -1.1313 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5843 3.4701 0.8895 35 1 3.5851 3.4691 -0.8904 36 1 5.7839 3.0220 2.1151 37 1 8.4661 2.9349 2.6746 38 1 10.8007 2.8327 2.9317 39 1 15.6417 2.3294 0.1471 40 1 9.5550 2.5224 -1.3595 41 1 8.9812 2.3429 -3.7449 42 1 6.6296 2.4052 -4.4605 43 1 4.8292 2.6459 -2.8086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000510278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:18 Heat of formation + Delta-G solvation = -40.168398 kcal Electronic energy + Delta-G solvation = -28243.601585 eV Core-core repulsion = 24061.802835 eV Total energy + Delta-G solvation = -4181.798750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.54997 -41.32155 -39.49185 -38.19313 -37.61579 -36.98335 -34.81002 -34.29037 -32.81377 -31.98224 -31.35096 -30.01349 -29.13617 -27.85799 -24.67508 -24.13975 -23.59144 -22.75311 -22.14243 -21.34411 -20.54332 -19.30952 -19.02756 -18.06824 -18.04333 -17.71174 -17.59293 -17.11333 -16.88413 -16.26431 -15.89317 -15.47854 -15.42903 -15.02769 -14.99821 -14.74789 -14.66927 -14.26118 -14.17963 -13.63791 -13.51740 -13.33451 -13.22650 -13.14379 -12.87694 -12.71250 -12.69101 -12.60280 -12.52493 -12.48797 -12.02057 -11.89866 -11.64679 -11.56389 -11.01351 -10.70461 -10.67970 -9.92295 -9.53808 -9.20557 -8.40048 -8.14583 -7.07262 0.01268 0.55620 0.82178 1.04308 1.32695 1.37954 1.41535 1.57315 1.89390 2.15968 2.26807 2.49471 2.53228 3.03224 3.53636 3.68826 3.71219 3.75498 3.80465 3.99362 4.06664 4.07081 4.18551 4.24631 4.32854 4.34491 4.39537 4.62895 4.73826 4.78284 4.82469 4.93484 5.04484 5.14239 5.17583 5.25660 5.29610 5.40977 5.54140 5.62025 5.78773 5.83980 5.86971 6.10458 6.19722 6.24178 6.62727 6.68879 7.11254 7.58612 8.45080 8.66813 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.002117 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.623337 B =13225.674704 C =14106.928832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.351 6.351 4 C 0.442 3.558 5 O -0.533 6.533 6 C 0.118 3.882 7 N -0.452 5.452 8 C 0.134 3.866 9 C -0.186 4.186 10 C 0.104 3.896 11 N -0.283 5.283 12 N -0.600 5.600 13 C 0.545 3.455 14 O -0.621 6.621 15 C -0.563 4.563 16 H 0.094 0.906 17 C 0.027 3.973 18 N -0.801 5.801 19 Si 1.012 2.988 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.244 1.244 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.153 4.153 26 C -0.104 4.104 27 C -0.121 4.121 28 C 0.080 3.920 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.233 0.767 37 H 0.140 0.860 38 H 0.379 0.621 39 H 0.280 0.720 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.158 0.842 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.644 1.627 1.718 32.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.267 6.267 4 C 0.284 3.716 5 O -0.422 6.422 6 C -0.003 4.003 7 N -0.133 5.133 8 C -0.001 4.001 9 C -0.195 4.195 10 C -0.103 4.103 11 N -0.091 5.091 12 N -0.345 5.345 13 C 0.354 3.646 14 O -0.507 6.507 15 C -0.599 4.599 16 H 0.112 0.888 17 C -0.191 4.191 18 N -0.429 5.429 19 Si 0.829 3.171 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.167 1.167 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.172 4.172 26 C -0.123 4.123 27 C -0.141 4.141 28 C -0.023 4.023 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.249 0.751 37 H 0.157 0.843 38 H 0.217 0.783 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.141 0.859 42 H 0.176 0.824 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -31.842 1.121 -0.028 31.862 hybrid contribution 1.030 -0.464 1.376 1.781 sum -30.813 0.657 1.348 30.849 Atomic orbital electron populations 1.21819 0.90118 1.04258 1.04060 1.23255 0.97142 0.79184 1.02262 1.86480 1.23102 1.33525 1.83583 1.24632 0.81208 0.93592 0.72180 1.90809 1.61334 1.44298 1.45717 1.21735 0.75684 0.90527 1.12388 1.43017 1.05591 1.60283 1.04437 1.22985 0.87521 0.96873 0.92746 1.18166 0.92278 1.18297 0.90781 1.22711 0.89379 0.99853 0.98338 1.75333 0.96115 1.13194 1.24469 1.47215 1.03606 1.76918 1.06772 1.16909 0.80905 0.77954 0.88808 1.90681 1.85087 1.56845 1.18091 1.20096 0.91054 1.53003 0.95758 0.88818 1.27189 1.03959 0.90868 0.97093 1.70266 1.24565 1.32672 1.15393 0.84828 0.74478 0.79878 0.77886 1.18289 1.19328 1.16704 1.19251 0.92855 1.04326 0.93694 1.20809 0.98273 0.99078 0.93624 1.21176 0.98058 1.03320 0.94657 1.21123 0.90957 0.99726 1.00531 1.20347 1.00762 1.04617 0.88420 1.18344 0.89125 1.05480 0.89347 0.90788 0.90934 0.88765 0.91936 0.91654 0.79608 0.81960 0.75117 0.84258 0.78328 0.90974 0.89296 0.85873 0.82440 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 71.98 0.74 -0.03 16 2 C 0.06 0.62 6.19 71.98 0.45 1.07 16 3 O -0.35 -4.22 10.22 -51.36 -0.52 -4.75 16 4 C 0.44 6.67 8.03 71.24 0.57 7.24 16 5 O -0.53 -13.79 16.17 21.96 0.36 -13.44 16 6 C 0.12 0.95 6.51 85.63 0.56 1.51 16 7 N -0.45 -8.75 2.21 -517.39 -1.14 -9.90 16 8 C 0.13 2.75 11.28 84.49 0.95 3.70 16 9 C -0.19 -6.25 6.15 -19.83 -0.12 -6.37 16 10 C 0.10 3.96 10.78 85.59 0.92 4.88 16 11 N -0.28 -14.51 9.68 -55.69 -0.54 -15.05 16 12 N -0.60 -32.14 6.26 -181.05 -1.13 -33.28 16 13 C 0.54 35.20 7.62 84.60 0.64 35.85 16 14 O -0.62 -46.51 15.17 -5.66 -0.09 -46.60 16 15 C -0.56 -33.49 9.20 23.07 0.21 -33.28 16 16 H 0.09 4.87 7.85 -2.91 -0.02 4.85 16 17 C 0.03 1.56 5.49 85.30 0.47 2.03 16 18 N -0.80 -50.85 11.69 21.84 0.26 -50.60 16 19 Si 1.01 41.38 29.56 68.60 2.03 43.41 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 23 C -0.10 -3.67 6.23 -20.06 -0.12 -3.80 16 24 C -0.10 -4.31 9.77 22.45 0.22 -4.09 16 25 C -0.15 -5.39 10.04 22.29 0.22 -5.17 16 26 C -0.10 -2.76 10.02 22.31 0.22 -2.54 16 27 C -0.12 -2.92 9.95 22.40 0.22 -2.69 16 28 C 0.08 2.25 6.77 38.85 0.26 2.51 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 34 H 0.19 -0.26 8.10 -2.39 -0.02 -0.28 16 35 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.23 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.14 3.97 8.04 -2.91 -0.02 3.95 16 38 H 0.38 16.83 8.62 -213.33 -1.84 14.99 16 39 H 0.28 15.87 8.29 -92.70 -0.77 15.10 16 40 H 0.09 4.83 7.15 -2.91 -0.02 4.81 16 41 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -104.25 385.71 4.85 -99.40 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.78 Total: 29.97 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.42 Total: 0.83 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -2.56 Total: -108.82 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.26 Total: -64.79 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -104.25 4.85 -99.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000510278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.236 kcal (2) G-P(sol) polarization free energy of solvation -104.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds