Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47199 * 274.99539 * 3 2 1 5 5 H 1.48494 * 109.47303 * 34.99762 * 3 2 1 6 6 H 1.48502 * 109.47196 * 154.99645 * 3 2 1 7 7 C 1.40212 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00327 * 185.24230 * 7 2 1 9 9 C 1.40751 * 120.00167 * 5.24425 * 7 2 1 10 10 O 1.21975 * 119.99322 * 5.24326 * 9 7 2 11 11 N 1.34774 * 120.00342 * 185.24649 * 9 7 2 12 12 N 1.40097 * 120.00013 * 185.17021 * 11 9 7 13 13 C 1.30688 * 120.00191 * 185.57614 * 12 11 9 14 14 C 1.46724 * 120.00172 * 175.57458 * 13 12 11 15 15 C 1.40132 * 120.22881 * 185.80730 * 14 13 12 16 16 C 1.37651 * 119.86198 * 180.02562 * 15 14 13 17 17 C 1.38718 * 120.34901 * 0.02562 * 16 15 14 18 18 C 1.38170 * 120.47343 * 359.71605 * 17 16 15 19 19 C 1.38546 * 120.12221 * 0.56148 * 18 17 16 20 20 O 1.35682 * 120.17463 * 179.72326 * 19 18 17 21 21 C 1.42900 * 116.99461 * 356.64907 * 20 19 18 22 22 C 1.50704 * 109.46769 * 186.92547 * 21 20 19 23 23 C 1.38222 * 120.01362 * 6.35659 * 22 21 20 24 24 C 1.38217 * 120.02604 * 179.97438 * 23 22 21 25 25 C 1.38267 * 120.05061 * 0.03524 * 24 23 22 26 26 C 1.38170 * 120.02622 * 359.97438 * 25 24 23 27 27 C 1.38434 * 120.00961 * 186.08739 * 22 21 20 28 28 F 1.35093 * 120.03175 * 0.02562 * 27 22 21 29 29 H 0.97006 * 119.99775 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99746 * 5.17002 * 11 9 7 31 31 H 1.08000 * 119.99741 * 355.57618 * 13 12 11 32 32 H 1.07999 * 120.07216 * 359.97438 * 15 14 13 33 33 H 1.08003 * 119.82824 * 179.97438 * 16 15 14 34 34 H 1.08004 * 119.75950 * 180.02562 * 17 16 15 35 35 H 1.08001 * 119.93706 * 180.28489 * 18 17 16 36 36 H 1.08999 * 109.47217 * 306.92046 * 21 20 19 37 37 H 1.08998 * 109.47136 * 66.92740 * 21 20 19 38 38 H 1.08004 * 119.98483 * 359.96674 * 23 22 21 39 39 H 1.07999 * 119.97306 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.98662 * 179.97438 * 25 24 23 41 41 H 1.08010 * 120.01279 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.3819 2.1074 -1.3947 5 1 1.4943 2.6199 0.8030 6 1 3.5863 1.4120 0.5918 7 6 2.0070 -1.2143 0.0005 8 1 3.0836 -1.2162 0.0860 9 6 1.3077 -2.4307 -0.1103 10 8 0.1032 -2.4263 -0.3028 11 7 1.9689 -3.6003 -0.0038 12 7 1.2942 -4.8087 -0.2214 13 6 1.9050 -5.9450 -0.0122 14 6 1.1707 -7.2081 -0.1461 15 6 1.7850 -8.4208 0.1941 16 6 1.0892 -9.6015 0.0650 17 6 -0.2174 -9.5977 -0.4007 18 6 -0.8387 -8.4098 -0.7352 19 6 -0.1548 -7.2105 -0.6184 20 8 -0.7620 -6.0439 -0.9518 21 6 -2.0842 -6.1306 -1.4867 22 6 -2.5278 -4.7679 -1.9530 23 6 -1.6374 -3.7107 -1.9449 24 6 -2.0437 -2.4609 -2.3729 25 6 -3.3413 -2.2664 -2.8091 26 6 -4.2332 -3.3217 -2.8179 27 6 -3.8255 -4.5757 -2.3949 28 9 -4.6953 -5.6094 -2.4079 29 1 -0.4850 0.8401 -0.0004 30 1 2.9118 -3.6054 0.2236 31 1 2.9503 -5.9542 0.2592 32 1 2.8025 -8.4292 0.5559 33 1 1.5634 -10.5359 0.3270 34 1 -0.7546 -10.5297 -0.4979 35 1 -1.8578 -8.4165 -1.0925 36 1 -2.0909 -6.8226 -2.3288 37 1 -2.7653 -6.4902 -0.7154 38 1 -0.6237 -3.8613 -1.6037 39 1 -1.3472 -1.6355 -2.3666 40 1 -3.6578 -1.2893 -3.1430 41 1 -5.2469 -3.1694 -3.1583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -34.272143 kcal Electronic energy + Delta-G solvation = -29276.890678 eV Core-core repulsion = 25037.313215 eV Total energy + Delta-G solvation = -4239.577463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.117 amu Computer time = 5.10 seconds Orbital eigenvalues (eV) -49.93698 -41.17421 -39.79104 -39.36840 -38.19063 -36.74144 -34.60972 -33.50817 -33.00274 -31.30959 -31.21209 -30.30518 -28.35594 -27.58167 -24.77367 -23.89977 -23.24198 -22.29025 -21.98146 -21.21534 -19.50139 -18.80706 -18.54307 -17.80580 -17.50677 -17.19678 -16.96738 -16.88941 -16.53208 -16.36170 -15.90925 -15.79549 -15.26593 -15.12352 -14.68821 -14.61594 -14.32681 -14.27315 -14.08885 -14.00851 -13.43515 -13.22554 -13.15355 -12.91169 -12.63169 -12.46803 -12.44145 -12.34436 -12.06638 -12.02615 -11.85958 -11.80661 -10.92271 -10.74845 -10.20069 -9.81563 -9.63866 -9.56320 -9.33993 -8.59647 -8.32253 -6.93814 0.03759 0.19821 0.40327 0.58090 1.38862 1.40885 1.55732 1.66053 2.13087 2.22595 2.46770 2.53299 2.73328 3.01113 3.26363 3.57745 3.74711 3.79466 3.95348 3.99384 4.03415 4.18605 4.21542 4.30536 4.41221 4.42625 4.49681 4.61749 4.69475 4.75262 5.01731 5.07081 5.14038 5.15329 5.26536 5.34705 5.47331 5.55615 5.62349 5.65859 5.80813 5.94976 5.97702 6.11356 6.15656 6.58125 6.80263 7.12478 7.58480 8.50463 8.75139 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.004578 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.315869 B = 6114.240510 C = 9201.118408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.044 3.956 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.544 3.456 10 O -0.574 6.574 11 N -0.603 5.603 12 N -0.226 5.226 13 C 0.048 3.952 14 C -0.097 4.097 15 C -0.056 4.056 16 C -0.158 4.158 17 C -0.069 4.069 18 C -0.225 4.225 19 C 0.124 3.876 20 O -0.294 6.294 21 C 0.107 3.893 22 C -0.152 4.152 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.094 4.094 26 C -0.155 4.155 27 C 0.088 3.912 28 F -0.139 7.139 29 H 0.277 0.723 30 H 0.376 0.624 31 H 0.135 0.865 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -14.686 -3.078 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.176 4.176 3 Si 0.813 3.187 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.602 4.602 8 H 0.099 0.901 9 C 0.352 3.648 10 O -0.456 6.456 11 N -0.348 5.348 12 N -0.034 5.034 13 C -0.162 4.162 14 C -0.100 4.100 15 C -0.076 4.076 16 C -0.176 4.176 17 C -0.088 4.088 18 C -0.244 4.244 19 C 0.075 3.925 20 O -0.206 6.206 21 C 0.032 3.968 22 C -0.153 4.153 23 C -0.083 4.083 24 C -0.136 4.136 25 C -0.112 4.112 26 C -0.174 4.174 27 C 0.069 3.931 28 F -0.118 7.118 29 H 0.088 0.912 30 H 0.212 0.788 31 H 0.152 0.848 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.164 0.836 39 H 0.121 0.879 40 H 0.171 0.829 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.665 -13.769 -3.478 14.450 hybrid contribution 1.437 0.620 0.482 1.637 sum -1.228 -13.149 -2.996 13.542 Atomic orbital electron populations 1.70115 1.09111 1.29134 1.33045 1.26751 0.95442 1.04156 0.91220 0.85069 0.78978 0.75572 0.79105 1.18963 1.19594 1.17622 1.20196 0.95466 0.90598 1.53940 0.90140 1.17061 0.87735 0.81610 0.78423 1.90651 1.15066 1.86097 1.53810 1.47589 1.11481 1.02616 1.73122 1.75163 1.25783 0.92973 1.09476 1.24495 0.98484 0.90525 1.02669 1.18230 0.91348 0.92709 1.07742 1.21402 1.00685 0.89401 0.96123 1.21342 0.94898 0.98726 1.02589 1.21470 0.95173 0.97462 0.94704 1.21423 1.01694 0.92107 1.09173 1.19771 0.92419 0.85477 0.94810 1.86420 1.28970 1.28486 1.76678 1.21347 0.82956 0.94056 0.98404 1.19807 0.93489 0.96745 1.05232 1.21578 1.01992 0.91644 0.93052 1.21259 0.97004 0.97114 0.98209 1.21310 0.92137 0.99778 0.97941 1.21246 1.02082 0.90432 1.03609 1.17367 0.86215 0.85566 1.03987 1.91440 1.68451 1.57269 1.94625 0.91234 0.78752 0.84812 0.82273 0.82153 0.82689 0.84544 0.89291 0.90379 0.83645 0.87927 0.82890 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.75 11.76 21.86 0.26 -44.49 16 2 C 0.04 2.32 5.48 85.36 0.47 2.79 16 3 Si 0.99 39.23 29.56 68.60 2.03 41.26 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.57 -30.96 9.26 23.36 0.22 -30.75 16 8 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 9 C 0.54 31.18 7.64 84.86 0.65 31.82 16 10 O -0.57 -35.92 11.12 -5.23 -0.06 -35.97 16 11 N -0.60 -29.17 6.25 -180.47 -1.13 -30.30 16 12 N -0.23 -10.37 8.13 -52.28 -0.42 -10.79 16 13 C 0.05 1.69 10.75 87.08 0.94 2.62 16 14 C -0.10 -3.01 5.89 -20.00 -0.12 -3.13 16 15 C -0.06 -1.18 9.80 22.59 0.22 -0.95 16 16 C -0.16 -2.69 10.02 22.25 0.22 -2.47 16 17 C -0.07 -1.29 10.04 22.37 0.22 -1.06 16 18 C -0.23 -5.70 9.02 22.33 0.20 -5.50 16 19 C 0.12 4.12 6.71 22.95 0.15 4.28 16 20 O -0.29 -11.84 6.54 -90.00 -0.59 -12.43 16 21 C 0.11 3.72 4.73 71.24 0.34 4.06 16 22 C -0.15 -6.00 5.88 -19.82 -0.12 -6.11 16 23 C -0.06 -3.05 8.26 22.26 0.18 -2.87 16 24 C -0.12 -5.27 9.50 22.27 0.21 -5.06 16 25 C -0.09 -3.26 10.04 22.26 0.22 -3.04 16 26 C -0.16 -4.82 10.03 22.31 0.22 -4.59 16 27 C 0.09 3.01 7.25 22.38 0.16 3.17 16 28 F -0.14 -4.26 16.80 44.97 0.76 -3.51 16 29 H 0.28 14.31 8.29 -92.70 -0.77 13.55 16 30 H 0.38 15.49 8.63 -213.32 -1.84 13.65 16 31 H 0.13 3.73 8.04 -2.91 -0.02 3.71 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 3.05 6.31 -2.91 -0.02 3.03 16 36 H 0.09 2.61 7.40 -2.39 -0.02 2.59 16 37 H 0.08 2.48 7.90 -2.39 -0.02 2.46 16 38 H 0.15 7.88 4.09 -2.91 -0.01 7.87 16 39 H 0.10 5.24 7.88 -2.91 -0.02 5.22 16 40 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -75.51 358.46 4.50 -71.01 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.74 Total: 42.01 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.40 Total: -16.79 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.30 Total: -85.58 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.65 Total: -48.40 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.76 Total: -3.51 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -75.51 4.50 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.740 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.10 seconds