Wall clock time and date at job start Tue Mar 31 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38643 * 119.77822 * 2 1 4 4 C 1.37645 * 120.21813 * 179.97438 * 3 2 1 5 5 C 1.40492 * 119.77958 * 359.97438 * 4 3 2 6 6 C 1.46486 * 120.22079 * 179.97438 * 5 4 3 7 7 C 1.40735 * 125.71250 * 359.71574 * 6 5 4 8 8 C 1.36279 * 107.29843 * 179.89272 * 7 6 5 9 9 C 1.41854 * 106.99235 * 0.36021 * 8 7 6 10 10 C 1.38963 * 125.98078 * 179.74315 * 9 8 7 11 11 N 1.32773 * 119.99698 * 180.02562 * 10 9 8 12 12 N 1.28999 * 119.99817 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99776 * 180.02562 * 12 11 10 14 14 O 1.22132 * 120.00112 * 359.97438 * 13 12 11 15 15 C 1.39434 * 119.99696 * 179.97438 * 13 12 11 16 16 H 1.08004 * 120.00143 * 359.97438 * 15 13 12 17 17 C 1.40306 * 119.99655 * 179.97438 * 15 13 12 18 18 N 1.30551 * 120.00278 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99872 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47372 * 60.00076 * 19 17 15 21 21 H 1.48496 * 109.47324 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47320 * 300.00101 * 19 17 15 23 23 O 1.34497 * 125.71015 * 180.02562 * 6 5 4 24 24 C 1.40458 * 119.56183 * 359.97438 * 5 4 3 25 25 C 1.37694 * 119.77103 * 359.76741 * 24 5 4 26 26 N 1.48020 * 119.88872 * 180.22663 * 25 24 5 27 27 O 1.31697 * 120.00074 * 6.67377 * 26 25 24 28 28 O 1.31705 * 119.99897 * 186.66934 * 26 25 24 29 29 H 1.08996 * 109.47107 * 97.19398 * 1 2 3 30 30 H 1.08997 * 109.46939 * 337.19279 * 1 2 3 31 31 H 1.09000 * 109.47104 * 217.19086 * 1 2 3 32 32 H 1.07990 * 119.88694 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.10984 * 179.97438 * 4 3 2 34 34 H 1.08006 * 126.34499 * 0.04050 * 7 6 5 35 35 H 1.07999 * 126.50711 * 180.13485 * 8 7 6 36 36 H 1.07997 * 120.00355 * 0.02562 * 10 9 8 37 37 H 0.97007 * 119.99662 * 359.97438 * 12 11 10 38 38 H 0.97001 * 120.00065 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.11572 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2034 0.0000 4 6 3.5720 1.2139 0.0005 5 6 4.2791 -0.0001 0.0016 6 6 5.7440 -0.0001 0.0016 7 6 6.5655 1.1426 -0.0051 8 6 7.8585 0.7121 -0.0001 9 6 7.8233 -0.7060 0.0012 10 6 8.9272 -1.5501 0.0008 11 7 8.7560 -2.8668 0.0016 12 7 9.7808 -3.6503 0.0018 13 6 9.6070 -4.9869 0.0021 14 8 8.4795 -5.4561 0.0027 15 6 10.7147 -5.8338 0.0018 16 1 11.7118 -5.4188 0.0009 17 6 10.5338 -7.2252 0.0026 18 7 9.3285 -7.7268 0.0032 19 14 12.0176 -8.3599 0.0015 20 1 12.8375 -8.1040 1.2129 21 1 11.5604 -9.7727 0.0020 22 1 12.8347 -8.1051 -1.2121 23 8 6.5290 -1.0922 0.0021 24 6 3.5722 -1.2138 0.0027 25 6 2.1953 -1.2030 0.0075 26 7 1.4477 -2.4805 0.0138 27 8 2.0933 -3.6206 0.1472 28 8 0.1369 -2.4771 -0.1141 29 1 -0.3633 -0.1287 -1.0195 30 1 -0.3633 0.9473 0.3983 31 1 -0.3633 -0.8187 0.6212 32 1 1.6502 2.1354 -0.0004 33 1 4.1066 2.1523 0.0001 34 1 6.2328 2.1701 -0.0105 35 1 8.7423 1.3327 -0.0010 36 1 9.9243 -1.1352 -0.0001 37 1 10.6764 -3.2776 0.0010 38 1 9.2035 -8.6887 0.0042 39 1 4.1067 -2.1522 0.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000567437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:01 Heat of formation + Delta-G solvation = 73.393475 kcal Electronic energy + Delta-G solvation = -27567.088320 eV Core-core repulsion = 23254.380888 eV Total energy + Delta-G solvation = -4312.707432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19589 -40.43760 -39.13086 -38.29198 -36.01512 -34.78910 -33.77340 -33.20743 -32.85611 -32.03997 -31.67537 -29.26472 -27.94067 -26.84595 -25.78075 -23.70823 -23.05844 -22.00374 -21.22941 -20.58478 -20.15708 -18.66551 -18.22968 -18.07096 -16.84105 -16.41746 -16.24473 -15.97305 -15.92782 -15.72239 -15.60489 -14.82358 -14.32504 -14.14065 -14.06301 -13.97034 -13.18301 -13.10393 -12.96626 -12.86357 -12.70178 -12.50193 -12.21482 -11.97161 -11.72657 -11.62573 -11.20804 -11.10122 -10.93131 -10.82061 -10.56190 -10.52539 -10.17983 -9.91956 -9.88606 -9.77076 -9.19419 -8.56417 -8.09777 -6.83729 -6.64767 -5.24527 -0.77152 0.17030 0.90173 1.04869 1.31582 2.30844 2.87031 2.93355 2.99102 3.02687 3.16576 3.25651 3.67268 3.98950 3.99977 4.06615 4.21265 4.33088 4.42013 4.62378 4.72307 4.80775 5.04588 5.15040 5.26644 5.27967 5.35427 5.46018 5.55124 5.55813 5.59515 5.64920 5.73741 5.82884 5.95481 6.04017 6.17453 6.35073 6.57649 6.73244 6.96148 7.17378 7.49443 7.66619 8.48283 8.54058 8.96001 10.12730 10.32485 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.002409 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.401866 B =11618.469833 C =13854.897493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 C -0.115 4.115 4 C -0.054 4.054 5 C 0.012 3.988 6 C -0.052 4.052 7 C -0.142 4.142 8 C -0.221 4.221 9 C 0.121 3.879 10 C -0.072 4.072 11 N -0.129 5.129 12 N -0.500 5.500 13 C 0.530 3.470 14 O -0.535 6.535 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.084 3.916 18 N -0.728 5.728 19 Si 0.923 3.077 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.263 1.263 23 O -0.133 6.133 24 C -0.048 4.048 25 C 0.004 3.996 26 N -0.018 5.018 27 O -0.164 6.164 28 O -0.172 6.172 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.369 0.631 38 H 0.281 0.719 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 21.176 -0.017 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.028 4.028 3 C -0.134 4.134 4 C -0.072 4.072 5 C 0.010 3.990 6 C -0.105 4.105 7 C -0.161 4.161 8 C -0.244 4.244 9 C 0.066 3.934 10 C -0.266 4.266 11 N 0.041 4.959 12 N -0.247 5.247 13 C 0.343 3.657 14 O -0.414 6.414 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.354 5.354 19 Si 0.746 3.254 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.188 1.188 23 O -0.024 6.024 24 C -0.067 4.067 25 C -0.083 4.083 26 N 0.459 4.541 27 O -0.357 6.357 28 O -0.363 6.363 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.206 0.794 38 H 0.092 0.908 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.854 19.972 -0.019 21.847 hybrid contribution 1.900 -0.110 -0.021 1.904 sum -6.954 19.862 -0.040 21.044 Atomic orbital electron populations 1.21391 0.88406 1.04497 1.04656 1.20106 0.98190 0.90263 0.94216 1.20962 0.93594 0.96997 1.01819 1.21600 0.93914 0.97453 0.94250 1.17650 0.88355 0.92058 1.00899 1.20694 0.89145 0.84580 1.16116 1.21535 0.92604 0.97749 1.04262 1.21732 0.98228 0.91954 1.12494 1.19846 0.80547 0.92384 1.00589 1.21380 0.94932 0.89131 1.21142 1.72199 1.21185 1.03505 0.99052 1.45992 1.04096 1.08712 1.65940 1.16789 0.91781 0.76687 0.80473 1.90849 1.25630 1.71856 1.53051 1.19561 0.93285 0.91283 1.51754 0.90575 1.25848 0.97192 0.98669 0.92530 1.69956 1.22480 1.14082 1.28918 0.86156 0.80780 0.78528 0.79920 1.18744 1.19954 1.18753 1.84303 1.16495 1.33006 1.68574 1.21408 0.90959 1.00872 0.93467 1.20025 0.91309 0.81514 1.15422 1.50447 1.02847 1.04244 0.96569 1.96373 1.69150 1.15640 1.54563 1.96156 0.90024 1.95494 1.54668 0.89292 0.90884 0.88074 0.83082 0.83382 0.83177 0.82780 0.84583 0.79422 0.90758 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.60 36.01 0.31 -0.74 16 2 C -0.03 -0.25 5.90 -104.34 -0.62 -0.87 16 3 C -0.12 -0.81 9.65 -39.65 -0.38 -1.19 16 4 C -0.05 -0.42 9.59 -38.95 -0.37 -0.80 16 5 C 0.01 0.14 5.89 -104.89 -0.62 -0.48 16 6 C -0.05 -0.72 7.10 -35.32 -0.25 -0.97 16 7 C -0.14 -1.57 10.22 -39.34 -0.40 -1.97 16 8 C -0.22 -2.66 10.87 -38.90 -0.42 -3.08 16 9 C 0.12 1.95 6.96 -37.93 -0.26 1.69 16 10 C -0.07 -1.23 10.57 -16.88 -0.18 -1.40 16 11 N -0.13 -2.85 10.54 30.77 0.32 -2.53 16 12 N -0.50 -11.13 5.88 28.68 0.17 -10.97 16 13 C 0.53 14.62 7.57 -15.81 -0.12 14.50 16 14 O -0.54 -17.37 15.14 4.80 0.07 -17.29 16 15 C -0.52 -13.54 9.20 -38.36 -0.35 -13.89 16 16 H 0.08 1.71 7.85 -52.48 -0.41 1.30 16 17 C 0.08 2.15 5.50 -17.32 -0.10 2.05 16 18 N -0.73 -20.45 11.68 55.56 0.65 -19.80 16 19 Si 0.92 18.23 29.56 -169.99 -5.03 13.21 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 O -0.13 -2.36 10.35 3.03 0.03 -2.33 16 24 C -0.05 -0.67 9.27 -38.94 -0.36 -1.03 16 25 C 0.00 0.05 6.85 -80.01 -0.55 -0.50 16 26 N -0.02 -0.30 4.98 33.93 0.17 -0.13 16 27 O -0.16 -3.08 19.16 -31.57 -0.60 -3.69 16 28 O -0.17 -2.59 15.91 -31.57 -0.50 -3.09 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.37 8.03 -51.93 -0.42 -0.04 16 31 H 0.10 0.97 5.73 -51.93 -0.30 0.67 16 32 H 0.15 0.52 8.05 -52.49 -0.42 0.10 16 33 H 0.15 0.69 7.00 -52.49 -0.37 0.33 16 34 H 0.15 1.05 7.29 -52.48 -0.38 0.67 16 35 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.75 7.96 -52.49 -0.42 1.33 16 37 H 0.37 6.52 8.41 -190.11 -1.60 4.92 16 38 H 0.28 7.06 8.29 -40.82 -0.34 6.72 16 39 H 0.16 2.64 7.43 -52.49 -0.39 2.25 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -35.93 360.48 -8.64 -44.58 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.69 Total: 5.28 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -4.67 Total: -8.68 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 1.31 Total: -33.42 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.00 Total: -26.40 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.93 -8.64 -44.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.972 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds