Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38643 * 119.77822 * 2 1 4 4 C 1.37645 * 120.21813 * 179.97438 * 3 2 1 5 5 C 1.40492 * 119.77958 * 359.97438 * 4 3 2 6 6 C 1.46486 * 120.22079 * 179.97438 * 5 4 3 7 7 C 1.40735 * 125.71250 * 359.71574 * 6 5 4 8 8 C 1.36279 * 107.29843 * 179.89272 * 7 6 5 9 9 C 1.41854 * 106.99235 * 0.36021 * 8 7 6 10 10 C 1.38963 * 125.98078 * 179.74315 * 9 8 7 11 11 N 1.32773 * 119.99698 * 180.02562 * 10 9 8 12 12 N 1.28999 * 119.99817 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99776 * 180.02562 * 12 11 10 14 14 O 1.22132 * 120.00112 * 359.97438 * 13 12 11 15 15 C 1.39434 * 119.99696 * 179.97438 * 13 12 11 16 16 H 1.08004 * 120.00143 * 359.97438 * 15 13 12 17 17 C 1.40306 * 119.99655 * 179.97438 * 15 13 12 18 18 N 1.30551 * 120.00278 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99872 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47372 * 60.00076 * 19 17 15 21 21 H 1.48496 * 109.47324 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47320 * 300.00101 * 19 17 15 23 23 O 1.34497 * 125.71015 * 180.02562 * 6 5 4 24 24 C 1.40458 * 119.56183 * 359.97438 * 5 4 3 25 25 C 1.37694 * 119.77103 * 359.76741 * 24 5 4 26 26 N 1.48020 * 119.88872 * 180.22663 * 25 24 5 27 27 O 1.31697 * 120.00074 * 6.67377 * 26 25 24 28 28 O 1.31705 * 119.99897 * 186.66934 * 26 25 24 29 29 H 1.08996 * 109.47107 * 97.19398 * 1 2 3 30 30 H 1.08997 * 109.46939 * 337.19279 * 1 2 3 31 31 H 1.09000 * 109.47104 * 217.19086 * 1 2 3 32 32 H 1.07990 * 119.88694 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.10984 * 179.97438 * 4 3 2 34 34 H 1.08006 * 126.34499 * 0.04050 * 7 6 5 35 35 H 1.07999 * 126.50711 * 180.13485 * 8 7 6 36 36 H 1.07997 * 120.00355 * 0.02562 * 10 9 8 37 37 H 0.97007 * 119.99662 * 359.97438 * 12 11 10 38 38 H 0.97001 * 120.00065 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.11572 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2034 0.0000 4 6 3.5720 1.2139 0.0005 5 6 4.2791 -0.0001 0.0016 6 6 5.7440 -0.0001 0.0016 7 6 6.5655 1.1426 -0.0051 8 6 7.8585 0.7121 -0.0001 9 6 7.8233 -0.7060 0.0012 10 6 8.9272 -1.5501 0.0008 11 7 8.7560 -2.8668 0.0016 12 7 9.7808 -3.6503 0.0018 13 6 9.6070 -4.9869 0.0021 14 8 8.4795 -5.4561 0.0027 15 6 10.7147 -5.8338 0.0018 16 1 11.7118 -5.4188 0.0009 17 6 10.5338 -7.2252 0.0026 18 7 9.3285 -7.7268 0.0032 19 14 12.0176 -8.3599 0.0015 20 1 12.8375 -8.1040 1.2129 21 1 11.5604 -9.7727 0.0020 22 1 12.8347 -8.1051 -1.2121 23 8 6.5290 -1.0922 0.0021 24 6 3.5722 -1.2138 0.0027 25 6 2.1953 -1.2030 0.0075 26 7 1.4477 -2.4805 0.0138 27 8 2.0933 -3.6206 0.1472 28 8 0.1369 -2.4771 -0.1141 29 1 -0.3633 -0.1287 -1.0195 30 1 -0.3633 0.9473 0.3983 31 1 -0.3633 -0.8187 0.6212 32 1 1.6502 2.1354 -0.0004 33 1 4.1066 2.1523 0.0001 34 1 6.2328 2.1701 -0.0105 35 1 8.7423 1.3327 -0.0010 36 1 9.9243 -1.1352 -0.0001 37 1 10.6764 -3.2776 0.0010 38 1 9.2035 -8.6887 0.0042 39 1 4.1067 -2.1522 0.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = 46.373606 kcal Electronic energy + Delta-G solvation = -27568.259990 eV Core-core repulsion = 23254.380888 eV Total energy + Delta-G solvation = -4313.879102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33257 -41.42608 -40.78430 -39.41725 -37.84223 -35.94287 -34.93450 -34.77390 -34.28293 -33.14599 -32.88451 -30.52277 -29.28322 -28.25645 -27.00318 -24.84693 -23.99361 -23.15029 -22.38969 -22.01972 -21.55836 -20.01679 -19.56359 -19.24141 -18.30047 -17.88253 -17.46368 -17.38601 -17.18589 -16.68530 -16.59642 -16.17786 -15.82563 -15.60065 -15.06722 -14.87083 -14.78857 -14.06827 -13.92111 -13.77079 -13.64656 -13.58774 -13.37445 -13.32431 -13.10593 -12.89769 -12.80599 -12.71407 -12.43934 -12.11689 -12.09844 -11.65678 -11.24306 -11.16822 -11.10988 -10.94743 -10.62272 -10.20336 -9.84298 -8.56307 -8.21266 -7.25352 -1.94307 -0.84577 -0.04332 -0.02835 0.18041 1.29625 1.35444 1.42249 1.54239 1.86121 1.97242 2.09262 2.28857 2.38308 2.44709 3.07009 3.17572 3.49174 3.53265 3.65128 3.71637 3.81162 3.87810 4.02586 4.30439 4.32940 4.35033 4.56380 4.63670 4.69395 4.71963 4.84413 4.90831 4.99146 5.02223 5.04983 5.17115 5.17857 5.36198 5.55993 5.64987 5.67327 5.83810 6.11465 6.51398 6.81175 7.41454 8.28722 8.45116 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.002409 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.401866 B =11618.469833 C =13854.897493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 C -0.094 4.094 4 C -0.014 4.014 5 C -0.013 4.013 6 C -0.050 4.050 7 C -0.133 4.133 8 C -0.160 4.160 9 C 0.029 3.971 10 C 0.002 3.998 11 N -0.239 5.239 12 N -0.520 5.520 13 C 0.521 3.479 14 O -0.612 6.612 15 C -0.547 4.547 16 H 0.107 0.893 17 C 0.025 3.975 18 N -0.793 5.793 19 Si 1.016 2.984 20 H -0.246 1.246 21 H -0.272 1.272 22 H -0.246 1.246 23 O -0.181 6.181 24 C -0.079 4.079 25 C -0.024 4.024 26 N -0.014 5.014 27 O -0.300 6.300 28 O -0.108 6.108 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.214 0.786 33 H 0.204 0.796 34 H 0.212 0.788 35 H 0.200 0.800 36 H 0.180 0.820 37 H 0.386 0.614 38 H 0.285 0.715 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 29.272 -0.181 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.009 4.009 3 C -0.111 4.111 4 C -0.031 4.031 5 C -0.014 4.014 6 C -0.103 4.103 7 C -0.151 4.151 8 C -0.184 4.184 9 C -0.024 4.024 10 C -0.197 4.197 11 N -0.062 5.062 12 N -0.267 5.267 13 C 0.335 3.665 14 O -0.497 6.497 15 C -0.582 4.582 16 H 0.125 0.875 17 C -0.195 4.195 18 N -0.420 5.420 19 Si 0.833 3.167 20 H -0.170 1.170 21 H -0.197 1.197 22 H -0.170 1.170 23 O -0.075 6.075 24 C -0.099 4.099 25 C -0.111 4.111 26 N 0.456 4.544 27 O -0.460 6.460 28 O -0.323 6.323 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.231 0.769 33 H 0.221 0.779 34 H 0.228 0.772 35 H 0.217 0.783 36 H 0.196 0.804 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.932 27.894 -0.147 29.290 hybrid contribution 1.384 -1.658 -0.001 2.160 sum -7.548 26.236 -0.148 27.301 Atomic orbital electron populations 1.21535 0.86478 1.06283 1.04961 1.20733 0.99619 0.89392 0.91198 1.21724 0.93299 0.97608 0.98484 1.22283 0.94473 0.97085 0.89306 1.18004 0.87863 0.92830 1.02706 1.21683 0.90218 0.85031 1.13385 1.22208 0.91112 0.99094 1.02688 1.22400 1.00471 0.89639 1.05883 1.20344 0.79893 0.94501 1.07674 1.22253 0.97454 0.87916 1.12027 1.72212 1.22050 1.05604 1.06321 1.44780 1.04731 1.07142 1.70011 1.17184 0.91219 0.78724 0.79398 1.90771 1.28069 1.74272 1.56630 1.20160 0.94182 0.92060 1.51802 0.87510 1.27346 1.00855 1.00593 0.90716 1.70164 1.26134 1.14708 1.31007 0.84800 0.75669 0.75262 0.80972 1.16970 1.19689 1.16983 1.84299 1.18094 1.35853 1.69229 1.21192 0.91827 1.00415 0.96436 1.20414 0.91120 0.81286 1.18319 1.50842 1.02688 1.05161 0.95705 1.96414 1.69333 1.17292 1.63011 1.96074 0.90863 1.95555 1.49856 0.88244 0.86214 0.90127 0.76875 0.77870 0.77168 0.78320 0.80370 0.77441 0.90420 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.60 71.24 0.61 -0.85 16 2 C -0.01 -0.11 5.90 -19.68 -0.12 -0.23 16 3 C -0.09 -0.59 9.65 22.23 0.21 -0.37 16 4 C -0.01 -0.12 9.59 22.68 0.22 0.10 16 5 C -0.01 -0.29 5.89 -20.04 -0.12 -0.40 16 6 C -0.05 -1.30 7.10 25.03 0.18 -1.12 16 7 C -0.13 -2.12 10.22 22.42 0.23 -1.89 16 8 C -0.16 -3.07 10.87 22.71 0.25 -2.82 16 9 C 0.03 0.92 6.96 23.34 0.16 1.09 16 10 C 0.00 0.07 10.57 84.72 0.90 0.97 16 11 N -0.24 -11.76 10.54 -56.57 -0.60 -12.36 16 12 N -0.52 -25.66 5.88 -181.23 -1.06 -26.72 16 13 C 0.52 31.93 7.57 84.53 0.64 32.57 16 14 O -0.61 -44.83 15.14 -5.75 -0.09 -44.92 16 15 C -0.55 -30.40 9.20 23.06 0.21 -30.19 16 16 H 0.11 4.99 7.85 -2.91 -0.02 4.97 16 17 C 0.02 1.36 5.50 85.39 0.47 1.83 16 18 N -0.79 -48.84 11.68 21.88 0.26 -48.58 16 19 Si 1.02 38.87 29.56 68.60 2.03 40.89 16 20 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 23 O -0.18 -6.92 10.35 -12.09 -0.13 -7.04 16 24 C -0.08 -2.46 9.27 22.68 0.21 -2.25 16 25 C -0.02 -0.66 6.85 36.33 0.25 -0.41 16 26 N -0.01 -0.50 4.98 -46.56 -0.23 -0.73 16 27 O -0.30 -13.70 19.16 3.52 0.07 -13.64 16 28 O -0.11 -3.31 15.91 3.51 0.06 -3.25 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 0.27 8.03 -2.39 -0.02 0.25 16 31 H 0.08 1.28 5.73 -2.39 -0.01 1.27 16 32 H 0.21 -1.00 8.05 -2.92 -0.02 -1.02 16 33 H 0.20 -0.32 7.00 -2.91 -0.02 -0.34 16 34 H 0.21 0.79 7.29 -2.91 -0.02 0.77 16 35 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.18 4.32 7.96 -2.91 -0.02 4.30 16 37 H 0.39 14.88 8.41 -219.71 -1.85 13.03 16 38 H 0.29 15.73 8.29 -92.71 -0.77 14.96 16 39 H 0.11 4.51 7.43 -2.91 -0.02 4.49 16 Total: -1.00 -103.95 360.48 3.90 -100.05 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.70 Total: 20.28 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.30 Total: -3.98 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -1.64 Total: -88.40 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -0.09 Total: -68.85 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -103.95 3.90 -100.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.425 kcal (2) G-P(sol) polarization free energy of solvation -103.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds