Wall clock time and date at job start Tue Mar 31 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86808 * 119.99738 * 2 1 4 4 H 1.48507 * 109.46835 * 274.98479 * 3 2 1 5 5 H 1.48501 * 109.47022 * 34.98457 * 3 2 1 6 6 H 1.48495 * 109.47003 * 154.98962 * 3 2 1 7 7 C 1.39902 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00524 * 147.53342 * 7 2 1 9 9 C 1.41134 * 119.99945 * 327.53762 * 7 2 1 10 10 C 1.40885 * 120.16408 * 157.96769 * 9 7 2 11 11 C 1.36359 * 119.83188 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16349 * 359.97438 * 11 10 9 13 13 N 1.39116 * 119.83211 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99987 * 37.85499 * 13 12 11 15 15 O 1.21581 * 119.99908 * 356.67506 * 14 13 12 16 16 C 1.47668 * 119.99676 * 176.67510 * 14 13 12 17 17 C 1.39738 * 120.02367 * 180.02562 * 16 14 13 18 18 C 1.37649 * 119.97387 * 179.97438 * 17 16 14 19 19 C 1.39508 * 120.02612 * 359.97438 * 18 17 16 20 20 C 1.48279 * 119.97657 * 179.97438 * 19 18 17 21 21 C 1.39406 * 120.12991 * 179.97438 * 20 19 18 22 22 C 1.37994 * 119.87150 * 180.02562 * 21 20 19 23 23 C 1.38338 * 120.12734 * 359.97438 * 22 21 20 24 24 C 1.38341 * 120.25607 * 0.27964 * 23 22 21 25 25 C 1.38002 * 120.12590 * 359.48616 * 24 23 22 26 26 C 1.39513 * 120.05568 * 0.25496 * 19 18 17 27 27 C 1.37661 * 120.02241 * 359.48838 * 26 19 18 28 28 C 1.39506 * 120.32935 * 0.27192 * 12 11 10 29 29 C 1.36354 * 120.16877 * 359.44709 * 28 12 11 30 30 H 0.96998 * 120.00043 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.08061 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.91755 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00416 * 217.85185 * 13 12 11 34 34 H 1.08003 * 120.01185 * 359.97438 * 17 16 14 35 35 H 1.08005 * 119.98698 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.06354 * 0.02562 * 21 20 19 37 37 H 1.07996 * 119.94115 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.87456 * 179.97438 * 23 22 21 39 39 H 1.07993 * 119.93437 * 179.74170 * 24 23 22 40 40 H 1.08004 * 120.06302 * 180.23273 * 25 24 23 41 41 H 1.08003 * 119.99334 * 179.74672 * 26 19 18 42 42 H 1.08005 * 120.01060 * 180.23318 * 27 26 19 43 43 H 1.08001 * 119.91844 * 179.72663 * 28 12 11 44 44 H 1.08004 * 120.08874 * 180.24783 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3949 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5919 7 6 2.0083 -1.2115 0.0005 8 1 2.9617 -1.2849 -0.5015 9 6 1.4681 -2.3380 0.6571 10 6 1.8863 -3.6346 0.2982 11 6 1.3595 -4.7183 0.9366 12 6 0.4092 -4.5454 1.9433 13 7 -0.1241 -5.6558 2.5897 14 6 0.6618 -6.7143 2.8701 15 8 1.8214 -6.7242 2.5047 16 6 0.1144 -7.8619 3.6210 17 6 0.9288 -8.9594 3.9124 18 6 0.4177 -10.0284 4.6129 19 6 -0.9128 -10.0162 5.0324 20 6 -1.4625 -11.1686 5.7864 21 6 -2.7914 -11.1595 6.2076 22 6 -3.2973 -12.2346 6.9094 23 6 -2.4886 -13.3201 7.1948 24 6 -1.1676 -13.3323 6.7839 25 6 -0.6522 -12.2650 6.0772 26 6 -1.7283 -8.9232 4.7379 27 6 -1.2179 -7.8506 4.0421 28 6 -0.0135 -3.2648 2.3006 29 6 0.5085 -2.1714 1.6750 30 1 -0.4850 0.8400 0.0004 31 1 2.6216 -3.7699 -0.4812 32 1 1.6788 -5.7129 0.6623 33 1 -1.0615 -5.6683 2.8388 34 1 1.9590 -8.9688 3.5881 35 1 1.0468 -10.8769 4.8379 36 1 -3.4237 -10.3128 5.9850 37 1 -4.3265 -12.2286 7.2366 38 1 -2.8886 -14.1591 7.7447 39 1 -0.5398 -14.1806 7.0131 40 1 0.3782 -12.2772 5.7537 41 1 -2.7593 -8.9166 5.0596 42 1 -1.8484 -7.0029 3.8175 43 1 -0.7528 -3.1388 3.0778 44 1 0.1832 -1.1804 1.9554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000581782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:10 Heat of formation + Delta-G solvation = 36.036234 kcal Electronic energy + Delta-G solvation = -26535.906386 eV Core-core repulsion = 22768.261380 eV Total energy + Delta-G solvation = -3767.645006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.131 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.40421 -39.56463 -38.20335 -37.06491 -34.53023 -33.34249 -32.80668 -31.78982 -30.78073 -29.73878 -29.50922 -28.63564 -25.38332 -24.12564 -23.71736 -22.08938 -21.68845 -21.28492 -20.68263 -19.70911 -18.27557 -17.43258 -17.17956 -16.39650 -16.24229 -15.48802 -15.20331 -14.97424 -14.64188 -14.57239 -14.21956 -14.14580 -13.99588 -13.68163 -13.60338 -13.31480 -13.11564 -12.70456 -12.44255 -12.26212 -12.09395 -11.97445 -11.72178 -11.46134 -11.43733 -11.16281 -10.97429 -10.91206 -10.55161 -10.18876 -9.94677 -9.75653 -9.49692 -9.32093 -9.19170 -9.10280 -8.71482 -8.30411 -7.56458 -7.16533 -6.90277 -4.28765 0.21301 1.04045 1.21526 1.41416 2.61767 2.95494 3.04132 3.08273 3.10536 3.23700 3.57004 3.70438 3.87805 3.97741 4.24414 4.36676 4.49019 4.56935 4.63904 4.75840 4.83262 4.96094 5.05499 5.07679 5.15571 5.40708 5.46363 5.60811 5.64870 5.69176 5.82260 5.96524 5.99580 6.13883 6.17164 6.18836 6.26700 6.41623 6.42461 6.59674 6.68213 6.75558 6.95104 6.98215 7.12763 7.27135 7.55197 7.67778 7.87394 8.00493 8.23611 8.26538 8.52998 8.73740 8.82051 8.98094 9.99754 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.001681 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.898213 B =16651.386928 C =17196.565768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.025 4.025 13 N -0.640 5.640 14 C 0.537 3.463 15 O -0.530 6.530 16 C -0.118 4.118 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.033 4.033 20 C -0.045 4.045 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.087 4.087 28 C -0.100 4.100 29 C -0.171 4.171 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.393 0.607 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 -20.257 12.812 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.117 4.117 13 N -0.283 5.283 14 C 0.325 3.675 15 O -0.408 6.408 16 C -0.121 4.121 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.033 4.033 20 C -0.045 4.045 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.106 4.106 28 C -0.120 4.120 29 C -0.191 4.191 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.198 -20.105 12.532 24.761 hybrid contribution -0.302 0.816 0.159 0.885 sum -7.500 -19.289 12.691 24.277 Atomic orbital electron populations 1.69944 1.08102 1.29922 1.31109 1.25948 0.94363 1.01552 0.91506 0.86505 0.81551 0.80776 0.79232 1.19428 1.19867 1.18058 1.19522 1.05434 0.93792 1.30406 0.89942 1.17612 0.89661 0.91864 0.89851 1.20595 1.07102 0.92288 1.04394 1.20312 0.96265 0.98057 0.93710 1.17033 1.07634 0.84746 1.02291 1.42834 1.11938 1.16026 1.57454 1.18212 0.85988 0.82892 0.80445 1.90762 1.17093 1.79960 1.53029 1.20221 0.94562 0.95968 1.01349 1.21232 1.00338 0.91361 0.94961 1.21169 0.94611 0.98830 0.98962 1.18926 0.93751 0.93433 0.97204 1.18839 0.93842 0.93662 0.98145 1.21297 0.94648 0.98777 0.98002 1.21112 0.99981 0.93796 0.98790 1.21249 0.94153 0.98443 1.00003 1.21115 0.95694 0.98454 0.98409 1.21309 0.99885 0.93162 0.98367 1.21110 0.99839 0.93115 0.99414 1.21284 0.94368 0.98292 0.96627 1.20165 1.00667 0.91551 0.99648 1.20610 1.02594 0.96627 0.99259 0.90559 0.88681 0.87922 0.77239 0.84297 0.85195 0.85531 0.85814 0.86030 0.85815 0.85516 0.85235 0.85265 0.89251 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.28 11.79 55.55 0.65 -18.62 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.09 16 3 Si 0.90 18.13 29.66 -169.99 -5.04 13.09 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.25 8.94 -37.86 -0.34 -12.59 16 8 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 9 C 0.11 3.03 5.57 -106.80 -0.60 2.43 16 10 C -0.22 -5.74 9.74 -39.26 -0.38 -6.13 16 11 C -0.06 -1.56 8.59 -39.78 -0.34 -1.90 16 12 C -0.03 -0.57 6.25 -83.61 -0.52 -1.09 16 13 N -0.64 -11.68 5.24 -10.64 -0.06 -11.74 16 14 C 0.54 9.87 7.57 -12.41 -0.09 9.78 16 15 O -0.53 -11.73 13.95 5.29 0.07 -11.65 16 16 C -0.12 -1.68 5.88 -104.93 -0.62 -2.29 16 17 C -0.06 -0.78 9.58 -39.24 -0.38 -1.15 16 18 C -0.12 -1.24 9.41 -39.32 -0.37 -1.61 16 19 C -0.03 -0.34 5.88 -104.82 -0.62 -0.95 16 20 C -0.04 -0.41 5.88 -104.90 -0.62 -1.03 16 21 C -0.11 -0.88 9.43 -39.24 -0.37 -1.25 16 22 C -0.12 -0.83 10.03 -39.63 -0.40 -1.23 16 23 C -0.12 -0.81 10.04 -39.51 -0.40 -1.21 16 24 C -0.12 -0.84 10.03 -39.63 -0.40 -1.24 16 25 C -0.11 -0.89 9.43 -39.23 -0.37 -1.26 16 26 C -0.12 -1.16 9.41 -39.32 -0.37 -1.53 16 27 C -0.09 -0.99 9.52 -39.24 -0.37 -1.36 16 28 C -0.10 -2.30 9.90 -39.79 -0.39 -2.70 16 29 C -0.17 -4.38 8.74 -39.26 -0.34 -4.72 16 30 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 31 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.10 2.48 6.45 -52.49 -0.34 2.14 16 33 H 0.39 5.69 6.84 -40.82 -0.28 5.41 16 34 H 0.14 1.82 7.64 -52.48 -0.40 1.42 16 35 H 0.13 1.05 6.19 -52.48 -0.32 0.73 16 36 H 0.13 0.82 6.19 -52.49 -0.33 0.49 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.85 6.19 -52.48 -0.33 0.53 16 41 H 0.13 0.95 6.19 -52.48 -0.32 0.63 16 42 H 0.13 1.21 6.39 -52.48 -0.34 0.88 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.11 2.77 6.53 -52.48 -0.34 2.43 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -31.09 371.75 -11.80 -42.88 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.67 Total: 11.39 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -8.36 Total: -30.94 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.60 Total: -30.36 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.09 -11.80 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000581782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.919 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds