Wall clock time and date at job start Tue Mar 31 2020 06:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86808 * 119.99738 * 2 1 4 4 H 1.48507 * 109.46835 * 274.98479 * 3 2 1 5 5 H 1.48501 * 109.47022 * 34.98457 * 3 2 1 6 6 H 1.48495 * 109.47003 * 154.98962 * 3 2 1 7 7 C 1.39902 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00524 * 147.53342 * 7 2 1 9 9 C 1.41134 * 119.99945 * 327.53762 * 7 2 1 10 10 C 1.40885 * 120.16408 * 157.96769 * 9 7 2 11 11 C 1.36359 * 119.83188 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16349 * 359.97438 * 11 10 9 13 13 N 1.39116 * 119.83211 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99987 * 37.85499 * 13 12 11 15 15 O 1.21581 * 119.99908 * 356.67506 * 14 13 12 16 16 C 1.47668 * 119.99676 * 176.67510 * 14 13 12 17 17 C 1.39738 * 120.02367 * 180.02562 * 16 14 13 18 18 C 1.37649 * 119.97387 * 179.97438 * 17 16 14 19 19 C 1.39508 * 120.02612 * 359.97438 * 18 17 16 20 20 C 1.48279 * 119.97657 * 179.97438 * 19 18 17 21 21 C 1.39406 * 120.12991 * 179.97438 * 20 19 18 22 22 C 1.37994 * 119.87150 * 180.02562 * 21 20 19 23 23 C 1.38338 * 120.12734 * 359.97438 * 22 21 20 24 24 C 1.38341 * 120.25607 * 0.27964 * 23 22 21 25 25 C 1.38002 * 120.12590 * 359.48616 * 24 23 22 26 26 C 1.39513 * 120.05568 * 0.25496 * 19 18 17 27 27 C 1.37661 * 120.02241 * 359.48838 * 26 19 18 28 28 C 1.39506 * 120.32935 * 0.27192 * 12 11 10 29 29 C 1.36354 * 120.16877 * 359.44709 * 28 12 11 30 30 H 0.96998 * 120.00043 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.08061 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.91755 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00416 * 217.85185 * 13 12 11 34 34 H 1.08003 * 120.01185 * 359.97438 * 17 16 14 35 35 H 1.08005 * 119.98698 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.06354 * 0.02562 * 21 20 19 37 37 H 1.07996 * 119.94115 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.87456 * 179.97438 * 23 22 21 39 39 H 1.07993 * 119.93437 * 179.74170 * 24 23 22 40 40 H 1.08004 * 120.06302 * 180.23273 * 25 24 23 41 41 H 1.08003 * 119.99334 * 179.74672 * 26 19 18 42 42 H 1.08005 * 120.01060 * 180.23318 * 27 26 19 43 43 H 1.08001 * 119.91844 * 179.72663 * 28 12 11 44 44 H 1.08004 * 120.08874 * 180.24783 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3949 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5919 7 6 2.0083 -1.2115 0.0005 8 1 2.9617 -1.2849 -0.5015 9 6 1.4681 -2.3380 0.6571 10 6 1.8863 -3.6346 0.2982 11 6 1.3595 -4.7183 0.9366 12 6 0.4092 -4.5454 1.9433 13 7 -0.1241 -5.6558 2.5897 14 6 0.6618 -6.7143 2.8701 15 8 1.8214 -6.7242 2.5047 16 6 0.1144 -7.8619 3.6210 17 6 0.9288 -8.9594 3.9124 18 6 0.4177 -10.0284 4.6129 19 6 -0.9128 -10.0162 5.0324 20 6 -1.4625 -11.1686 5.7864 21 6 -2.7914 -11.1595 6.2076 22 6 -3.2973 -12.2346 6.9094 23 6 -2.4886 -13.3201 7.1948 24 6 -1.1676 -13.3323 6.7839 25 6 -0.6522 -12.2650 6.0772 26 6 -1.7283 -8.9232 4.7379 27 6 -1.2179 -7.8506 4.0421 28 6 -0.0135 -3.2648 2.3006 29 6 0.5085 -2.1714 1.6750 30 1 -0.4850 0.8400 0.0004 31 1 2.6216 -3.7699 -0.4812 32 1 1.6788 -5.7129 0.6623 33 1 -1.0615 -5.6683 2.8388 34 1 1.9590 -8.9688 3.5881 35 1 1.0468 -10.8769 4.8379 36 1 -3.4237 -10.3128 5.9850 37 1 -4.3265 -12.2286 7.2366 38 1 -2.8886 -14.1591 7.7447 39 1 -0.5398 -14.1806 7.0131 40 1 0.3782 -12.2772 5.7537 41 1 -2.7593 -8.9166 5.0596 42 1 -1.8484 -7.0029 3.8175 43 1 -0.7528 -3.1388 3.0778 44 1 0.1832 -1.1804 1.9554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000581782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:09 Heat of formation + Delta-G solvation = 21.822480 kcal Electronic energy + Delta-G solvation = -26536.522741 eV Core-core repulsion = 22768.261380 eV Total energy + Delta-G solvation = -3768.261361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.131 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.57036 -40.55789 -39.35791 -38.58017 -36.26459 -34.94107 -33.77802 -32.51536 -31.57902 -31.42338 -31.05157 -29.87336 -26.99886 -25.24171 -24.46058 -23.53274 -22.78189 -22.43960 -22.06178 -21.08617 -19.46060 -19.21165 -18.17562 -17.88374 -17.04817 -16.90989 -16.37011 -16.20440 -15.99867 -15.76380 -15.23355 -15.06852 -14.95206 -14.81075 -14.75500 -14.41432 -14.27187 -14.02533 -13.96388 -13.79182 -13.44226 -13.16761 -13.06268 -12.84580 -12.69006 -12.40420 -12.33816 -12.03742 -11.92238 -11.61440 -11.59595 -11.19498 -10.85219 -10.71632 -10.51121 -10.05347 -9.84489 -9.50800 -9.12409 -8.97629 -8.73978 -6.25230 -0.61870 0.36284 0.51621 0.60654 0.89669 1.11739 1.37709 1.44732 1.55995 1.92574 2.19353 2.28439 2.59899 2.75844 3.11582 3.49748 3.66802 3.67964 3.81319 3.90076 4.11514 4.13842 4.25156 4.32400 4.36904 4.37237 4.46240 4.54503 4.71132 4.73205 4.87393 4.94574 5.00633 5.08466 5.12464 5.17413 5.23872 5.25422 5.26194 5.34766 5.40879 5.57066 5.62128 5.63048 5.73233 5.81724 5.86392 6.00039 6.06461 6.09044 6.32840 6.58692 6.67978 6.86801 6.95947 7.33348 8.18750 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.001681 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.898213 B =16651.386928 C =17196.565768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.053 3.947 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.245 4.245 11 C -0.076 4.076 12 C -0.014 4.014 13 N -0.634 5.634 14 C 0.538 3.462 15 O -0.576 6.576 16 C -0.146 4.146 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.022 4.022 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.079 4.079 28 C -0.098 4.098 29 C -0.188 4.188 30 H 0.295 0.705 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.414 0.586 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.125 0.875 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -21.521 15.064 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.265 4.265 11 C -0.096 4.096 12 C -0.107 4.107 13 N -0.279 5.279 14 C 0.329 3.671 15 O -0.457 6.457 16 C -0.149 4.149 17 C -0.089 4.089 18 C -0.138 4.138 19 C -0.023 4.023 20 C -0.070 4.070 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.098 4.098 28 C -0.117 4.117 29 C -0.208 4.208 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.252 0.748 34 H 0.144 0.856 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.143 0.857 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.543 -21.395 14.796 27.709 hybrid contribution 0.294 0.892 -0.406 1.023 sum -9.249 -20.503 14.390 26.702 Atomic orbital electron populations 1.69934 1.09374 1.31577 1.31014 1.26730 0.95091 1.04433 0.90453 0.85362 0.79615 0.76090 0.79721 1.18346 1.18356 1.18623 1.19722 1.05822 0.95337 1.32208 0.90653 1.17932 0.90730 0.92355 0.90879 1.20712 1.07919 0.92733 1.05131 1.20416 0.97120 0.97487 0.94548 1.17109 1.06237 0.86213 1.01103 1.42715 1.13090 1.14897 1.57182 1.18879 0.85350 0.83378 0.79517 1.90733 1.19214 1.80924 1.54873 1.19920 0.96292 0.95068 1.03623 1.21238 0.99891 0.92035 0.95725 1.21351 0.95349 0.98669 0.98403 1.19216 0.93456 0.93823 0.95781 1.18903 0.94785 0.93770 0.99547 1.21551 0.94338 0.99658 0.97758 1.21438 1.01143 0.93487 0.98384 1.21630 0.94008 0.98986 0.99227 1.21416 0.96331 0.98755 0.98058 1.21538 1.00391 0.93323 0.98465 1.21439 1.01210 0.92208 0.98559 1.21475 0.93073 0.99395 0.95811 1.20444 1.00742 0.90795 0.99760 1.20644 1.03230 0.97179 0.99752 0.89362 0.88955 0.88250 0.74798 0.85598 0.83091 0.84113 0.83705 0.83838 0.83951 0.84742 0.82197 0.83267 0.85705 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.39 11.79 21.82 0.26 -40.13 16 2 C 0.05 2.64 4.77 85.24 0.41 3.04 16 3 Si 0.97 37.44 29.66 68.60 2.03 39.47 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.50 -27.74 8.94 23.38 0.21 -27.53 16 8 H 0.08 4.08 8.02 -2.91 -0.02 4.06 16 9 C 0.08 4.69 5.57 -21.27 -0.12 4.57 16 10 C -0.24 -13.28 9.74 22.48 0.22 -13.06 16 11 C -0.08 -3.86 8.59 22.14 0.19 -3.67 16 12 C -0.01 -0.62 6.25 38.60 0.24 -0.38 16 13 N -0.63 -22.84 5.24 -305.85 -1.60 -24.45 16 14 C 0.54 20.06 7.57 86.73 0.66 20.72 16 15 O -0.58 -26.56 13.95 -3.97 -0.06 -26.62 16 16 C -0.15 -4.10 5.88 -20.06 -0.12 -4.22 16 17 C -0.07 -1.82 9.58 22.49 0.22 -1.60 16 18 C -0.12 -2.40 9.41 22.44 0.21 -2.19 16 19 C -0.02 -0.41 5.88 -19.99 -0.12 -0.53 16 20 C -0.07 -1.12 5.88 -20.04 -0.12 -1.23 16 21 C -0.12 -1.50 9.43 22.49 0.21 -1.29 16 22 C -0.13 -1.36 10.03 22.24 0.22 -1.13 16 23 C -0.12 -1.23 10.04 22.32 0.22 -1.01 16 24 C -0.13 -1.46 10.03 22.24 0.22 -1.23 16 25 C -0.12 -1.68 9.43 22.49 0.21 -1.47 16 26 C -0.12 -1.98 9.41 22.44 0.21 -1.77 16 27 C -0.08 -1.63 9.52 22.49 0.21 -1.41 16 28 C -0.10 -4.46 9.90 22.14 0.22 -4.24 16 29 C -0.19 -9.85 8.74 22.48 0.20 -9.66 16 30 H 0.30 13.24 8.30 -92.71 -0.77 12.47 16 31 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.10 5.05 6.45 -2.91 -0.02 5.03 16 33 H 0.41 11.25 6.84 -92.71 -0.63 10.61 16 34 H 0.13 3.50 7.64 -2.91 -0.02 3.48 16 35 H 0.15 2.25 6.19 -2.91 -0.02 2.23 16 36 H 0.14 1.30 6.19 -2.91 -0.02 1.28 16 37 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.14 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.13 1.55 6.19 -2.91 -0.02 1.53 16 41 H 0.16 1.70 6.19 -2.91 -0.02 1.68 16 42 H 0.15 2.35 6.39 -2.91 -0.02 2.34 16 43 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.10 5.30 6.53 -2.91 -0.02 5.28 16 Total: -1.00 -70.70 371.75 4.87 -65.83 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.43 Total: 35.17 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 3.81 Total: -49.28 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.35 Total: -64.58 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.06 Total: -26.62 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -70.70 4.87 -65.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000581782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.650 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds