Wall clock time and date at job start Tue Mar 31 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48503 * 109.47109 * 274.98622 * 3 2 1 5 5 H 1.48492 * 109.47065 * 34.98804 * 3 2 1 6 6 H 1.48500 * 109.47383 * 154.98817 * 3 2 1 7 7 C 1.39977 * 119.99509 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99796 * 147.61622 * 7 2 1 9 9 C 1.41073 * 120.00016 * 327.60990 * 7 2 1 10 10 C 1.40917 * 120.15366 * 157.86894 * 9 7 2 11 11 C 1.36324 * 119.83032 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16430 * 359.97438 * 11 10 9 13 13 N 1.38946 * 119.83702 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00150 * 37.90391 * 13 12 11 15 15 O 1.21435 * 119.99835 * 356.68372 * 14 13 12 16 16 C 1.48925 * 119.99994 * 176.67843 * 14 13 12 17 17 O 1.21502 * 119.99866 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99994 * 179.97438 * 16 14 13 19 19 N 1.40093 * 119.99968 * 180.02562 * 18 16 14 20 20 C 1.30257 * 119.99934 * 180.02562 * 19 18 16 21 21 C 1.46479 * 120.00202 * 179.97438 * 20 19 18 22 22 C 1.36481 * 125.34904 * 179.97438 * 21 20 19 23 23 C 1.37624 * 114.40088 * 179.97438 * 22 21 20 24 24 C 1.33796 * 115.21634 * 0.02562 * 23 22 21 25 25 S 1.75826 * 109.99532 * 359.73346 * 24 23 22 26 26 C 1.39565 * 120.31922 * 0.25528 * 12 11 10 27 27 C 1.36320 * 120.16935 * 359.48378 * 26 12 11 28 28 H 0.97001 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08782 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.91918 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99526 * 217.89992 * 13 12 11 32 32 H 0.97003 * 119.99641 * 0.27985 * 18 16 14 33 33 H 1.08004 * 120.00052 * 359.97438 * 20 19 18 34 34 H 1.08003 * 122.79801 * 0.02562 * 22 21 20 35 35 H 1.07995 * 122.38851 * 180.02562 * 23 22 21 36 36 H 1.08003 * 125.00422 * 179.97438 * 24 23 22 37 37 H 1.08010 * 119.91471 * 179.74269 * 26 12 11 38 38 H 1.07999 * 120.08677 * 180.25470 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3845 2.1072 -1.3948 5 1 1.4966 2.6198 0.8028 6 1 3.5887 1.4120 0.5920 7 6 2.0081 -1.2123 -0.0005 8 1 2.9622 -1.2849 -0.5015 9 6 1.4672 -2.3392 0.6534 10 6 1.8843 -3.6357 0.2913 11 6 1.3569 -4.7200 0.9272 12 6 0.4067 -4.5486 1.9350 13 7 -0.1267 -5.6586 2.5783 14 6 0.6584 -6.7180 2.8569 15 8 1.8168 -6.7277 2.4925 16 6 0.1055 -7.8767 3.6117 17 8 -1.0536 -7.8670 3.9759 18 7 0.8906 -8.9363 3.8898 19 7 0.3703 -10.0264 4.5994 20 6 1.1291 -11.0503 4.8687 21 6 0.5853 -12.1899 5.6111 22 6 1.2795 -13.3148 5.9508 23 6 0.5462 -14.2459 6.6503 24 6 -0.7263 -13.9078 6.8878 25 16 -1.0630 -12.3203 6.2110 26 6 -0.0146 -3.2678 2.2956 27 6 0.5078 -2.1739 1.6721 28 1 -0.4850 0.8401 0.0004 29 1 2.6199 -3.7699 -0.4880 30 1 1.6753 -5.7143 0.6505 31 1 -1.0643 -5.6710 2.8269 32 1 1.8168 -8.9424 3.6019 33 1 2.1593 -11.0590 4.5445 34 1 2.3180 -13.4616 5.6929 35 1 0.9679 -15.1826 6.9837 36 1 -1.4405 -14.5182 7.4205 37 1 -0.7534 -3.1429 3.0735 38 1 0.1839 -1.1832 1.9551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002428574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:36 Heat of formation + Delta-G solvation = 36.377027 kcal Electronic energy + Delta-G solvation = -24463.317177 eV Core-core repulsion = 20591.757463 eV Total energy + Delta-G solvation = -3871.559715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 343.078 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -40.58437 -38.86118 -38.17627 -37.24606 -36.73092 -34.73162 -33.23523 -32.74844 -29.70390 -29.58656 -29.18307 -26.18667 -25.06326 -23.78514 -22.10497 -21.49594 -20.88137 -20.12198 -19.64725 -18.79767 -17.58751 -17.48861 -16.99714 -16.31339 -15.98546 -15.80123 -15.75988 -15.29227 -14.30871 -14.23978 -14.03868 -13.72149 -13.69008 -13.13021 -13.08745 -12.78039 -12.56919 -12.42257 -12.23161 -12.10934 -11.59584 -11.50333 -11.23104 -11.20057 -11.00222 -10.69118 -10.63476 -10.23566 -10.00501 -9.88586 -9.54949 -9.19453 -8.86001 -8.84603 -8.51296 -7.66567 -7.29384 -7.00802 -4.38786 0.05503 1.22238 1.29869 1.66665 1.83559 1.88192 2.53572 2.66106 2.97349 3.00481 3.02454 3.11941 3.46411 3.58926 3.81032 4.22578 4.39328 4.61344 4.66679 4.73811 5.05586 5.06995 5.21715 5.55780 5.62473 5.86699 5.99182 6.10961 6.28049 6.54848 6.60972 6.74560 6.88101 6.95646 7.00246 7.14927 7.43702 7.51760 7.67418 7.90076 7.94357 8.09046 8.12936 8.36873 8.47969 8.71880 8.85519 9.90167 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.045398 B = 0.001594 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.618500 B =17566.602757 C =17954.073963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.458 4.458 8 H 0.085 0.915 9 C 0.116 3.884 10 C -0.225 4.225 11 C -0.059 4.059 12 C -0.041 4.041 13 N -0.600 5.600 14 C 0.492 3.508 15 O -0.517 6.517 16 C 0.530 3.470 17 O -0.486 6.486 18 N -0.558 5.558 19 N -0.229 5.229 20 C 0.137 3.863 21 C -0.162 4.162 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.219 4.219 25 S 0.184 5.816 26 C -0.091 4.091 27 C -0.172 4.172 28 H 0.286 0.714 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.408 0.592 32 H 0.403 0.597 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -21.784 11.094 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.103 0.897 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.078 4.078 12 C -0.133 4.133 13 N -0.244 5.244 14 C 0.271 3.729 15 O -0.395 6.395 16 C 0.312 3.688 17 O -0.356 6.356 18 N -0.303 5.303 19 N -0.035 5.035 20 C -0.074 4.074 21 C -0.283 4.283 22 C -0.137 4.137 23 C -0.171 4.171 24 C -0.357 4.357 25 S 0.449 5.551 26 C -0.111 4.111 27 C -0.192 4.192 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.243 0.757 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.111 0.889 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.236 -20.095 11.022 23.029 hybrid contribution 2.356 -0.441 -0.092 2.399 sum 0.120 -20.536 10.930 23.264 Atomic orbital electron populations 1.69918 1.08174 1.30213 1.30097 1.26005 0.94406 1.01731 0.91457 0.86459 0.81507 0.80546 0.79330 1.19331 1.19767 1.17983 1.19582 1.05327 0.93689 1.29955 0.89747 1.17641 0.89466 0.91914 0.89702 1.20570 1.07232 0.92186 1.04540 1.20286 0.95907 0.98103 0.93545 1.17012 1.08758 0.84320 1.03174 1.42559 1.12619 1.14622 1.54561 1.19426 0.86535 0.84246 0.82644 1.90779 1.16645 1.79610 1.52434 1.20356 0.85848 0.82368 0.80241 1.90791 1.16357 1.79133 1.49347 1.46481 1.14768 1.14997 1.54017 1.75040 1.26056 0.95370 1.07004 1.23475 0.97388 0.90491 0.96086 1.22694 0.98706 0.97999 1.08853 1.20670 1.01261 0.92081 0.99680 1.19995 0.93649 1.01385 1.02082 1.26090 1.00934 1.00996 1.07679 1.84809 1.08634 1.12438 1.49226 1.20187 1.00203 0.91276 0.99424 1.20623 1.02613 0.96673 0.99251 0.90323 0.88490 0.87879 0.75625 0.75724 0.84741 0.83538 0.83924 0.81625 0.88870 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.64 11.79 55.55 0.65 -17.99 16 2 C 0.09 2.08 4.77 -17.33 -0.08 1.99 16 3 Si 0.90 17.59 29.66 -169.99 -5.04 12.55 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.70 8.94 -37.86 -0.34 -12.03 16 8 H 0.08 2.08 8.02 -52.48 -0.42 1.65 16 9 C 0.12 3.00 5.57 -106.80 -0.59 2.40 16 10 C -0.23 -5.53 9.74 -39.26 -0.38 -5.92 16 11 C -0.06 -1.37 8.59 -39.77 -0.34 -1.71 16 12 C -0.04 -0.90 6.25 -83.65 -0.52 -1.42 16 13 N -0.60 -11.21 5.28 -10.30 -0.05 -11.27 16 14 C 0.49 8.84 7.68 -11.83 -0.09 8.75 16 15 O -0.52 -10.23 14.09 5.42 0.08 -10.15 16 16 C 0.53 8.59 7.99 -11.83 -0.09 8.50 16 17 O -0.49 -8.82 16.81 5.36 0.09 -8.73 16 18 N -0.56 -7.53 6.26 30.79 0.19 -7.33 16 19 N -0.23 -2.95 10.81 32.00 0.35 -2.60 16 20 C 0.14 1.26 10.93 -14.90 -0.16 1.10 16 21 C -0.16 -1.39 6.44 -36.90 -0.24 -1.63 16 22 C -0.10 -0.64 10.18 -40.44 -0.41 -1.06 16 23 C -0.14 -0.82 10.14 -41.36 -0.42 -1.24 16 24 C -0.22 -1.38 11.21 29.17 0.33 -1.06 16 25 S 0.18 1.62 23.07 -107.50 -2.48 -0.86 16 26 C -0.09 -2.05 9.90 -39.78 -0.39 -2.45 16 27 C -0.17 -4.28 8.74 -39.26 -0.34 -4.62 16 28 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.31 6.45 -52.49 -0.34 1.98 16 31 H 0.41 6.74 8.28 -40.82 -0.34 6.40 16 32 H 0.40 4.53 8.12 -182.60 -1.48 3.04 16 33 H 0.14 0.80 8.03 -52.48 -0.42 0.38 16 34 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.17 0.67 8.06 -52.48 -0.42 0.24 16 37 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.11 2.75 6.53 -52.49 -0.34 2.40 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -30.57 360.15 -9.47 -40.04 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.59 Total: 11.31 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -4.09 Total: -10.39 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 1.14 Total: -39.19 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.17 Total: -18.88 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.04 Total: 12.55 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.57 -9.47 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002428574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.414 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds