Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99687 * 2 1 4 4 C 1.38734 * 119.94584 * 359.97438 * 3 2 1 5 5 C 1.37923 * 120.12940 * 179.97438 * 4 3 2 6 6 C 1.39484 * 120.02115 * 0.02562 * 5 4 3 7 7 C 1.48141 * 120.05841 * 179.97438 * 6 5 4 8 8 C 1.39654 * 119.49565 * 359.75339 * 7 6 5 9 9 C 1.38021 * 119.42392 * 179.70947 * 8 7 6 10 10 C 1.40166 * 118.46875 * 0.54930 * 9 8 7 11 11 C 1.43199 * 120.51365 * 179.75665 * 10 9 8 12 12 N 9.55630 * 148.18964 * 179.97438 * 3 1 2 13 13 C 1.40740 * 118.97775 * 359.73242 * 10 9 8 14 14 S 1.76202 * 119.77061 * 179.97438 * 13 10 9 15 15 C 1.76199 * 100.00102 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00287 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31549 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00259 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46912 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47339 * 119.99488 * 19 17 15 22 22 H 1.48502 * 109.47162 * 239.99777 * 19 17 15 23 23 N 1.32342 * 120.46300 * 359.97438 * 13 10 9 24 24 C 1.39495 * 119.88632 * 359.97438 * 6 5 4 25 25 C 1.38256 * 119.87028 * 0.02562 * 24 6 5 26 26 O 1.36000 * 120.01063 * 179.97438 * 25 24 6 27 27 C 1.42898 * 117.00007 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47061 * 60.00158 * 1 2 3 29 29 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47733 * 299.99999 * 1 2 3 31 31 H 1.07992 * 119.93369 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.99369 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.28835 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.76660 * 180.27920 * 9 8 7 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.06247 * 179.72127 * 24 6 5 37 37 H 1.08998 * 109.47136 * 180.02562 * 27 26 25 38 38 H 1.09003 * 109.46822 * 299.99880 * 27 26 25 39 39 H 1.09003 * 109.47182 * 59.99668 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2892 2.3737 -0.0005 5 6 1.9113 3.6047 0.0000 6 6 3.3040 3.6827 0.0005 7 6 3.9731 5.0044 0.0005 8 6 3.1992 6.1669 -0.0052 9 6 3.8241 7.3975 0.0009 10 6 5.2252 7.4354 0.0009 11 6 5.9187 8.6882 0.0019 12 7 6.4688 9.6821 -0.0023 13 6 5.9401 6.2230 0.0005 14 16 7.7019 6.2463 -0.0001 15 6 8.0308 4.5152 0.0004 16 1 7.2127 3.8101 0.0013 17 6 9.3412 4.0578 0.0007 18 7 10.3377 4.9166 0.0000 19 14 9.6899 2.2226 0.0004 20 1 8.4067 1.4750 0.0006 21 1 10.4702 1.8671 -1.2120 22 1 10.4698 1.8668 1.2131 23 7 5.2983 5.0657 0.0006 24 6 4.0657 2.5141 0.0011 25 6 3.4372 1.2826 0.0005 26 8 4.1770 0.1414 0.0005 27 6 5.5983 0.2896 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2109 2.3149 -0.0005 32 1 1.3201 4.5085 0.0000 33 1 2.1211 6.1035 -0.0101 34 1 3.2468 8.3103 0.0011 35 1 11.2535 4.5968 0.0006 36 1 5.1442 2.5712 -0.0031 37 1 6.0663 -0.6948 0.0001 38 1 5.9063 0.8383 -0.8895 39 1 5.9064 0.8384 0.8905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002863339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = 13.872006 kcal Electronic energy + Delta-G solvation = -26028.587246 eV Core-core repulsion = 22221.477551 eV Total energy + Delta-G solvation = -3807.109695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.082 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61100 -39.49935 -38.41240 -36.90508 -35.91260 -32.89269 -32.36401 -31.85674 -30.31011 -29.36096 -27.32137 -27.07207 -25.95480 -24.27761 -23.49743 -21.78889 -21.44083 -18.95579 -18.51338 -18.00099 -17.21833 -16.86905 -16.07504 -16.04306 -15.63862 -15.20124 -15.14077 -14.96559 -14.56490 -14.39781 -14.13360 -13.51874 -13.30283 -13.09409 -12.94245 -12.85905 -12.43229 -12.41633 -12.23791 -12.13367 -11.87329 -11.38399 -11.34140 -11.23812 -11.21111 -11.14626 -11.02272 -10.96210 -10.28137 -9.90440 -9.43557 -9.15062 -9.02339 -8.91046 -8.48307 -7.64130 -6.98389 -6.64366 -4.35578 0.56938 1.37717 1.64339 1.73140 2.78127 3.03782 3.08126 3.13629 3.17115 3.17739 3.36431 3.37184 3.82152 3.84709 4.29681 4.40916 4.54580 4.70691 4.80641 4.82445 4.89896 4.98728 5.04343 5.18831 5.23012 5.30025 5.35745 5.39384 5.43597 5.51034 5.63845 5.70529 5.78077 5.83296 6.07497 6.17838 6.26456 6.41193 6.63362 6.69134 6.90397 7.03450 7.39928 7.58302 7.98523 8.21562 8.36657 8.86461 10.42973 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.004535 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.688446 B = 6172.468599 C = 9214.708477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.104 3.896 4 C -0.181 4.181 5 C -0.094 4.094 6 C -0.041 4.041 7 C 0.218 3.782 8 C -0.223 4.223 9 C 0.001 3.999 10 C -0.123 4.123 11 C 0.273 3.727 12 N -0.434 5.434 13 C 0.145 3.855 14 S 0.141 5.859 15 C -0.538 4.538 16 H 0.111 0.889 17 C 0.074 3.926 18 N -0.866 5.866 19 Si 0.928 3.072 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 N -0.473 5.473 24 C -0.127 4.127 25 C 0.093 3.907 26 O -0.310 6.310 27 C 0.023 3.977 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.276 0.724 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 -7.285 0.004 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.058 3.942 4 C -0.199 4.199 5 C -0.113 4.113 6 C -0.043 4.043 7 C 0.071 3.929 8 C -0.251 4.251 9 C -0.027 4.027 10 C -0.141 4.141 11 C -0.042 4.042 12 N -0.111 5.111 13 C -0.106 4.106 14 S 0.399 5.601 15 C -0.686 4.686 16 H 0.129 0.871 17 C -0.136 4.136 18 N -0.499 5.499 19 Si 0.753 3.247 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 N -0.186 5.186 24 C -0.147 4.147 25 C 0.047 3.953 26 O -0.224 6.224 27 C -0.072 4.072 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.173 0.827 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.606 -5.987 -0.005 16.715 hybrid contribution -1.239 -1.344 0.005 1.828 sum -16.845 -7.331 0.001 18.371 Atomic orbital electron populations 1.23051 0.78858 1.03770 1.01199 1.86157 1.20786 1.26172 1.88892 1.18383 0.89113 0.85103 1.01569 1.20882 0.99718 0.91185 1.08152 1.20928 0.93150 0.97327 0.99911 1.18260 0.92196 0.90875 1.02940 1.19854 0.89602 0.91801 0.91647 1.21481 1.00462 0.91793 1.11352 1.21185 0.91668 0.98169 0.91695 1.16404 0.92645 0.86927 1.18084 1.25297 0.93261 0.92435 0.93194 1.81136 1.07707 1.11725 1.10539 1.24299 1.03458 0.88435 0.94408 1.83901 0.86218 1.12737 1.77200 1.23509 0.95962 0.91324 1.57821 0.87088 1.25215 0.94869 1.00295 0.93230 1.69948 0.99960 1.35057 1.44913 0.85962 0.78937 0.81622 0.78218 1.18668 1.20216 1.20221 1.68229 1.08004 1.26179 1.16208 1.21467 1.02027 0.89699 1.01493 1.18185 0.88153 0.86304 1.02624 1.86116 1.19145 1.27973 1.89121 1.23170 0.77837 1.03760 1.02417 0.92731 0.88440 0.92723 0.84622 0.84836 0.84819 0.84710 0.91373 0.82713 0.88355 0.92124 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.90 10.27 -34.10 -0.35 -4.25 16 3 C 0.10 1.41 6.70 -39.00 -0.26 1.15 16 4 C -0.18 -1.99 9.02 -39.51 -0.36 -2.35 16 5 C -0.09 -1.09 9.40 -39.23 -0.37 -1.46 16 6 C -0.04 -0.62 5.88 -104.90 -0.62 -1.24 16 7 C 0.22 3.61 6.73 -82.92 -0.56 3.05 16 8 C -0.22 -3.00 9.43 -39.13 -0.37 -3.37 16 9 C 0.00 0.02 9.89 -38.94 -0.38 -0.37 16 10 C -0.12 -2.20 5.78 -106.30 -0.61 -2.81 16 11 C 0.27 5.15 14.30 -22.47 -0.32 4.83 16 12 N -0.43 -8.71 18.54 41.84 0.78 -7.94 16 13 C 0.15 3.03 7.00 -16.39 -0.11 2.92 16 14 S 0.14 3.44 20.63 -107.50 -2.22 1.23 16 15 C -0.54 -13.83 9.26 30.94 0.29 -13.54 16 16 H 0.11 2.78 6.54 -52.48 -0.34 2.43 16 17 C 0.07 1.90 5.49 -17.47 -0.10 1.80 16 18 N -0.87 -23.44 13.22 55.49 0.73 -22.71 16 19 Si 0.93 19.39 29.55 -169.99 -5.02 14.36 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 N -0.47 -9.53 7.47 -8.23 -0.06 -9.59 16 24 C -0.13 -2.06 8.55 -39.11 -0.33 -2.39 16 25 C 0.09 1.44 6.69 -39.18 -0.26 1.18 16 26 O -0.31 -4.86 10.28 -34.40 -0.35 -5.22 16 27 C 0.02 0.32 9.81 101.05 0.99 1.31 16 28 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.14 1.05 6.28 -52.49 -0.33 0.72 16 32 H 0.13 1.16 6.14 -52.48 -0.32 0.84 16 33 H 0.13 1.29 6.14 -52.49 -0.32 0.97 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.16 2.75 5.75 -52.48 -0.30 2.45 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 39 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -30.44 359.17 -7.09 -37.53 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.61 Total: 1.27 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.39 Total: -10.10 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 1.45 Total: -40.24 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.70 Total: -9.47 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.22 Total: 1.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.44 -7.09 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002863339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.399 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds