Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99687 * 2 1 4 4 C 1.38734 * 119.94584 * 359.97438 * 3 2 1 5 5 C 1.37923 * 120.12940 * 179.97438 * 4 3 2 6 6 C 1.39484 * 120.02115 * 0.02562 * 5 4 3 7 7 C 1.48141 * 120.05841 * 179.97438 * 6 5 4 8 8 C 1.39654 * 119.49565 * 359.75339 * 7 6 5 9 9 C 1.38021 * 119.42392 * 179.70947 * 8 7 6 10 10 C 1.40166 * 118.46875 * 0.54930 * 9 8 7 11 11 C 1.43199 * 120.51365 * 179.75665 * 10 9 8 12 12 N 9.55630 * 148.18964 * 179.97438 * 3 1 2 13 13 C 1.40740 * 118.97775 * 359.73242 * 10 9 8 14 14 S 1.76202 * 119.77061 * 179.97438 * 13 10 9 15 15 C 1.76199 * 100.00102 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00287 * 359.97438 * 15 14 13 17 17 C 1.38795 * 120.00091 * 180.02562 * 15 14 13 18 18 N 1.31549 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00259 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46912 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47339 * 119.99488 * 19 17 15 22 22 H 1.48502 * 109.47162 * 239.99777 * 19 17 15 23 23 N 1.32342 * 120.46300 * 359.97438 * 13 10 9 24 24 C 1.39495 * 119.88632 * 359.97438 * 6 5 4 25 25 C 1.38256 * 119.87028 * 0.02562 * 24 6 5 26 26 O 1.36000 * 120.01063 * 179.97438 * 25 24 6 27 27 C 1.42898 * 117.00007 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.47061 * 60.00158 * 1 2 3 29 29 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47733 * 299.99999 * 1 2 3 31 31 H 1.07992 * 119.93369 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.99369 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.28835 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.76660 * 180.27920 * 9 8 7 35 35 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.06247 * 179.72127 * 24 6 5 37 37 H 1.08998 * 109.47136 * 180.02562 * 27 26 25 38 38 H 1.09003 * 109.46822 * 299.99880 * 27 26 25 39 39 H 1.09003 * 109.47182 * 59.99668 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2892 2.3737 -0.0005 5 6 1.9113 3.6047 0.0000 6 6 3.3040 3.6827 0.0005 7 6 3.9731 5.0044 0.0005 8 6 3.1992 6.1669 -0.0052 9 6 3.8241 7.3975 0.0009 10 6 5.2252 7.4354 0.0009 11 6 5.9187 8.6882 0.0019 12 7 6.4688 9.6821 -0.0023 13 6 5.9401 6.2230 0.0005 14 16 7.7019 6.2463 -0.0001 15 6 8.0308 4.5152 0.0004 16 1 7.2127 3.8101 0.0013 17 6 9.3412 4.0578 0.0007 18 7 10.3377 4.9166 0.0000 19 14 9.6899 2.2226 0.0004 20 1 8.4067 1.4750 0.0006 21 1 10.4702 1.8671 -1.2120 22 1 10.4698 1.8668 1.2131 23 7 5.2983 5.0657 0.0006 24 6 4.0657 2.5141 0.0011 25 6 3.4372 1.2826 0.0005 26 8 4.1770 0.1414 0.0005 27 6 5.5983 0.2896 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2109 2.3149 -0.0005 32 1 1.3201 4.5085 0.0000 33 1 2.1211 6.1035 -0.0101 34 1 3.2468 8.3103 0.0011 35 1 11.2535 4.5968 0.0006 36 1 5.1442 2.5712 -0.0031 37 1 6.0663 -0.6948 0.0001 38 1 5.9063 0.8383 -0.8895 39 1 5.9064 0.8384 0.8905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002863339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -4.381806 kcal Electronic energy + Delta-G solvation = -26029.378791 eV Core-core repulsion = 22221.477551 eV Total energy + Delta-G solvation = -3807.901239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67561 -40.81381 -39.40943 -38.06424 -37.34888 -34.77153 -33.70264 -33.12552 -31.33513 -30.47773 -28.22827 -28.05697 -27.82724 -25.57711 -24.75271 -22.91497 -22.49885 -20.50292 -19.69950 -19.38320 -18.46740 -18.04371 -17.31622 -17.03648 -16.97410 -16.86352 -16.14422 -16.14359 -15.71507 -15.58454 -15.35465 -14.98814 -14.67528 -14.31169 -14.29504 -13.96771 -13.88576 -13.52100 -13.48913 -13.28730 -13.03303 -13.03034 -12.96463 -12.80155 -12.21031 -12.18634 -12.06239 -11.98912 -11.93336 -11.45385 -10.87622 -10.86052 -10.54040 -10.30094 -9.62956 -8.90404 -8.56243 -8.52418 -6.30940 -0.68530 0.30959 0.38727 0.57725 1.13782 1.35923 1.36207 1.50280 1.63248 2.00746 2.10000 2.31376 2.36941 2.64479 2.89070 2.89232 2.99432 3.12655 3.41232 3.76608 3.96354 4.04023 4.05939 4.19897 4.27569 4.30535 4.40081 4.47590 4.50995 4.52159 4.54406 4.66469 4.73203 4.84011 4.96528 5.06568 5.13819 5.30290 5.47056 5.55095 5.64165 5.72312 6.07606 6.27536 6.47986 6.59395 6.93529 6.99279 8.57225 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.004535 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.688446 B = 6172.468599 C = 9214.708477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.105 3.895 4 C -0.168 4.168 5 C -0.071 4.071 6 C -0.067 4.067 7 C 0.201 3.799 8 C -0.185 4.185 9 C 0.015 3.985 10 C -0.123 4.123 11 C 0.284 3.716 12 N -0.458 5.458 13 C 0.146 3.854 14 S 0.037 5.963 15 C -0.542 4.542 16 H 0.106 0.894 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.987 3.013 20 H -0.245 1.245 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.506 5.506 24 C -0.145 4.145 25 C 0.063 3.937 26 O -0.323 6.323 27 C 0.024 3.976 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.187 0.813 35 H 0.276 0.724 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.522 -7.667 0.000 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.058 3.942 4 C -0.186 4.186 5 C -0.090 4.090 6 C -0.069 4.069 7 C 0.057 3.943 8 C -0.210 4.210 9 C -0.013 4.013 10 C -0.140 4.140 11 C -0.030 4.030 12 N -0.135 5.135 13 C -0.106 4.106 14 S 0.290 5.710 15 C -0.689 4.689 16 H 0.124 0.876 17 C -0.183 4.183 18 N -0.546 5.546 19 Si 0.808 3.192 20 H -0.168 1.168 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.219 5.219 24 C -0.165 4.165 25 C 0.018 3.982 26 O -0.238 6.238 27 C -0.070 4.070 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.198 0.802 32 H 0.196 0.804 33 H 0.210 0.790 34 H 0.204 0.796 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.843 -6.375 -0.008 22.755 hybrid contribution 0.136 -1.239 0.006 1.246 sum -21.707 -7.614 -0.002 23.004 Atomic orbital electron populations 1.23439 0.76007 1.05636 1.02889 1.86137 1.23761 1.26049 1.88558 1.18652 0.88536 0.86557 1.00416 1.21362 1.01627 0.89740 1.05890 1.21355 0.91406 0.99340 0.96904 1.18394 0.93822 0.89444 1.05215 1.20420 0.88562 0.94102 0.91182 1.22147 1.03000 0.89859 1.05944 1.21790 0.89571 1.00622 0.89338 1.16671 0.94528 0.85182 1.17605 1.25476 0.92739 0.92361 0.92467 1.81136 1.08120 1.12993 1.11278 1.23871 1.01251 0.89939 0.95532 1.83908 0.91272 1.13338 1.82485 1.23553 0.96045 0.91376 1.57973 0.87638 1.26128 0.94572 1.04678 0.92955 1.70076 1.00176 1.36927 1.47410 0.85074 0.79403 0.76539 0.78220 1.16834 1.19821 1.19825 1.68100 1.10485 1.26251 1.17050 1.21299 1.00911 0.91111 1.03187 1.18471 0.89444 0.85833 1.04446 1.86077 1.19570 1.28628 1.89511 1.23205 0.77694 1.04860 1.01282 0.90901 0.86841 0.90895 0.80242 0.80402 0.78954 0.79560 0.91473 0.85821 0.85861 0.93297 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -7.51 10.27 -78.46 -0.81 -8.31 16 3 C 0.10 2.56 6.70 22.65 0.15 2.71 16 4 C -0.17 -2.78 9.02 22.31 0.20 -2.58 16 5 C -0.07 -1.25 9.40 22.50 0.21 -1.03 16 6 C -0.07 -1.86 5.88 -20.04 -0.12 -1.97 16 7 C 0.20 6.17 6.73 41.99 0.28 6.45 16 8 C -0.18 -3.85 9.43 22.56 0.21 -3.64 16 9 C 0.01 0.33 9.89 22.69 0.22 0.56 16 10 C -0.12 -4.24 5.78 -20.95 -0.12 -4.37 16 11 C 0.28 10.63 14.30 88.33 1.26 11.90 16 12 N -0.46 -18.48 18.54 19.00 0.35 -18.13 16 13 C 0.15 6.26 7.00 85.23 0.60 6.86 16 14 S 0.04 1.93 20.63 -56.49 -1.17 0.76 16 15 C -0.54 -29.98 9.26 67.95 0.63 -29.35 16 16 H 0.11 5.73 6.54 -2.91 -0.02 5.71 16 17 C 0.02 1.19 5.49 84.87 0.47 1.65 16 18 N -0.91 -52.93 13.22 21.64 0.29 -52.65 16 19 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 20 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 N -0.51 -20.71 7.47 -179.95 -1.34 -22.05 16 24 C -0.15 -4.76 8.55 22.58 0.19 -4.56 16 25 C 0.06 1.94 6.69 22.53 0.15 2.09 16 26 O -0.32 -10.38 10.28 -79.54 -0.82 -11.20 16 27 C 0.02 0.71 9.81 113.37 1.11 1.82 16 28 H 0.07 0.52 7.65 -2.38 -0.02 0.50 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 31 H 0.18 1.40 6.28 -2.91 -0.02 1.38 16 32 H 0.18 1.46 6.14 -2.91 -0.02 1.44 16 33 H 0.19 1.84 6.14 -2.91 -0.02 1.82 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.28 14.92 8.31 -92.70 -0.77 14.15 16 36 H 0.12 4.76 5.75 -2.91 -0.02 4.74 16 37 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 39 H 0.05 1.50 7.66 -2.39 -0.02 1.49 16 Total: -1.00 -76.76 359.17 6.23 -70.53 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.13 Total: 9.23 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 6.57 Total: -12.20 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -0.71 Total: -92.83 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.62 Total: -19.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.17 Total: 0.76 kcal Total: -76.76 6.23 -70.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002863339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.147 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds