Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35708 * 116.99693 * 2 1 4 4 C 1.39013 * 119.90250 * 180.02562 * 3 2 1 5 5 C 1.37681 * 120.08882 * 180.02562 * 4 3 2 6 6 C 1.39793 * 119.90432 * 0.25888 * 5 4 3 7 7 C 1.47471 * 120.08683 * 179.70117 * 6 5 4 8 8 O 1.21500 * 120.00367 * 359.97438 * 7 6 5 9 9 O 1.34753 * 119.99692 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00166 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46819 * 330.00508 * 10 9 7 12 12 C 1.50702 * 109.46761 * 90.00028 * 10 9 7 13 13 H 1.08004 * 119.99828 * 239.99725 * 12 10 9 14 14 C 1.37876 * 119.99902 * 60.00741 * 12 10 9 15 15 N 1.31514 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99702 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47220 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47129 * 119.99792 * 16 14 12 19 19 H 1.48497 * 109.46948 * 239.99490 * 16 14 12 20 20 C 1.50692 * 109.47440 * 210.00108 * 10 9 7 21 21 C 1.38163 * 120.02819 * 335.00288 * 20 10 9 22 22 C 1.38248 * 120.05695 * 179.97438 * 21 20 10 23 23 C 1.38288 * 120.11159 * 0.02562 * 22 21 20 24 24 C 1.38118 * 120.05560 * 0.02571 * 23 22 21 25 25 C 1.38715 * 120.02973 * 154.71925 * 20 10 9 26 26 O 1.35903 * 120.05212 * 0.02562 * 25 20 10 27 27 C 1.42897 * 116.99765 * 179.97438 * 26 25 20 28 28 C 1.39793 * 119.81874 * 359.43986 * 6 5 4 29 29 C 1.37685 * 119.90098 * 0.58482 * 28 6 5 30 30 H 1.08999 * 109.47635 * 59.99507 * 1 2 3 31 31 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47178 * 299.99329 * 1 2 3 33 33 H 1.07999 * 119.95605 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.04241 * 179.97438 * 5 4 3 35 35 H 0.97002 * 119.99771 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.97126 * 359.97126 * 21 20 10 37 37 H 1.08005 * 119.94374 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.97016 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.03194 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47118 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.46951 * 299.99362 * 27 26 25 42 42 H 1.09000 * 109.47649 * 59.99659 * 27 26 25 43 43 H 1.07998 * 120.04995 * 180.25780 * 28 6 5 44 44 H 1.07995 * 119.95044 * 179.68188 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4334 1.2797 -0.0005 5 6 4.0624 2.5044 0.0000 6 6 3.3028 3.6780 0.0065 7 6 3.9723 4.9919 0.0138 8 8 5.1857 5.0555 0.0145 9 8 3.2384 6.1220 0.0196 10 6 3.9643 7.3795 0.0271 11 1 4.9164 7.2463 0.5408 12 6 4.2164 7.8224 -1.3911 13 1 5.2287 7.9572 -1.7429 14 6 3.1549 8.0558 -2.2394 15 7 1.9224 7.8914 -1.8111 16 14 3.4674 8.6055 -3.9972 17 1 4.9301 8.7160 -4.2286 18 1 2.8909 7.6106 -4.9369 19 1 2.8297 9.9273 -4.2232 20 6 3.1494 8.4257 0.7428 21 6 1.7747 8.3048 0.8100 22 6 1.0266 9.2640 1.4669 23 6 1.6517 10.3469 2.0577 24 6 3.0256 10.4729 1.9924 25 6 3.7793 9.5079 1.3397 26 8 5.1318 9.6263 1.2794 27 6 5.7122 10.7666 1.9158 28 6 1.9069 3.6026 0.0007 29 6 1.2859 2.3737 0.0007 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 4.0194 0.3725 -0.0014 34 1 5.1410 2.5583 0.0000 35 1 1.1756 8.0552 -2.4081 36 1 1.2842 7.4603 0.3490 37 1 -0.0479 9.1675 1.5187 38 1 1.0650 11.0951 2.5699 39 1 3.5133 11.3189 2.4536 40 1 6.7949 10.7394 1.7929 41 1 5.3181 11.6758 1.4618 42 1 5.4663 10.7546 2.9776 43 1 1.3165 4.5069 0.0015 44 1 0.2076 2.3146 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003149502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -98.762373 kcal Electronic energy + Delta-G solvation = -29675.315786 eV Core-core repulsion = 25524.109371 eV Total energy + Delta-G solvation = -4151.206415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.16168 -39.46391 -38.84748 -37.07862 -36.50554 -35.14771 -32.91039 -31.13992 -30.69577 -30.12467 -29.21803 -27.62741 -27.07675 -26.45977 -23.82232 -22.89390 -22.33949 -21.24372 -20.54288 -19.74822 -18.19504 -17.42145 -16.99889 -16.49743 -16.16273 -15.83681 -15.51770 -15.22519 -15.04500 -14.81984 -14.59308 -14.35349 -14.25720 -13.61219 -13.45221 -13.34870 -12.98892 -12.82098 -12.73259 -12.40307 -12.25656 -11.95260 -11.78202 -11.47718 -11.30101 -11.13474 -11.00290 -10.88292 -10.71944 -10.71620 -10.38902 -10.26095 -10.11990 -9.46153 -9.39183 -8.92266 -8.87940 -8.72126 -8.13012 -7.76858 -7.20740 -6.09217 -4.29785 1.15735 1.51078 2.35446 2.41010 3.17226 3.22857 3.31486 3.32284 3.38010 3.88961 4.04318 4.24239 4.33883 4.79834 4.81104 4.93339 5.01493 5.06553 5.17043 5.30528 5.42543 5.44528 5.51526 5.56846 5.58457 5.64046 5.71180 5.83084 5.93520 6.00324 6.14106 6.29205 6.35473 6.42259 6.57235 6.73737 6.75094 6.77826 6.85526 7.01237 7.27596 7.33534 7.41097 7.56680 7.73208 7.89677 7.97316 8.04966 8.28022 8.71719 9.07410 9.42328 10.85012 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.003519 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.372838 B = 7955.648625 C = 8469.331055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.145 3.855 4 C -0.168 4.168 5 C -0.024 4.024 6 C -0.146 4.146 7 C 0.503 3.497 8 O -0.528 6.528 9 O -0.333 6.333 10 C 0.254 3.746 11 H 0.054 0.946 12 C -0.522 4.522 13 H 0.068 0.932 14 C 0.081 3.919 15 N -0.851 5.851 16 Si 0.893 3.107 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.061 4.061 21 C -0.012 4.012 22 C -0.177 4.177 23 C -0.107 4.107 24 C -0.228 4.228 25 C 0.121 3.879 26 O -0.307 6.307 27 C 0.031 3.969 28 C -0.018 4.018 29 C -0.224 4.224 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.263 0.737 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.146 0.854 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -6.656 6.561 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.099 3.901 4 C -0.187 4.187 5 C -0.043 4.043 6 C -0.147 4.147 7 C 0.348 3.652 8 O -0.421 6.421 9 O -0.248 6.248 10 C 0.202 3.798 11 H 0.072 0.928 12 C -0.558 4.558 13 H 0.087 0.913 14 C -0.126 4.126 15 N -0.486 5.486 16 Si 0.720 3.280 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.062 4.062 21 C -0.031 4.031 22 C -0.196 4.196 23 C -0.126 4.126 24 C -0.247 4.247 25 C 0.076 3.924 26 O -0.220 6.220 27 C -0.064 4.064 28 C -0.036 4.036 29 C -0.243 4.243 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.164 0.836 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.973 -6.878 6.413 10.209 hybrid contribution -0.252 1.031 -1.054 1.496 sum -4.225 -5.847 5.359 8.986 Atomic orbital electron populations 1.23077 0.78334 1.03784 1.01721 1.86007 1.21508 1.27234 1.88325 1.19301 0.92415 0.84040 0.94345 1.20277 0.91125 0.98391 1.08888 1.21095 1.00677 0.89937 0.92555 1.19457 0.93796 0.91889 1.09597 1.20735 0.85679 0.85578 0.73187 1.90715 1.15310 1.88424 1.47623 1.86647 1.42185 1.14964 1.81040 1.19003 0.88956 0.76230 0.95575 0.92779 1.21304 0.93568 1.46213 0.94764 0.91338 1.25039 0.95025 0.93698 0.98797 1.69935 0.98014 1.45583 1.35107 0.86520 0.78845 0.78310 0.84357 1.19465 1.20722 1.20764 1.19216 0.94246 0.95894 0.96839 1.20989 0.92129 0.98577 0.91390 1.20987 0.99068 0.96736 1.02797 1.20608 0.93602 0.97956 1.00414 1.20832 0.95055 1.00654 1.08166 1.18746 0.81801 0.95165 0.96689 1.86169 1.18547 1.44168 1.73158 1.22887 0.98648 0.88370 0.96536 1.21407 0.93712 0.97891 0.90575 1.21205 1.00163 0.92059 1.10860 0.92406 0.88373 0.92435 0.84807 0.84034 0.92697 0.83689 0.87500 0.87625 0.86943 0.89132 0.93395 0.93608 0.83599 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.83 10.48 -18.83 -0.20 -4.03 16 3 C 0.14 1.98 6.70 -39.01 -0.26 1.72 16 4 C -0.17 -2.35 9.97 -39.50 -0.39 -2.74 16 5 C -0.02 -0.39 9.58 -39.20 -0.38 -0.77 16 6 C -0.15 -2.74 5.87 -104.97 -0.62 -3.36 16 7 C 0.50 11.65 7.86 34.49 0.27 11.92 16 8 O -0.53 -13.35 15.60 -19.26 -0.30 -13.65 16 9 O -0.33 -8.20 7.36 -40.64 -0.30 -8.50 16 10 C 0.25 6.62 2.10 -29.04 -0.06 6.56 16 11 H 0.05 1.48 6.70 -51.93 -0.35 1.13 16 12 C -0.52 -14.54 8.91 -34.44 -0.31 -14.84 16 13 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 14 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 15 N -0.85 -22.27 9.49 55.43 0.53 -21.74 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.06 -1.47 4.66 -104.48 -0.49 -1.95 16 21 C -0.01 -0.27 7.46 -39.61 -0.30 -0.57 16 22 C -0.18 -3.46 10.04 -39.56 -0.40 -3.86 16 23 C -0.11 -1.96 10.04 -39.61 -0.40 -2.36 16 24 C -0.23 -4.34 9.04 -39.43 -0.36 -4.70 16 25 C 0.12 2.67 6.66 -39.21 -0.26 2.41 16 26 O -0.31 -6.50 9.63 -19.44 -0.19 -6.69 16 27 C 0.03 0.47 9.81 101.05 0.99 1.46 16 28 C -0.02 -0.29 9.61 -39.20 -0.38 -0.67 16 29 C -0.22 -3.08 9.01 -39.50 -0.36 -3.44 16 30 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.14 2.21 7.64 -52.49 -0.40 1.80 16 35 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.15 3.39 6.33 -52.49 -0.33 3.05 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.80 6.30 -52.49 -0.33 1.47 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 42 H 0.05 0.60 7.68 -51.93 -0.40 0.20 16 43 H 0.15 2.46 7.60 -52.49 -0.40 2.06 16 44 H 0.13 1.44 6.27 -52.49 -0.33 1.11 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -31.71 373.84 -8.02 -39.73 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.39 Total: 5.05 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.78 Total: -11.91 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.53 Total: -21.74 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.98 Total: -32.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.71 -8.02 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003149502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.032 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds