Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 117.00313 * 2 1 4 4 C 1.39013 * 119.90680 * 179.97438 * 3 2 1 5 5 C 1.37684 * 120.09403 * 180.02562 * 4 3 2 6 6 C 1.39787 * 119.90256 * 359.97438 * 5 4 3 7 7 C 1.47471 * 120.09299 * 179.97438 * 6 5 4 8 8 O 1.21506 * 119.99707 * 0.02562 * 7 6 5 9 9 O 1.34745 * 120.00303 * 180.02562 * 7 6 5 10 10 C 1.45197 * 117.00123 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47072 * 29.99503 * 10 9 7 12 12 C 1.50704 * 109.46832 * 270.00235 * 10 9 7 13 13 H 1.08002 * 119.99821 * 301.60130 * 12 10 9 14 14 C 1.37877 * 120.00266 * 121.60475 * 12 10 9 15 15 N 1.31516 * 119.99882 * 184.14524 * 14 12 10 16 16 Si 1.86804 * 119.99898 * 4.14417 * 14 12 10 17 17 H 1.48498 * 109.47139 * 84.82759 * 16 14 12 18 18 H 1.48499 * 109.46803 * 204.82672 * 16 14 12 19 19 H 1.48499 * 109.46977 * 324.82648 * 16 14 12 20 20 C 1.50693 * 109.47422 * 149.99823 * 10 9 7 21 21 C 1.38168 * 120.02586 * 25.92514 * 20 10 9 22 22 C 1.38245 * 120.05256 * 179.97438 * 21 20 10 23 23 C 1.38292 * 120.11439 * 359.97438 * 22 21 20 24 24 C 1.38119 * 120.05382 * 359.97438 * 23 22 21 25 25 C 1.38714 * 120.03126 * 205.89688 * 20 10 9 26 26 O 1.35897 * 120.05049 * 0.02562 * 25 20 10 27 27 C 1.42902 * 116.99710 * 180.02562 * 26 25 20 28 28 C 1.39796 * 119.81968 * 0.25545 * 6 5 4 29 29 C 1.37685 * 119.90224 * 359.50801 * 28 6 5 30 30 H 1.08999 * 109.47790 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47260 * 299.99928 * 1 2 3 32 32 H 1.09003 * 109.46795 * 59.99368 * 1 2 3 33 33 H 1.08002 * 119.95468 * 0.02571 * 4 3 2 34 34 H 1.07992 * 120.04546 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99624 * 180.02562 * 15 14 12 36 36 H 1.07994 * 119.97473 * 359.95049 * 21 20 10 37 37 H 1.08001 * 119.94033 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.97000 * 180.28215 * 23 22 21 39 39 H 1.07997 * 120.02401 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.47297 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.47566 * 299.99915 * 27 26 25 42 42 H 1.08995 * 109.47044 * 60.00058 * 27 26 25 43 43 H 1.08001 * 120.05337 * 179.72499 * 28 6 5 44 44 H 1.07999 * 119.95098 * 180.21613 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4335 1.2794 0.0005 5 6 4.0626 2.5041 0.0011 6 6 3.3032 3.6777 0.0005 7 6 3.9727 4.9917 0.0017 8 8 5.1861 5.0552 0.0026 9 8 3.2389 6.1218 0.0017 10 6 3.9649 7.3792 0.0022 11 1 4.9175 7.2489 -0.5112 12 6 4.2156 7.8138 1.4233 13 1 3.3843 7.9676 2.0955 14 6 5.5060 8.0151 1.8653 15 7 5.7300 8.3148 3.1261 16 14 6.9361 7.8621 0.6732 17 1 7.1267 9.1510 -0.0392 18 1 8.1720 7.5239 1.4238 19 1 6.6463 6.7898 -0.3124 20 6 3.1509 8.4297 -0.7082 21 6 1.7746 8.3192 -0.7611 22 6 1.0272 9.2828 -1.4123 23 6 1.6545 10.3597 -2.0117 24 6 3.0300 10.4752 -1.9607 25 6 3.7825 9.5086 -1.3091 26 8 5.1360 9.6194 -1.2584 27 6 5.7181 10.7568 -1.8984 28 6 1.9073 3.6024 0.0049 29 6 1.2861 2.3736 -0.0006 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 4.0194 0.3722 0.0005 34 1 5.1412 2.5579 0.0019 35 1 6.6378 8.4568 3.4369 36 1 1.2824 7.4792 -0.2937 37 1 -0.0484 9.1949 -1.4522 38 1 1.0681 11.1136 -2.5159 39 1 3.5194 11.3161 -2.4294 40 1 6.8017 10.7231 -1.7840 41 1 5.4647 10.7465 -2.9585 42 1 5.3323 11.6679 -1.4414 43 1 1.3168 4.5067 0.0089 44 1 0.2077 2.3146 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003149503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -94.615860 kcal Electronic energy + Delta-G solvation = -29605.765153 eV Core-core repulsion = 25454.738544 eV Total energy + Delta-G solvation = -4151.026609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.29373 -39.76794 -39.06230 -37.23265 -36.78459 -35.35251 -32.90648 -31.47255 -31.09244 -30.28486 -29.59364 -27.81169 -27.34500 -26.70962 -23.87256 -22.95305 -22.46676 -21.61254 -20.73728 -19.65919 -18.32178 -17.65582 -17.39946 -16.88730 -16.42048 -15.92729 -15.82297 -15.50679 -15.24403 -15.03182 -14.73416 -14.57365 -14.05398 -13.79658 -13.70641 -13.48780 -13.19809 -13.11349 -12.70545 -12.58901 -12.42225 -12.28680 -12.01401 -11.71785 -11.64517 -11.36701 -11.10102 -10.91586 -10.77712 -10.70708 -10.61201 -10.41374 -9.95102 -9.59723 -9.20234 -9.13760 -9.04594 -8.66827 -8.25722 -8.17179 -7.48790 -6.18840 -4.27710 1.02915 1.38351 1.91000 2.00547 3.07915 3.17679 3.38665 3.47376 3.60715 3.71337 3.96040 4.09769 4.35405 4.51762 4.69835 4.81720 4.93174 4.95402 5.17036 5.19760 5.23374 5.28924 5.33878 5.40867 5.43254 5.49088 5.52716 5.60786 5.70043 5.80304 5.95550 6.01608 6.08782 6.20543 6.26110 6.34465 6.49742 6.56744 6.62801 6.65858 6.89797 7.03405 7.08161 7.23320 7.35398 7.43663 7.66611 7.98196 8.32768 8.76458 8.88919 9.43272 10.89905 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.003664 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.612914 B = 7640.498327 C = 9079.697353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.147 3.853 4 C -0.165 4.165 5 C -0.022 4.022 6 C -0.147 4.147 7 C 0.505 3.495 8 O -0.507 6.507 9 O -0.364 6.364 10 C 0.215 3.785 11 H 0.074 0.926 12 C -0.521 4.521 13 H 0.079 0.921 14 C 0.095 3.905 15 N -0.878 5.878 16 Si 0.871 3.129 17 H -0.262 1.262 18 H -0.297 1.297 19 H -0.232 1.232 20 C -0.067 4.067 21 C -0.076 4.076 22 C -0.160 4.160 23 C -0.105 4.105 24 C -0.210 4.210 25 C 0.128 3.872 26 O -0.300 6.300 27 C 0.028 3.972 28 C -0.023 4.023 29 C -0.224 4.224 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.142 0.858 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -7.210 -10.584 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.184 4.184 5 C -0.040 4.040 6 C -0.148 4.148 7 C 0.350 3.650 8 O -0.397 6.397 9 O -0.281 6.281 10 C 0.163 3.837 11 H 0.092 0.908 12 C -0.557 4.557 13 H 0.097 0.903 14 C -0.112 4.112 15 N -0.514 5.514 16 Si 0.698 3.302 17 H -0.187 1.187 18 H -0.224 1.224 19 H -0.156 1.156 20 C -0.068 4.068 21 C -0.094 4.094 22 C -0.179 4.179 23 C -0.123 4.123 24 C -0.229 4.229 25 C 0.083 3.917 26 O -0.213 6.213 27 C -0.068 4.068 28 C -0.041 4.041 29 C -0.242 4.242 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.160 0.840 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.791 -7.407 -10.353 15.470 hybrid contribution 0.513 0.594 -0.347 0.858 sum -8.278 -6.813 -10.700 15.147 Atomic orbital electron populations 1.23090 0.78251 1.03909 1.01690 1.86017 1.21569 1.27143 1.88212 1.19303 0.92417 0.84088 0.94078 1.20311 0.91159 0.98460 1.08469 1.21119 1.00840 0.89869 0.92168 1.19429 0.93770 0.91733 1.09896 1.20716 0.85922 0.85021 0.73383 1.90833 1.14914 1.87985 1.46016 1.86482 1.43466 1.15669 1.82444 1.19708 0.90667 0.76261 0.97056 0.90813 1.20953 0.94392 1.46824 0.93536 0.90260 1.25059 0.99031 0.92074 0.95016 1.69914 1.21821 1.44885 1.14766 0.86902 0.80474 0.80461 0.82316 1.18742 1.22448 1.15578 1.19445 0.93943 0.96193 0.97247 1.20807 0.92380 0.98634 0.97601 1.20946 0.99268 0.95928 1.01735 1.20699 0.93621 0.97986 1.00032 1.21021 0.95060 1.00413 1.06408 1.18731 0.82594 0.94625 0.95749 1.86301 1.17687 1.44561 1.72799 1.22938 0.99210 0.88246 0.96368 1.21316 0.93557 0.97769 0.91444 1.21192 1.00186 0.92027 1.10833 0.88281 0.92357 0.92442 0.84628 0.83858 0.92212 0.85283 0.86710 0.86778 0.86133 0.88917 0.93237 0.92883 0.84013 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.55 10.48 -18.78 -0.20 -3.75 16 3 C 0.15 1.87 6.70 -39.01 -0.26 1.61 16 4 C -0.17 -2.19 9.97 -39.50 -0.39 -2.59 16 5 C -0.02 -0.34 9.59 -39.21 -0.38 -0.71 16 6 C -0.15 -2.60 5.87 -104.97 -0.62 -3.22 16 7 C 0.51 11.32 7.86 34.49 0.27 11.60 16 8 O -0.51 -12.84 13.51 -19.27 -0.26 -13.10 16 9 O -0.36 -8.40 7.97 -40.61 -0.32 -8.73 16 10 C 0.21 5.43 1.89 -29.04 -0.05 5.37 16 11 H 0.07 1.98 3.25 -51.93 -0.17 1.81 16 12 C -0.52 -15.15 9.20 -34.44 -0.32 -15.47 16 13 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 14 C 0.10 2.83 5.47 -17.82 -0.10 2.73 16 15 N -0.88 -27.21 13.96 55.43 0.77 -26.43 16 16 Si 0.87 22.92 24.73 -169.99 -4.20 18.71 16 17 H -0.26 -6.38 6.01 56.52 0.34 -6.04 16 18 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 19 H -0.23 -6.20 4.85 56.52 0.27 -5.93 16 20 C -0.07 -1.50 5.06 -104.48 -0.53 -2.03 16 21 C -0.08 -1.46 9.35 -39.60 -0.37 -1.83 16 22 C -0.16 -2.58 10.04 -39.56 -0.40 -2.98 16 23 C -0.11 -1.62 10.04 -39.60 -0.40 -2.02 16 24 C -0.21 -3.57 9.04 -39.44 -0.36 -3.92 16 25 C 0.13 2.66 6.66 -39.22 -0.26 2.40 16 26 O -0.30 -6.36 6.68 -19.42 -0.13 -6.49 16 27 C 0.03 0.43 9.66 101.05 0.98 1.40 16 28 C -0.02 -0.33 9.61 -39.20 -0.38 -0.71 16 29 C -0.22 -2.76 9.01 -39.50 -0.36 -3.12 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.20 7.64 -52.49 -0.40 1.80 16 35 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.13 2.34 7.36 -52.49 -0.39 1.95 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 39 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 40 H 0.09 1.32 8.04 -51.93 -0.42 0.91 16 41 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 42 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 43 H 0.14 1.98 7.60 -52.49 -0.40 1.58 16 44 H 0.13 1.24 6.28 -52.49 -0.33 0.91 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -35.26 365.90 -7.21 -42.47 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.46 Total: 4.11 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.92 Total: -12.31 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.91 Total: -32.07 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.20 Total: 18.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.26 -7.21 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003149503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.141 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds