Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34958 * 125.63945 * 2 1 4 4 C 1.35484 * 108.98624 * 180.02562 * 3 2 1 5 5 C 1.39798 * 107.84352 * 359.78008 * 4 3 2 6 6 C 1.37704 * 125.63199 * 180.02562 * 2 1 3 7 7 C 1.46490 * 126.26131 * 359.93462 * 6 2 1 8 8 O 1.21621 * 119.99642 * 179.97438 * 7 6 2 9 9 O 1.34889 * 120.00206 * 359.97438 * 7 6 2 10 10 C 1.45200 * 116.99743 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00213 * 354.72449 * 11 10 9 13 13 N 1.34776 * 119.99633 * 174.72520 * 11 10 9 14 14 C 1.46503 * 119.99742 * 184.42772 * 13 11 10 15 15 C 1.50701 * 109.47083 * 270.00200 * 14 13 11 16 16 H 1.07997 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99888 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99750 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99871 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47429 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46867 * 119.99904 * 19 17 15 22 22 H 1.48496 * 109.47054 * 239.99747 * 19 17 15 23 23 C 1.39923 * 120.00351 * 4.42966 * 13 11 10 24 24 C 1.38881 * 120.06932 * 66.70742 * 23 13 11 25 25 C 1.38111 * 119.92888 * 179.97438 * 24 23 13 26 26 C 1.38285 * 120.06987 * 359.97438 * 25 24 23 27 27 C 1.38286 * 120.14228 * 0.04807 * 26 25 24 28 28 C 1.38115 * 120.06889 * 359.95147 * 27 26 25 29 29 H 1.08991 * 109.47089 * 269.95917 * 1 2 3 30 30 H 1.09002 * 109.46665 * 29.95731 * 1 2 3 31 31 H 1.08999 * 109.47240 * 149.95119 * 1 2 3 32 32 H 1.08000 * 125.50664 * 0.02562 * 3 2 1 33 33 H 1.08003 * 126.07833 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.51998 * 180.22826 * 5 4 3 35 35 H 1.08998 * 109.47229 * 60.00524 * 10 9 7 36 36 H 1.08998 * 109.47256 * 299.99986 * 10 9 7 37 37 H 1.08994 * 109.47285 * 30.00400 * 14 13 11 38 38 H 1.09001 * 109.46840 * 150.00339 * 14 13 11 39 39 H 0.97002 * 119.99581 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.03282 * 359.70206 * 24 23 13 41 41 H 1.07991 * 119.96563 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.93060 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.96368 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.02927 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0968 0.0000 4 6 3.5494 0.7085 -0.0006 5 6 3.5785 -0.6891 0.0042 6 6 2.2673 -1.1192 -0.0005 7 6 1.8120 -2.5116 0.0002 8 8 2.6242 -3.4169 -0.0008 9 8 0.4921 -2.7896 0.0020 10 6 0.1138 -4.1915 0.0032 11 6 -1.3889 -4.3062 0.0045 12 8 -2.0731 -3.3095 0.1011 13 7 -1.9724 -5.5165 -0.1015 14 6 -3.4305 -5.6207 -0.1979 15 6 -4.0183 -5.7382 1.1847 16 1 -3.3706 -5.7350 2.0489 17 6 -5.3830 -5.8496 1.3465 18 7 -6.1718 -5.8530 0.2942 19 14 -6.1115 -5.9959 3.0603 20 1 -5.0197 -5.9667 4.0665 21 1 -7.0380 -4.8610 3.3029 22 1 -6.8561 -7.2757 3.1741 23 6 -1.1856 -6.6734 -0.1195 24 6 -0.4706 -7.0463 1.0113 25 6 0.3046 -8.1891 0.9905 26 6 0.3690 -8.9620 -0.1544 27 6 -0.3413 -8.5931 -1.2821 28 6 -1.1184 -7.4514 -1.2677 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8895 -0.5146 32 1 1.9024 2.1189 0.0004 33 1 4.4089 1.3625 -0.0011 34 1 4.4596 -1.3137 0.0085 35 1 0.5162 -4.6757 0.8930 36 1 0.5140 -4.6766 -0.8870 37 1 -3.8269 -4.7309 -0.6869 38 1 -3.6939 -6.5033 -0.7809 39 1 -7.1319 -5.9318 0.4080 40 1 -0.5174 -6.4409 1.9044 41 1 0.8611 -8.4794 1.8693 42 1 0.9764 -9.8550 -0.1683 43 1 -0.2886 -9.1986 -2.1748 44 1 -1.6733 -7.1642 -2.1487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003296473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -28.628684 kcal Electronic energy + Delta-G solvation = -29331.056473 eV Core-core repulsion = 25215.184033 eV Total energy + Delta-G solvation = -4115.872439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59541 -40.31345 -39.57808 -38.14529 -36.35964 -34.94303 -33.02078 -32.79088 -30.81760 -30.19358 -29.50212 -28.79140 -26.69024 -26.59388 -23.71425 -22.85226 -22.46695 -22.07443 -20.79127 -19.94113 -19.22577 -18.08406 -17.40073 -16.86985 -16.75892 -16.50010 -16.03768 -15.58527 -15.41937 -15.17830 -14.91180 -14.36503 -14.29305 -13.96633 -13.69021 -13.56042 -13.21470 -13.05736 -12.89304 -12.69255 -12.54521 -12.40503 -12.35006 -12.19128 -12.03190 -11.55455 -11.28632 -11.13342 -10.89588 -10.78709 -10.72364 -10.71892 -10.24664 -9.81598 -9.48443 -8.93926 -8.75092 -8.69406 -8.51861 -8.50223 -7.80710 -6.13647 -4.18144 1.12964 1.47865 1.58537 2.32778 2.50631 2.68117 3.00420 3.07391 3.25286 3.32746 3.37098 3.69851 3.95802 4.37876 4.57948 4.70127 4.74528 4.83870 5.09554 5.13040 5.15938 5.21110 5.22051 5.23593 5.27578 5.30565 5.32532 5.61443 5.69656 5.75548 5.89740 5.90678 5.96634 6.19554 6.26680 6.52379 6.54048 6.67567 6.69549 6.76571 6.85661 6.99332 7.11046 7.21343 7.32803 7.68340 7.81592 8.08416 8.13628 8.64642 8.85872 9.46588 10.94839 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.003454 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.156702 B = 8103.769774 C =10138.906403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.412 5.412 3 C 0.029 3.971 4 C -0.218 4.218 5 C -0.100 4.100 6 C -0.047 4.047 7 C 0.536 3.464 8 O -0.501 6.501 9 O -0.335 6.335 10 C 0.051 3.949 11 C 0.516 3.484 12 O -0.506 6.506 13 N -0.554 5.554 14 C 0.250 3.750 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.152 3.848 24 C -0.126 4.126 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.108 4.108 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.162 5.674 -2.683 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.086 5.086 3 C -0.108 4.108 4 C -0.242 4.242 5 C -0.126 4.126 6 C -0.157 4.157 7 C 0.381 3.619 8 O -0.389 6.389 9 O -0.250 6.250 10 C -0.026 4.026 11 C 0.302 3.698 12 O -0.380 6.380 13 N -0.283 5.283 14 C 0.133 3.867 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.060 3.940 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.127 4.127 28 C -0.142 4.142 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.326 5.894 -2.691 17.564 hybrid contribution -0.627 -0.353 1.018 1.247 sum 15.699 5.541 -1.673 16.732 Atomic orbital electron populations 1.22445 0.74939 1.05828 1.04834 1.44091 1.07428 1.05252 1.51812 1.22004 0.90827 0.91830 1.06173 1.20858 0.96162 0.94694 1.12481 1.21321 0.94023 0.95078 1.02159 1.19400 0.90837 0.83828 1.21639 1.19860 0.80675 0.88101 0.73243 1.90895 1.54873 1.46335 1.46842 1.86624 1.25293 1.28926 1.84201 1.22924 0.95060 0.79696 1.04898 1.19721 0.88005 0.83972 0.78117 1.90706 1.64604 1.35513 1.47217 1.45878 1.09420 1.02246 1.70789 1.19501 0.70229 0.98765 0.98172 1.21378 0.92020 1.50806 0.92313 0.92252 1.24906 0.96800 0.94934 0.97293 1.69930 1.04318 1.50020 1.28968 0.86412 0.79129 0.77673 0.84067 1.19749 1.20798 1.20866 1.17785 0.93451 0.89471 0.93253 1.21372 0.98326 0.97717 0.97172 1.20984 0.98745 0.94598 0.98228 1.21099 1.00378 0.99923 0.93506 1.20991 0.96915 0.96326 0.98466 1.21302 0.99541 0.95837 0.97527 0.89844 0.89486 0.87309 0.81158 0.83622 0.83195 0.88237 0.88513 0.93350 0.94287 0.92639 0.85902 0.85944 0.86203 0.85917 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.56 59.85 0.63 1.28 16 2 N -0.41 -4.84 3.15 -120.41 -0.38 -5.22 16 3 C 0.03 0.27 11.35 -17.16 -0.19 0.08 16 4 C -0.22 -2.10 10.81 -39.98 -0.43 -2.53 16 5 C -0.10 -1.18 10.66 -39.09 -0.42 -1.60 16 6 C -0.05 -0.64 6.89 -81.99 -0.56 -1.21 16 7 C 0.54 8.44 7.92 34.05 0.27 8.71 16 8 O -0.50 -8.60 16.68 -19.36 -0.32 -8.93 16 9 O -0.33 -5.55 7.19 -47.68 -0.34 -5.89 16 10 C 0.05 0.86 4.62 36.01 0.17 1.02 16 11 C 0.52 10.60 7.62 -10.98 -0.08 10.52 16 12 O -0.51 -12.10 16.13 -14.04 -0.23 -12.33 16 13 N -0.55 -11.64 2.51 -114.73 -0.29 -11.93 16 14 C 0.25 6.36 5.07 -5.19 -0.03 6.33 16 15 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 2.72 4.43 -83.69 -0.37 2.35 16 24 C -0.13 -2.03 8.45 -39.39 -0.33 -2.36 16 25 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 26 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 27 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 28 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.45 6.15 -51.93 -0.32 1.13 16 32 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.10 1.56 6.96 -51.93 -0.36 1.20 16 36 H 0.10 1.49 8.02 -51.93 -0.42 1.07 16 37 H 0.05 1.35 7.49 -51.93 -0.39 0.97 16 38 H 0.04 1.01 7.82 -51.93 -0.41 0.60 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 1.97 7.89 -52.49 -0.41 1.56 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -33.71 385.93 -9.03 -42.74 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.66 Total: 2.97 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.35 Total: 1.37 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.07 Total: -42.36 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.89 Total: -27.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.71 -9.03 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003296473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.111 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds