Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99358 * 3 2 1 5 5 H 1.48499 * 109.46916 * 29.99356 * 3 2 1 6 6 H 1.48493 * 109.47173 * 149.99431 * 3 2 1 7 7 C 1.37884 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99231 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00318 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.34258 * 125.14667 * 125.32832 * 10 9 7 12 12 C 1.38259 * 107.82801 * 180.12745 * 11 10 9 13 13 C 1.46738 * 126.83814 * 179.83531 * 12 11 10 14 14 C 1.35256 * 119.99880 * 359.68391 * 13 12 11 15 15 C 1.41539 * 119.99935 * 179.72107 * 14 13 12 16 16 O 1.21673 * 119.99975 * 0.28379 * 15 14 13 17 17 O 1.34952 * 119.99928 * 180.27555 * 15 14 13 18 18 C 1.46740 * 106.32496 * 359.57638 * 12 11 10 19 19 C 1.48244 * 126.50816 * 180.22337 * 18 12 11 20 20 C 1.39427 * 120.13137 * 325.00143 * 19 18 12 21 21 C 1.37981 * 119.87034 * 179.97438 * 20 19 18 22 22 C 1.38351 * 120.12830 * 359.97438 * 21 20 19 23 23 C 1.38309 * 120.26043 * 0.02562 * 22 21 20 24 24 N 1.48017 * 119.93574 * 180.02562 * 23 22 21 25 25 O 1.21794 * 120.00226 * 0.02562 * 24 23 22 26 26 O 1.21803 * 119.99837 * 180.02562 * 24 23 22 27 27 C 1.38020 * 120.12404 * 359.75606 * 23 22 21 28 28 N 1.31365 * 106.98031 * 0.26242 * 18 12 11 29 29 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47411 * 59.99634 * 9 7 2 31 31 H 1.09010 * 109.46349 * 299.99739 * 9 7 2 32 32 H 1.07997 * 126.08679 * 359.96578 * 11 10 9 33 33 H 1.08001 * 120.00334 * 179.69203 * 13 12 11 34 34 H 1.08002 * 120.00316 * 0.02562 * 14 13 12 35 35 H 0.96701 * 113.99780 * 180.02562 * 17 15 14 36 36 H 1.07993 * 120.06226 * 359.97438 * 20 19 18 37 37 H 1.08001 * 119.93350 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.87022 * 180.02562 * 22 21 20 39 39 H 1.08009 * 120.06520 * 180.25658 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.8563 -3.0922 -0.8944 12 6 5.0695 -4.4168 -0.5606 13 6 5.9313 -5.3737 -1.2640 14 6 6.6132 -4.9865 -2.3661 15 6 7.4491 -5.9078 -3.0412 16 8 7.5502 -7.0496 -2.6332 17 8 8.1337 -5.5198 -4.1375 18 6 4.2673 -4.6736 0.6410 19 6 4.1710 -5.9551 1.3799 20 6 4.2158 -7.1659 0.6900 21 6 4.1262 -8.3556 1.3832 22 6 3.9927 -8.3485 2.7603 23 6 3.9476 -7.1506 3.4500 24 7 3.8052 -7.1515 4.9233 25 8 3.7282 -8.2064 5.5271 26 8 3.7649 -6.0971 5.5319 27 6 4.0409 -5.9545 2.7677 28 7 3.6501 -3.5524 0.9370 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6800 0.8911 31 1 3.8751 -0.6805 -0.8890 32 1 5.2979 -2.5675 -1.7287 33 1 6.0211 -6.3873 -0.9019 34 1 6.5237 -3.9729 -2.7281 35 1 8.6766 -6.2175 -4.5295 36 1 4.3204 -7.1725 -0.3848 37 1 4.1604 -9.2940 0.8498 38 1 3.9233 -9.2822 3.2987 39 1 4.0097 -5.0196 3.3078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003355981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = 21.357774 kcal Electronic energy + Delta-G solvation = -27938.849729 eV Core-core repulsion = 23623.885859 eV Total energy + Delta-G solvation = -4314.963869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.105 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.22123 -41.00488 -40.21507 -39.37614 -36.59954 -36.25669 -34.71346 -33.70530 -32.87540 -32.12171 -31.02557 -29.53234 -27.88984 -26.65438 -24.86464 -24.23236 -22.75476 -22.19465 -21.20313 -20.36766 -19.08653 -18.89864 -18.63067 -18.15401 -17.56481 -17.24757 -16.95469 -16.70271 -16.08640 -15.64000 -15.56195 -15.06781 -14.87153 -14.37802 -14.09242 -13.88241 -13.69871 -13.49190 -13.06922 -12.74561 -12.61513 -12.48570 -11.98659 -11.76594 -11.69494 -11.59545 -11.34091 -11.22347 -11.16747 -10.99959 -10.79999 -10.69868 -10.53040 -10.39199 -10.03645 -9.80648 -9.67610 -8.96840 -8.85360 -7.85058 -6.43133 -4.49200 -0.27789 0.42219 0.75719 1.22284 1.31052 2.18562 2.53016 2.70163 3.01289 3.06422 3.11393 3.14118 3.29744 3.37975 3.97739 4.04729 4.23211 4.43445 4.51217 4.56190 4.72600 4.81518 4.84947 5.04808 5.09874 5.20755 5.36080 5.41896 5.48538 5.56166 5.67693 5.84738 5.95732 6.09079 6.16630 6.20447 6.32035 6.33728 6.35504 6.54152 6.99795 7.13946 7.59056 7.81706 7.82864 8.08176 8.62510 9.09035 10.68949 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.005913 B = 0.004098 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4734.232150 B = 6831.016609 C =10984.387758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.222 3.778 10 N -0.304 5.304 11 C 0.108 3.892 12 C -0.259 4.259 13 C 0.086 3.914 14 C -0.268 4.268 15 C 0.520 3.480 16 O -0.540 6.540 17 O -0.511 6.511 18 C 0.103 3.897 19 C 0.008 3.992 20 C -0.051 4.051 21 C -0.113 4.113 22 C -0.055 4.055 23 C -0.043 4.043 24 N 0.030 4.970 25 O -0.164 6.164 26 O -0.155 6.155 27 C -0.029 4.029 28 N -0.239 5.239 29 H 0.271 0.729 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.185 0.815 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.404 0.596 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -12.948 -3.542 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.105 0.895 9 C 0.104 3.896 10 N -0.078 5.078 11 C -0.045 4.045 12 C -0.271 4.271 13 C 0.066 3.934 14 C -0.289 4.289 15 C 0.370 3.630 16 O -0.434 6.434 17 O -0.320 6.320 18 C -0.064 4.064 19 C 0.005 3.995 20 C -0.070 4.070 21 C -0.132 4.132 22 C -0.075 4.075 23 C -0.126 4.126 24 N 0.549 4.451 25 O -0.379 6.379 26 O -0.372 6.372 27 C -0.050 4.050 28 N -0.058 5.058 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.202 0.798 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.260 0.740 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.916 -11.942 -3.145 17.161 hybrid contribution 1.065 0.363 -0.543 1.250 sum 12.981 -11.579 -3.689 17.782 Atomic orbital electron populations 1.69848 1.06198 1.27697 1.47780 1.24802 0.94878 0.98837 0.93854 0.86921 0.80431 0.83801 0.79053 1.19530 1.20223 1.18844 1.20968 0.87120 0.95971 1.54319 0.89505 1.20352 0.98210 0.71962 0.99088 1.48911 1.29720 1.11514 1.17671 1.23190 0.92571 0.93718 0.95010 1.19926 1.11115 0.94193 1.01856 1.21722 0.85636 0.97083 0.89001 1.20786 1.05852 1.01132 1.01085 1.19589 0.78204 0.86908 0.78306 1.90918 1.64529 1.21470 1.66450 1.85097 1.58625 1.46118 1.42209 1.21555 0.97662 0.92360 0.94858 1.17558 1.00844 0.90487 0.90611 1.21770 0.92787 0.90878 1.01578 1.21127 1.00453 0.99156 0.92449 1.21129 0.94487 0.96969 0.94880 1.20967 1.15116 0.96748 0.79758 1.43596 0.97495 1.00466 1.03518 1.94510 1.53562 1.20720 1.69100 1.94586 1.53386 1.20605 1.68646 1.21147 0.92306 0.97775 0.93735 1.77518 1.19438 0.96026 1.12847 0.91826 0.93080 0.92743 0.79779 0.84847 0.84820 0.73991 0.83396 0.82976 0.82819 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.96 55.43 0.77 -24.13 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 18.58 27.47 -169.99 -4.67 13.92 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 7 C -0.55 -14.01 9.76 -34.44 -0.34 -14.34 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.22 4.54 5.28 -5.20 -0.03 4.51 16 10 N -0.30 -5.64 3.62 -61.93 -0.22 -5.86 16 11 C 0.11 1.55 10.79 -16.48 -0.18 1.37 16 12 C -0.26 -3.56 6.23 -103.02 -0.64 -4.20 16 13 C 0.09 0.98 8.76 -37.21 -0.33 0.66 16 14 C -0.27 -2.92 9.47 -39.39 -0.37 -3.30 16 15 C 0.52 5.90 8.05 31.99 0.26 6.16 16 16 O -0.54 -7.37 16.84 -19.40 -0.33 -7.69 16 17 O -0.51 -4.59 13.54 -41.18 -0.56 -5.15 16 18 C 0.10 1.61 6.94 -80.52 -0.56 1.05 16 19 C 0.01 0.10 5.84 -104.91 -0.61 -0.51 16 20 C -0.05 -0.50 8.68 -39.23 -0.34 -0.84 16 21 C -0.11 -0.91 10.03 -39.63 -0.40 -1.30 16 22 C -0.06 -0.52 9.55 -39.51 -0.38 -0.90 16 23 C -0.04 -0.54 6.85 -80.00 -0.55 -1.09 16 24 N 0.03 0.43 4.45 33.94 0.15 0.58 16 25 O -0.16 -2.36 18.44 -29.46 -0.54 -2.90 16 26 O -0.16 -2.50 18.44 -29.46 -0.54 -3.04 16 27 C -0.03 -0.40 9.27 -39.23 -0.36 -0.76 16 28 N -0.24 -4.60 12.27 34.60 0.42 -4.18 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.05 7.20 -51.93 -0.37 0.67 16 31 H 0.05 0.98 7.47 -51.92 -0.39 0.59 16 32 H 0.19 1.93 7.30 -52.49 -0.38 1.54 16 33 H 0.13 1.41 5.60 -52.49 -0.29 1.12 16 34 H 0.13 1.27 6.94 -52.49 -0.36 0.91 16 35 H 0.40 1.88 8.98 45.56 0.41 2.29 16 36 H 0.15 1.25 6.38 -52.49 -0.34 0.91 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.15 1.16 7.60 -52.49 -0.40 0.76 16 39 H 0.16 2.32 7.61 -52.48 -0.40 1.92 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -32.66 360.23 -7.55 -40.20 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.54 Total: 4.29 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -4.92 Total: -11.47 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 1.12 Total: -33.58 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.97 Total: -18.79 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.67 Total: 13.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.66 -7.55 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.561 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds