Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31719 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48503 * 109.47366 * 270.27663 * 3 2 1 5 5 H 1.48500 * 109.47113 * 30.27725 * 3 2 1 6 6 H 1.48499 * 109.47242 * 150.27375 * 3 2 1 7 7 C 1.38518 * 120.00230 * 180.27930 * 2 1 3 8 8 H 1.08002 * 119.99952 * 179.72810 * 7 2 1 9 9 S 1.76202 * 120.00155 * 359.71765 * 7 2 1 10 10 C 1.76194 * 100.00161 * 180.02562 * 9 7 2 11 11 N 1.31550 * 126.37542 * 0.02932 * 10 9 7 12 12 N 1.28504 * 110.10665 * 179.97438 * 11 10 9 13 13 C 1.31795 * 109.94505 * 0.02562 * 12 11 10 14 14 C 1.47006 * 126.47541 * 179.97438 * 13 12 11 15 15 C 1.36243 * 125.33691 * 16.86651 * 14 13 12 16 16 C 1.37750 * 114.42523 * 179.85544 * 15 14 13 17 17 C 1.33709 * 115.19167 * 0.43932 * 16 15 14 18 18 S 1.75825 * 109.97535 * 359.75843 * 17 16 15 19 19 N 1.36934 * 126.37190 * 179.71665 * 10 9 7 20 20 C 1.46504 * 127.17483 * 0.02562 * 19 10 9 21 21 C 1.50700 * 109.47339 * 275.17481 * 20 19 10 22 22 C 1.38238 * 119.99478 * 274.93173 * 21 20 19 23 23 C 1.38235 * 119.99288 * 179.76582 * 22 21 20 24 24 C 1.38235 * 120.00527 * 0.51392 * 23 22 21 25 25 C 1.38238 * 119.99328 * 359.74213 * 24 23 22 26 26 C 1.38229 * 120.00454 * 0.02562 * 25 24 23 27 27 H 0.97002 * 120.00500 * 359.71916 * 1 2 3 28 28 H 1.08008 * 122.78928 * 0.04057 * 15 14 13 29 29 H 1.07992 * 122.40561 * 180.19465 * 16 15 14 30 30 H 1.08007 * 125.01046 * 179.76627 * 17 16 15 31 31 H 1.09006 * 109.46911 * 35.17613 * 20 19 10 32 32 H 1.09005 * 109.47124 * 155.17265 * 20 19 10 33 33 H 1.08000 * 120.00390 * 0.02562 * 22 21 20 34 34 H 1.08008 * 119.99558 * 180.23451 * 23 22 21 35 35 H 1.07998 * 120.00519 * 179.72639 * 24 23 22 36 36 H 1.08002 * 119.99463 * 179.97438 * 25 24 23 37 37 H 1.08001 * 119.99902 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2511 1.6178 0.0000 4 1 2.4928 2.0499 -1.4001 5 1 1.4515 2.6510 0.7059 6 1 3.5516 1.4386 0.6942 7 6 2.0098 -1.1996 -0.0058 8 1 3.0898 -1.1995 -0.0103 9 16 1.1289 -2.7256 -0.0058 10 6 2.4787 -3.8581 -0.0135 11 7 3.7572 -3.5481 -0.0172 12 7 4.4708 -4.6168 -0.0220 13 6 3.6902 -5.6787 -0.0221 14 6 4.1249 -7.0830 -0.0273 15 6 5.3751 -7.5220 0.2897 16 6 5.5357 -8.8879 0.2129 17 6 4.4492 -9.5682 -0.1676 18 16 3.1148 -8.4590 -0.4512 19 7 2.3921 -5.2247 -0.0107 20 6 1.1712 -6.0343 -0.0013 21 6 0.6911 -6.2029 1.4172 22 6 1.2075 -7.2138 2.2061 23 6 0.7706 -7.3653 3.5088 24 6 -0.1904 -6.5128 4.0192 25 6 -0.7106 -5.5052 3.2285 26 6 -0.2703 -5.3506 1.9274 27 1 -0.4851 0.8400 0.0041 28 1 6.1732 -6.8547 0.5801 29 1 6.4729 -9.3742 0.4397 30 1 4.3988 -10.6408 -0.2835 31 1 0.4002 -5.5360 -0.5891 32 1 1.3810 -7.0132 -0.4326 33 1 1.9553 -7.8825 1.8061 34 1 1.1768 -8.1528 4.1264 35 1 -0.5350 -6.6339 5.0356 36 1 -1.4617 -4.8394 3.6271 37 1 -0.6770 -4.5637 1.3096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003587171.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = 132.450984 kcal Electronic energy + Delta-G solvation = -24087.848917 eV Core-core repulsion = 20663.208153 eV Total energy + Delta-G solvation = -3424.640764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 343.051 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -42.00848 -39.16531 -37.63021 -34.98738 -32.70394 -31.54687 -31.08965 -30.81997 -28.14846 -26.59087 -25.74487 -24.43299 -22.73000 -22.18797 -21.57577 -21.08506 -18.90697 -18.14574 -17.80231 -16.89389 -16.15250 -15.87394 -15.50655 -15.23386 -14.99118 -14.96516 -14.85392 -13.81796 -13.45342 -13.25160 -13.11384 -12.97118 -12.78686 -12.61749 -12.51783 -12.09359 -11.51821 -11.39002 -11.17987 -11.13246 -11.05018 -10.82767 -10.74807 -10.24942 -10.06711 -9.85936 -9.75115 -9.24208 -8.95030 -8.84720 -8.79443 -8.59594 -8.29748 -6.78083 -6.51779 -4.26058 0.58623 1.22079 1.36507 1.47871 1.79007 2.25013 2.38718 2.84653 3.17984 3.18724 3.22420 3.31562 3.61737 3.89110 3.97830 4.50470 4.60748 4.66185 4.92863 4.95091 4.96739 5.02730 5.07614 5.20389 5.23447 5.35659 5.53205 5.56355 5.65655 5.77018 5.97413 6.03569 6.09920 6.22634 6.25574 6.41575 6.47448 6.55444 6.57927 6.66536 7.02729 7.21551 7.53241 8.33087 9.00910 9.33767 10.56311 Molecular weight = 343.05amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.004205 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.345142 B = 6657.404735 C = 8384.965887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.106 0.894 9 S 0.147 5.853 10 C 0.182 3.818 11 N -0.302 5.302 12 N -0.257 5.257 13 C 0.195 3.805 14 C -0.090 4.090 15 C -0.107 4.107 16 C -0.125 4.125 17 C -0.225 4.225 18 S 0.113 5.887 19 N -0.472 5.472 20 C 0.154 3.846 21 C -0.116 4.116 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.082 4.082 27 H 0.274 0.726 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -19.157 3.163 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.682 4.682 8 H 0.124 0.876 9 S 0.380 5.620 10 C -0.188 4.188 11 N -0.148 5.148 12 N -0.100 5.100 13 C -0.072 4.072 14 C -0.210 4.210 15 C -0.141 4.141 16 C -0.155 4.155 17 C -0.361 4.361 18 S 0.376 5.624 19 N -0.170 5.170 20 C 0.030 3.970 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.146 4.146 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.101 4.101 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.183 0.817 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.920 -18.472 2.675 18.763 hybrid contribution 2.116 0.508 0.443 2.220 sum 0.196 -17.964 3.118 18.234 Atomic orbital electron populations 1.69968 1.05992 1.28510 1.46846 1.25039 0.95212 0.99617 0.93356 0.85922 0.79661 0.79936 0.78765 1.19873 1.20638 1.18967 1.23219 0.97309 0.89086 1.58568 0.87626 1.83281 0.97667 0.95452 1.85571 1.28438 1.02275 0.85220 1.02828 1.74782 0.98947 1.18257 1.22806 1.74395 1.26230 0.93958 1.15437 1.21368 0.81169 0.93043 1.11611 1.21607 0.97795 0.91436 1.10138 1.20606 0.96207 0.95365 1.01905 1.20024 0.99595 0.93266 1.02608 1.25833 0.96811 1.03316 1.10119 1.84059 1.14424 0.96391 1.67557 1.46422 1.06000 1.05837 1.58694 1.20723 0.85567 0.95521 0.95151 1.19864 0.98722 0.97564 0.95576 1.21184 0.98906 0.97594 0.94266 1.21067 0.98116 1.00005 0.95369 1.21207 0.96808 0.95332 0.99596 1.21184 1.00451 0.98097 0.94030 1.21292 0.95503 0.97192 0.96088 0.91590 0.83188 0.83864 0.81719 0.87272 0.88907 0.86025 0.86141 0.86110 0.85570 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.93 13.22 55.48 0.73 -23.19 16 2 C 0.08 2.06 5.49 -17.50 -0.10 1.97 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -14.75 9.36 30.84 0.29 -14.46 16 8 H 0.11 3.04 6.92 -52.49 -0.36 2.68 16 9 S 0.15 3.55 21.03 -107.50 -2.26 1.29 16 10 C 0.18 4.25 8.06 -87.74 -0.71 3.54 16 11 N -0.30 -7.66 11.02 30.80 0.34 -7.33 16 12 N -0.26 -5.92 12.22 32.47 0.40 -5.53 16 13 C 0.19 3.82 7.87 -153.75 -1.21 2.61 16 14 C -0.09 -1.39 6.39 -36.75 -0.23 -1.62 16 15 C -0.11 -1.45 10.15 -40.48 -0.41 -1.86 16 16 C -0.12 -1.29 10.15 -41.35 -0.42 -1.71 16 17 C -0.22 -2.15 11.21 29.14 0.33 -1.82 16 18 S 0.11 1.31 18.45 -107.50 -1.98 -0.68 16 19 N -0.47 -9.17 2.83 -115.41 -0.33 -9.50 16 20 C 0.15 2.35 5.90 -5.19 -0.03 2.31 16 21 C -0.12 -1.72 5.46 -104.62 -0.57 -2.29 16 22 C -0.10 -1.36 9.72 -39.58 -0.38 -1.75 16 23 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 24 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.08 -1.23 9.68 -39.59 -0.38 -1.61 16 27 H 0.27 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.11 1.57 7.93 -51.93 -0.41 1.16 16 32 H 0.09 1.21 4.84 -41.49 -0.20 1.01 16 33 H 0.12 1.54 6.21 -52.49 -0.33 1.21 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 2.08 7.57 -52.49 -0.40 1.68 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.94 349.38 -11.26 -43.20 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.37 Total: 2.70 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -5.03 Total: -22.34 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.14 Total: -45.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -4.24 Total: 0.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.94 -11.26 -43.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003587171.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.650 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds