Wall clock time and date at job start Tue Mar 31 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86803 * 120.00235 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00127 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00144 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99974 * 3 2 1 7 7 C 1.38885 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99723 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00390 * 179.72219 * 7 2 1 10 10 C 1.76195 * 100.00139 * 180.02562 * 9 7 2 11 11 N 1.32603 * 120.85080 * 0.02562 * 10 9 7 12 12 C 1.33045 * 121.40201 * 179.97438 * 11 10 9 13 13 C 1.48287 * 118.62519 * 179.97438 * 12 11 10 14 14 C 1.39391 * 120.12880 * 179.72484 * 13 12 11 15 15 C 1.37999 * 119.86955 * 179.72021 * 14 13 12 16 16 C 1.38329 * 120.12822 * 0.53564 * 15 14 13 17 17 C 1.38327 * 120.25655 * 359.76285 * 16 15 14 18 18 C 1.38010 * 120.12564 * 359.95546 * 17 16 15 19 19 N 1.32084 * 122.75726 * 0.02562 * 12 11 10 20 20 C 1.33950 * 120.43324 * 359.97438 * 19 12 11 21 21 C 1.40240 * 121.88841 * 179.97438 * 20 19 12 22 22 C 1.36323 * 119.59980 * 179.97438 * 21 20 19 23 23 C 1.39300 * 120.99972 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.55399 * 179.97438 * 23 22 21 25 25 C 1.36568 * 120.89128 * 0.02562 * 23 22 21 26 26 C 1.39824 * 119.52626 * 359.73988 * 25 23 22 27 27 H 0.97000 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.06115 * 0.02562 * 14 13 12 29 29 H 1.08008 * 119.93673 * 180.25330 * 15 14 13 30 30 H 1.08005 * 119.87646 * 179.74189 * 16 15 14 31 31 H 1.07996 * 119.93982 * 179.97438 * 17 16 15 32 32 H 1.07996 * 120.06344 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.19743 * 0.02594 * 21 20 19 34 34 H 1.07997 * 119.49575 * 179.97438 * 22 21 20 35 35 H 1.07998 * 120.23828 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4963 2.0464 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5464 1.4402 0.7000 7 6 2.0092 -1.2028 0.0005 8 1 1.4692 -2.1381 0.0005 9 16 3.7712 -1.2028 -0.0069 10 6 4.0772 -2.9380 -0.0039 11 7 3.0741 -3.8053 0.0019 12 6 3.2925 -5.1177 0.0036 13 6 2.1252 -6.0322 0.0108 14 6 2.3178 -7.4127 0.0070 15 6 1.2277 -8.2588 0.0195 16 6 -0.0544 -7.7393 0.0246 17 6 -0.2517 -6.3702 0.0222 18 6 0.8310 -5.5144 0.0155 19 7 4.5056 -5.6404 0.0003 20 6 5.5857 -4.8482 -0.0057 21 6 6.8873 -5.3702 -0.0089 22 6 7.9535 -4.5208 -0.0155 23 6 7.7705 -3.1398 -0.0186 24 17 9.1551 -2.0927 -0.0263 25 6 6.5166 -2.5987 -0.0146 26 6 5.4018 -3.4426 -0.0128 27 1 -0.4850 0.8400 0.0004 28 1 3.3183 -7.8193 -0.0007 29 1 1.3757 -9.3287 0.0207 30 1 -0.9047 -8.4053 0.0302 31 1 -1.2548 -5.9702 0.0257 32 1 0.6758 -4.4456 0.0140 33 1 7.0440 -6.4388 -0.0070 34 1 8.9551 -4.9246 -0.0175 35 1 6.3870 -1.5265 -0.0174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004018902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:00 Heat of formation + Delta-G solvation = 76.300901 kcal Electronic energy + Delta-G solvation = -23112.544499 eV Core-core repulsion = 19613.017995 eV Total energy + Delta-G solvation = -3499.526505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 342.029 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76258 -38.84325 -37.47441 -36.08683 -33.62355 -32.97138 -31.92660 -30.94194 -30.51511 -28.94088 -26.17515 -24.95574 -24.10415 -22.47232 -21.89141 -21.56017 -18.68332 -18.08391 -17.65931 -16.78032 -16.21300 -15.44931 -15.12675 -15.05006 -14.76355 -14.62741 -14.22849 -13.83297 -13.47822 -13.21797 -13.13860 -13.04279 -12.75298 -12.42030 -12.03484 -11.85884 -11.58121 -11.32180 -11.25402 -11.09595 -10.94482 -10.84925 -10.79409 -10.51458 -10.34772 -9.47310 -9.31829 -9.21826 -8.74710 -8.68757 -8.52161 -8.12429 -7.34671 -6.72701 -4.46837 0.28242 0.86245 1.59907 1.67453 2.11782 2.19063 2.26292 2.96939 3.03709 3.10543 3.13825 3.82518 3.98522 3.98890 4.22819 4.53966 4.66460 4.71785 4.80100 4.91946 5.12138 5.14200 5.24037 5.34577 5.41822 5.55611 5.74540 5.82759 5.86520 5.98019 6.05434 6.15943 6.24874 6.32659 6.48513 6.65341 6.72340 6.87174 6.92441 7.18746 7.51863 7.55096 8.40571 8.64066 8.67009 10.34006 Molecular weight = 342.03amu Principal moments of inertia in cm(-1) A = 0.006850 B = 0.005594 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4086.485450 B = 5004.415018 C = 9081.050378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.101 3.899 3 Si 0.842 3.158 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.130 0.870 9 S 0.101 5.899 10 C 0.182 3.818 11 N -0.520 5.520 12 C 0.390 3.610 13 C -0.040 4.040 14 C -0.073 4.073 15 C -0.140 4.140 16 C -0.107 4.107 17 C -0.133 4.133 18 C -0.064 4.064 19 N -0.554 5.554 20 C 0.190 3.810 21 C -0.105 4.105 22 C -0.075 4.075 23 C -0.063 4.063 24 Cl -0.078 7.078 25 C -0.048 4.048 26 C -0.156 4.156 27 H 0.280 0.720 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -9.107 0.058 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.113 4.113 3 Si 0.666 3.334 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.148 0.852 9 S 0.351 5.649 10 C -0.082 4.082 11 N -0.242 5.242 12 C 0.121 3.879 13 C -0.043 4.043 14 C -0.093 4.093 15 C -0.158 4.158 16 C -0.126 4.126 17 C -0.151 4.151 18 C -0.083 4.083 19 N -0.275 5.275 20 C 0.060 3.940 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.092 4.092 24 Cl -0.049 7.049 25 C -0.070 4.070 26 C -0.167 4.167 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.784 -8.389 0.057 12.146 hybrid contribution 0.088 0.515 -0.014 0.522 sum 8.873 -7.874 0.044 11.863 Atomic orbital electron populations 1.69823 1.05975 1.28666 1.42800 1.24877 0.94745 0.98806 0.92835 0.87014 0.81912 0.83905 0.80605 1.18325 1.18573 1.16110 1.23024 0.87453 0.99801 1.57339 0.85195 1.82904 1.12016 0.93263 1.76754 1.24263 0.89208 1.01557 0.93141 1.68690 1.33390 1.01848 1.20231 1.21205 0.90051 0.87912 0.88778 1.18181 0.90425 0.91635 1.04019 1.21287 0.99626 0.91988 0.96405 1.21030 0.92488 0.99493 1.02760 1.21263 0.97016 0.95397 0.98891 1.21148 0.99057 0.93272 1.01594 1.21578 0.90895 1.01712 0.94145 1.68676 0.97831 1.38049 1.22954 1.18774 0.93497 0.88378 0.93304 1.20524 0.89181 1.00261 1.02600 1.20702 0.99764 0.90842 0.98363 1.20396 0.87877 0.91130 1.09778 1.98347 1.42581 1.66780 1.97214 1.20736 0.89729 1.00413 0.96120 1.18929 0.93815 0.95083 1.08882 0.90955 0.84817 0.86020 0.86244 0.85650 0.83761 0.84063 0.84631 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.58 13.96 55.49 0.77 -21.80 16 2 C 0.10 2.58 5.50 -17.46 -0.10 2.49 16 3 Si 0.84 18.11 27.73 -169.99 -4.71 13.39 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.24 -4.82 6.74 56.52 0.38 -4.44 16 7 C -0.53 -13.69 9.83 30.97 0.30 -13.38 16 8 H 0.13 3.67 6.83 -52.48 -0.36 3.32 16 9 S 0.10 2.20 18.24 -107.50 -1.96 0.24 16 10 C 0.18 3.93 7.07 -15.88 -0.11 3.82 16 11 N -0.52 -11.70 7.57 -9.51 -0.07 -11.77 16 12 C 0.39 8.01 7.55 -157.00 -1.18 6.83 16 13 C -0.04 -0.74 5.88 -104.90 -0.62 -1.35 16 14 C -0.07 -1.12 9.55 -39.24 -0.37 -1.49 16 15 C -0.14 -1.78 10.03 -39.64 -0.40 -2.18 16 16 C -0.11 -1.35 10.04 -39.52 -0.40 -1.74 16 17 C -0.13 -1.94 10.03 -39.63 -0.40 -2.33 16 18 C -0.06 -1.13 9.55 -39.23 -0.37 -1.51 16 19 N -0.55 -10.62 9.40 -9.21 -0.09 -10.71 16 20 C 0.19 3.44 6.62 -84.85 -0.56 2.88 16 21 C -0.10 -1.49 10.01 -39.52 -0.40 -1.88 16 22 C -0.08 -0.95 9.72 -39.88 -0.39 -1.33 16 23 C -0.06 -0.89 6.28 -39.79 -0.25 -1.14 16 24 Cl -0.08 -0.96 28.92 -51.86 -1.50 -2.46 16 25 C -0.05 -0.78 9.19 -39.59 -0.36 -1.14 16 26 C -0.16 -2.96 5.76 -106.62 -0.61 -3.57 16 27 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.13 1.94 7.48 -52.49 -0.39 1.55 16 29 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.14 2.91 7.48 -52.49 -0.39 2.51 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.14 2.22 7.00 -52.49 -0.37 1.85 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -27.64 336.76 -11.48 -39.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -2.78 Total: 5.97 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -6.22 Total: -17.06 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.62 Total: -44.28 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.71 Total: 13.39 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.96 Total: 0.24 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.64 -11.48 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004018902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.429 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds