Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31643 * 1 3 3 Si 1.86795 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46781 * 270.26980 * 3 2 1 5 5 H 1.48495 * 109.47449 * 30.27090 * 3 2 1 6 6 H 1.48498 * 109.47513 * 150.27418 * 3 2 1 7 7 C 1.38675 * 119.99705 * 180.26801 * 2 1 3 8 8 H 1.07999 * 119.99933 * 179.72945 * 7 2 1 9 9 S 1.76198 * 119.99774 * 359.72928 * 7 2 1 10 10 C 1.76204 * 99.99829 * 179.97438 * 9 7 2 11 11 N 1.31396 * 126.49023 * 0.02562 * 10 9 7 12 12 N 1.28538 * 109.79612 * 179.97438 * 11 10 9 13 13 C 1.30486 * 110.05789 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.31474 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47008 * 59.97662 * 14 13 12 16 16 C 1.53002 * 109.47154 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46714 * 60.00340 * 16 15 14 18 18 C 1.52991 * 109.47242 * 299.99757 * 17 16 15 19 19 C 1.52999 * 109.47471 * 299.98166 * 14 13 12 20 20 N 1.36483 * 107.37273 * 359.76282 * 13 12 11 21 21 C 1.46494 * 127.12499 * 180.24312 * 20 13 12 22 22 C 1.50709 * 109.47055 * 270.18462 * 21 20 13 23 23 C 1.38225 * 119.99849 * 269.72642 * 22 21 20 24 24 C 1.38238 * 119.99731 * 179.76375 * 23 22 21 25 25 C 1.38229 * 119.99995 * 0.50893 * 24 23 22 26 26 C 1.38238 * 120.00064 * 359.74365 * 25 24 23 27 27 C 1.38229 * 119.99853 * 0.02562 * 26 25 24 28 28 H 0.97000 * 119.99408 * 359.73307 * 1 2 3 29 29 H 1.08999 * 109.47716 * 179.97438 * 14 13 12 30 30 H 1.08999 * 109.47124 * 300.00663 * 15 14 13 31 31 H 1.09008 * 109.46537 * 60.00056 * 15 14 13 32 32 H 1.08998 * 109.47369 * 300.00495 * 16 15 14 33 33 H 1.09001 * 109.46662 * 180.02562 * 16 15 14 34 34 H 1.09000 * 109.46742 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.47076 * 59.99975 * 17 16 15 36 36 H 1.08998 * 109.47264 * 300.00104 * 18 17 16 37 37 H 1.09000 * 109.47357 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46860 * 300.00116 * 19 14 13 39 39 H 1.08998 * 109.47075 * 59.99722 * 19 14 13 40 40 H 1.08997 * 109.47396 * 30.18065 * 21 20 13 41 41 H 1.09002 * 109.47642 * 150.18394 * 21 20 13 42 42 H 1.07999 * 120.00220 * 359.97438 * 23 22 21 43 43 H 1.08011 * 120.00056 * 180.23138 * 24 23 22 44 44 H 1.08001 * 120.00391 * 179.72239 * 25 24 23 45 45 H 1.08006 * 119.99781 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99921 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 2.4922 2.0496 -1.4001 5 1 1.4509 2.6510 0.7057 6 1 3.5509 1.4385 0.6942 7 6 2.0097 -1.2010 -0.0056 8 1 3.0897 -1.2010 -0.0100 9 16 1.1286 -2.7268 -0.0055 10 6 2.4783 -3.8595 -0.0145 11 7 3.7560 -3.5526 -0.0189 12 7 4.4617 -4.6269 -0.0245 13 6 3.6830 -5.6739 -0.0233 14 6 4.1248 -7.1147 -0.0290 15 6 4.9704 -7.3938 1.2153 16 6 5.4183 -8.8568 1.2099 17 6 6.2508 -9.1305 -0.0444 18 6 5.4053 -8.8515 -1.2885 19 6 4.9574 -7.3880 -1.2831 20 7 2.3947 -5.2236 -0.0112 21 6 1.1747 -6.0345 -0.0005 22 6 0.7458 -6.3154 -1.4177 23 6 -0.1180 -5.4503 -2.0627 24 6 -0.5075 -5.7054 -3.3643 25 6 -0.0415 -6.8312 -4.0172 26 6 0.8182 -7.6992 -3.3702 27 6 1.2115 -7.4416 -2.0704 28 1 -0.4849 0.8401 0.0039 29 1 3.2488 -7.7634 -0.0259 30 1 5.8463 -6.7451 1.2123 31 1 4.3771 -7.1991 2.1088 32 1 4.5422 -9.5051 1.2131 33 1 6.0203 -9.0556 2.0966 34 1 6.5703 -10.1726 -0.0480 35 1 7.1269 -8.4822 -0.0475 36 1 4.5291 -9.4998 -1.2853 37 1 5.9982 -9.0469 -2.1821 38 1 4.3551 -7.1891 -2.1696 39 1 5.8334 -6.7394 -1.2861 40 1 1.3685 -6.9758 0.5137 41 1 0.3832 -5.4935 0.5181 42 1 -0.4858 -4.5733 -1.5510 43 1 -1.1795 -5.0274 -3.8697 44 1 -0.3493 -7.0329 -5.0325 45 1 1.1819 -8.5790 -3.8802 46 1 1.8828 -8.1199 -1.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004130563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = 67.063469 kcal Electronic energy + Delta-G solvation = -27755.242073 eV Core-core repulsion = 24156.679212 eV Total energy + Delta-G solvation = -3598.562862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08780 -39.17397 -38.40960 -34.86457 -32.62652 -32.17992 -31.08143 -30.89356 -30.76678 -28.51286 -26.44684 -25.64145 -23.36557 -22.69295 -22.59383 -22.02106 -21.34780 -20.27161 -19.34374 -18.02257 -16.99098 -16.50639 -15.76957 -15.43920 -15.31581 -14.90939 -14.89576 -14.80074 -14.33248 -14.16993 -14.08807 -13.35626 -13.21290 -13.09761 -12.67415 -12.60630 -12.52274 -12.26734 -12.23315 -11.43829 -11.35743 -11.30386 -11.16780 -11.12483 -11.05687 -10.95454 -10.62386 -10.56539 -10.30555 -10.27585 -10.15153 -9.70472 -9.63639 -9.41598 -8.88070 -8.84977 -8.77457 -8.71989 -6.71588 -6.44274 -4.17219 1.24162 1.44815 2.44288 2.56414 3.21338 3.25059 3.31999 3.38955 3.68064 3.90346 4.04217 4.51443 4.61037 4.63713 4.66892 4.73586 4.92451 4.98835 4.99893 5.04805 5.08965 5.12504 5.19772 5.21673 5.31965 5.43630 5.44728 5.46113 5.54839 5.55368 5.65284 5.69734 5.92040 5.94729 5.96419 6.02416 6.07061 6.11771 6.17319 6.24673 6.29146 6.39242 6.44430 6.51889 6.56925 6.67886 6.85881 7.01051 7.46298 7.60487 8.41184 9.08489 9.58361 10.64199 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.004070 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.378738 B = 6878.584505 C = 8897.950849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.104 0.896 9 S 0.124 5.876 10 C 0.171 3.829 11 N -0.309 5.309 12 N -0.289 5.289 13 C 0.150 3.850 14 C 0.016 3.984 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.108 4.108 20 N -0.472 5.472 21 C 0.152 3.848 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.127 4.127 27 C -0.101 4.101 28 H 0.273 0.727 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -20.334 -3.022 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.677 4.677 8 H 0.122 0.878 9 S 0.356 5.644 10 C -0.200 4.200 11 N -0.153 5.153 12 N -0.128 5.128 13 C -0.121 4.121 14 C -0.005 4.005 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.146 4.146 20 N -0.168 5.168 21 C 0.028 3.972 22 C -0.113 4.113 23 C -0.104 4.104 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.146 4.146 27 C -0.120 4.120 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.256 -19.494 -2.984 19.761 hybrid contribution 0.506 0.525 -0.087 0.734 sum 1.762 -18.970 -3.071 19.297 Atomic orbital electron populations 1.69948 1.06003 1.28288 1.47293 1.25041 0.95168 0.99508 0.93621 0.85954 0.79661 0.80161 0.78673 1.19991 1.20717 1.19044 1.23184 0.97119 0.89081 1.58310 0.87834 1.83202 0.98177 0.95686 1.87340 1.28273 1.02177 0.85570 1.03984 1.74747 0.99077 1.18644 1.22827 1.73847 1.27117 0.94580 1.17275 1.24520 0.80783 0.97888 1.08880 1.19401 0.98081 0.86295 0.96750 1.21559 1.00291 0.96491 0.96393 1.21534 0.99729 0.96255 0.97913 1.21554 0.98676 1.00978 0.94613 1.21537 0.99651 0.96255 0.97947 1.21544 1.00283 0.96416 0.96362 1.46309 1.06535 1.05686 1.58265 1.20605 0.86029 0.96136 0.94383 1.19964 0.99049 0.96172 0.96136 1.21359 0.95834 0.98228 0.95023 1.21206 1.00336 0.97355 0.94848 1.21191 0.97521 0.94842 0.99684 1.21050 0.98768 0.99855 0.94879 1.21003 0.99067 0.96853 0.95079 0.91754 0.90656 0.90575 0.92059 0.92151 0.91842 0.92241 0.91716 0.92176 0.91862 0.91978 0.90655 0.88568 0.87686 0.84715 0.85689 0.86209 0.86195 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 13.22 55.48 0.73 -23.78 16 2 C 0.08 2.07 5.49 -17.47 -0.10 1.97 16 3 Si 0.93 21.57 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.94 9.37 30.89 0.29 -14.65 16 8 H 0.10 3.06 6.93 -52.49 -0.36 2.70 16 9 S 0.12 3.07 20.94 -107.50 -2.25 0.82 16 10 C 0.17 4.00 8.06 -88.12 -0.71 3.29 16 11 N -0.31 -7.89 11.04 30.72 0.34 -7.55 16 12 N -0.29 -6.48 12.18 32.97 0.40 -6.08 16 13 C 0.15 2.72 6.57 -154.10 -1.01 1.71 16 14 C 0.02 0.20 2.55 -91.77 -0.23 -0.03 16 15 C -0.11 -1.30 5.19 -26.73 -0.14 -1.44 16 16 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 17 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 18 C -0.12 -1.05 5.92 -26.71 -0.16 -1.20 16 19 C -0.11 -1.30 5.19 -26.71 -0.14 -1.44 16 20 N -0.47 -8.80 2.79 -114.78 -0.32 -9.12 16 21 C 0.15 2.17 5.87 -5.19 -0.03 2.14 16 22 C -0.11 -1.56 5.46 -104.62 -0.57 -2.13 16 23 C -0.09 -1.27 9.70 -39.59 -0.38 -1.65 16 24 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 25 C -0.11 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.10 -1.21 9.70 -39.58 -0.38 -1.60 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.08 0.84 5.76 -51.93 -0.30 0.54 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.07 7.17 -51.93 -0.37 0.70 16 41 H 0.10 1.49 7.80 -51.93 -0.41 1.09 16 42 H 0.14 2.16 7.60 -52.49 -0.40 1.76 16 43 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 46 H 0.12 1.19 6.88 -52.48 -0.36 0.83 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -32.50 388.16 -12.18 -44.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.83 Total: 1.53 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -5.08 Total: -22.89 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 1.15 Total: -46.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.25 Total: 0.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.50 -12.18 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004130563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds