Wall clock time and date at job start Tue Mar 31 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34184 * 126.62173 * 2 1 4 4 N 1.20727 * 113.02130 * 180.33916 * 3 2 1 5 5 C 1.31149 * 111.73880 * 359.71692 * 4 3 2 6 6 C 1.48374 * 127.35512 * 180.02562 * 5 4 3 7 7 C 1.39347 * 120.11748 * 144.72712 * 6 5 4 8 8 C 1.38018 * 119.87145 * 179.76881 * 7 6 5 9 9 C 1.38327 * 120.12391 * 0.48707 * 8 7 6 10 10 C 1.38327 * 120.24242 * 359.78823 * 9 8 7 11 11 C 1.38015 * 120.12478 * 359.95507 * 10 9 8 12 12 C 1.35796 * 126.61382 * 179.86545 * 2 1 3 13 13 N 1.40636 * 128.40799 * 359.96800 * 12 2 1 14 14 C 1.34775 * 120.00255 * 315.44481 * 13 12 2 15 15 O 1.21597 * 119.99836 * 5.88543 * 14 13 12 16 16 N 1.34779 * 120.00215 * 186.15987 * 14 13 12 17 17 C 1.46499 * 120.00000 * 175.56675 * 16 14 13 18 18 C 1.50704 * 109.47499 * 89.99515 * 17 16 14 19 19 H 1.07994 * 119.99894 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99626 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00831 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99563 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47162 * 119.99733 * 22 20 18 25 25 H 1.48498 * 109.47184 * 239.99824 * 22 20 18 26 26 C 1.46496 * 119.99725 * 355.55926 * 16 14 13 27 27 C 1.53003 * 109.46793 * 124.29382 * 26 16 14 28 28 C 1.53005 * 109.47245 * 244.28892 * 26 16 14 29 29 H 1.09003 * 109.47540 * 277.92231 * 1 2 3 30 30 H 1.09002 * 109.46773 * 37.92711 * 1 2 3 31 31 H 1.09001 * 109.47189 * 157.92395 * 1 2 3 32 32 H 1.07996 * 120.06652 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.93856 * 180.25141 * 8 7 6 34 34 H 1.08000 * 119.87545 * 179.76677 * 9 8 7 35 35 H 1.08000 * 119.93597 * 179.97438 * 10 9 8 36 36 H 1.07994 * 120.06370 * 180.02562 * 11 10 9 37 37 H 0.97003 * 120.00428 * 135.45294 * 13 12 2 38 38 H 1.09002 * 109.47062 * 209.99835 * 17 16 14 39 39 H 1.09003 * 109.46944 * 329.99432 * 17 16 14 40 40 H 0.96997 * 120.00422 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.47380 * 4.28827 * 26 16 14 42 42 H 1.08997 * 109.47300 * 60.00005 * 27 26 16 43 43 H 1.08999 * 109.47105 * 179.97438 * 27 26 16 44 44 H 1.09000 * 109.46744 * 299.99454 * 27 26 16 45 45 H 1.09001 * 109.46665 * 59.99943 * 28 26 16 46 46 H 1.08999 * 109.47120 * 180.02562 * 28 26 16 47 47 H 1.09006 * 109.46915 * 300.00685 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3074 1.0770 0.0000 4 7 3.4808 0.7931 -0.0066 5 6 3.6665 -0.5052 -0.0060 6 6 4.9615 -1.2294 -0.0122 7 6 5.0952 -2.4287 0.6845 8 6 6.3007 -3.1006 0.6714 9 6 7.3778 -2.5805 -0.0234 10 6 7.2522 -1.3874 -0.7120 11 6 6.0499 -0.7098 -0.7101 12 6 2.3169 -1.0900 0.0026 13 7 1.9534 -2.4486 0.0064 14 6 0.9761 -2.8824 0.8268 15 8 0.3362 -2.0850 1.4849 16 7 0.7119 -4.2007 0.9221 17 6 -0.2827 -4.6807 1.8846 18 6 -1.6401 -4.7126 1.2307 19 1 -1.7509 -4.4056 0.2012 20 6 -2.7406 -5.1327 1.9471 21 7 -2.6059 -5.5061 3.2009 22 14 -4.4231 -5.1730 1.1363 23 1 -4.3065 -4.7079 -0.2691 24 1 -4.9493 -6.5615 1.1566 25 1 -5.3510 -4.2811 1.8770 26 6 1.4193 -5.1534 0.0630 27 6 2.1075 -6.2090 0.9308 28 6 0.4197 -5.8356 -0.8732 29 1 -0.3634 0.1416 1.0179 30 1 -0.3633 0.8106 -0.6317 31 1 -0.3633 -0.9523 -0.3862 32 1 4.2560 -2.8339 1.2304 33 1 6.4044 -4.0323 1.2077 34 1 8.3204 -3.1077 -0.0279 35 1 8.0965 -0.9856 -1.2525 36 1 5.9528 0.2214 -1.2484 37 1 2.4061 -3.0735 -0.5814 38 1 -0.0145 -5.6844 2.2142 39 1 -0.3092 -4.0109 2.7442 40 1 -3.3801 -5.8020 3.7047 41 1 2.1673 -4.6243 -0.5274 42 1 1.3594 -6.7381 1.5211 43 1 2.6335 -6.9181 0.2916 44 1 2.8196 -5.7230 1.5977 45 1 -0.0706 -5.0835 -1.4914 46 1 0.9460 -6.5448 -1.5121 47 1 -0.3284 -6.3646 -0.2828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004325263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:49 Heat of formation + Delta-G solvation = 64.311457 kcal Electronic energy + Delta-G solvation = -30732.833715 eV Core-core repulsion = 26691.398646 eV Total energy + Delta-G solvation = -4041.435069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.57837 -39.88402 -39.21506 -36.46716 -35.07988 -33.56651 -32.85517 -32.08270 -31.14777 -30.85294 -30.29236 -27.63991 -26.95919 -26.79531 -24.07154 -23.38407 -22.76648 -22.04641 -21.47967 -20.24956 -18.82362 -18.21866 -17.47977 -17.13229 -16.91447 -16.50442 -15.97919 -15.19691 -15.01782 -14.80032 -14.64562 -14.26783 -13.80719 -13.67457 -13.62138 -13.43091 -13.27616 -13.03875 -12.70427 -12.55355 -12.33218 -12.23700 -11.89979 -11.63791 -11.57554 -11.47542 -11.28796 -11.21717 -11.02734 -10.90644 -10.72778 -10.62590 -10.46909 -10.05650 -9.84749 -9.59156 -9.29964 -9.16465 -8.73150 -8.44840 -8.29799 -7.67081 -6.05798 -4.08990 0.76927 1.18685 1.69826 2.28074 2.77876 3.27761 3.36269 3.38479 3.44473 3.57235 3.77769 3.96256 4.31222 4.41201 4.45390 4.75630 4.80384 4.89961 5.10248 5.15188 5.19875 5.28517 5.33876 5.44395 5.46346 5.50452 5.60831 5.74418 5.82289 5.87907 5.93174 6.01667 6.06001 6.15001 6.24128 6.28071 6.28717 6.34006 6.47501 6.51224 6.70148 6.72153 6.83320 6.89070 7.33299 7.47642 7.60799 7.91855 8.21978 8.32928 8.53174 8.91216 9.18364 9.55594 11.02130 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.003545 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.022226 B = 7897.251664 C = 9369.119458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.019 4.019 3 O 0.096 5.904 4 N -0.344 5.344 5 C 0.042 3.958 6 C -0.013 4.013 7 C -0.092 4.092 8 C -0.117 4.117 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.093 4.093 12 C 0.059 3.941 13 N -0.666 5.666 14 C 0.698 3.302 15 O -0.564 6.564 16 N -0.600 5.600 17 C 0.261 3.739 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.138 3.862 27 C -0.161 4.161 28 C -0.159 4.159 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.403 0.597 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.893 3.541 -9.325 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 O 0.031 5.969 4 N -0.048 5.048 5 C -0.120 4.120 6 C -0.014 4.014 7 C -0.112 4.112 8 C -0.135 4.135 9 C -0.131 4.131 10 C -0.140 4.140 11 C -0.112 4.112 12 C -0.041 4.041 13 N -0.322 5.322 14 C 0.400 3.600 15 O -0.439 6.439 16 N -0.335 5.335 17 C 0.142 3.858 18 C -0.557 4.557 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.033 3.967 27 C -0.219 4.219 28 C -0.217 4.217 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.242 0.758 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.044 5.057 -8.627 19.761 hybrid contribution -1.030 -1.188 -0.630 1.693 sum 16.014 3.869 -9.257 18.897 Atomic orbital electron populations 1.20297 0.82668 1.03523 1.04432 1.24073 0.95980 0.84851 1.03480 1.84627 1.10978 1.32567 1.68764 1.74084 0.96761 1.15037 1.18917 1.22874 0.93277 0.89671 1.06145 1.17638 0.89543 0.94623 0.99547 1.21247 0.98294 0.93884 0.97752 1.21112 0.92673 1.00155 0.99591 1.21271 0.98798 0.95995 0.97016 1.21081 0.97300 0.95609 0.99994 1.21208 0.92119 0.99584 0.98274 1.18654 0.89768 0.85801 1.09904 1.42206 1.40803 1.04937 1.44212 1.15919 0.80003 0.83741 0.80334 1.90926 1.51522 1.53270 1.48213 1.47670 1.42701 1.02375 1.40785 1.19224 0.84561 0.95050 0.86990 1.21473 0.92271 1.43498 0.98447 0.92276 1.24911 0.98962 0.95460 0.94775 1.69931 1.30485 1.44609 1.08407 0.86509 0.84277 0.77479 0.79527 1.19858 1.21116 1.20986 1.20900 0.93379 0.90771 0.91618 1.22154 1.00816 0.98774 1.00206 1.22183 0.99932 1.00544 0.99061 0.88558 0.91267 0.89073 0.85441 0.85400 0.85796 0.85658 0.85656 0.75753 0.94458 0.94018 0.92843 0.92012 0.90849 0.92194 0.92846 0.92846 0.93148 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.79 8.57 36.00 0.31 -0.48 16 2 C -0.02 -0.31 7.14 -35.19 -0.25 -0.56 16 3 O 0.10 1.50 11.10 16.85 0.19 1.69 16 4 N -0.34 -5.47 12.09 34.46 0.42 -5.05 16 5 C 0.04 0.63 7.00 -80.40 -0.56 0.07 16 6 C -0.01 -0.17 5.87 -104.90 -0.62 -0.78 16 7 C -0.09 -1.11 9.54 -39.25 -0.37 -1.49 16 8 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 9 C -0.11 -0.97 10.04 -39.52 -0.40 -1.37 16 10 C -0.12 -1.11 10.03 -39.63 -0.40 -1.51 16 11 C -0.09 -1.05 9.77 -39.25 -0.38 -1.43 16 12 C 0.06 0.96 6.74 -81.10 -0.55 0.41 16 13 N -0.67 -10.53 4.78 -12.61 -0.06 -10.59 16 14 C 0.70 13.77 7.65 -86.92 -0.67 13.11 16 15 O -0.56 -13.15 12.50 5.28 0.07 -13.08 16 16 N -0.60 -11.68 2.39 -173.16 -0.41 -12.09 16 17 C 0.26 6.31 4.67 -5.19 -0.02 6.28 16 18 C -0.52 -13.60 7.85 -34.44 -0.27 -13.87 16 19 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.14 2.07 3.25 -67.93 -0.22 1.85 16 27 C -0.16 -2.18 9.09 37.16 0.34 -1.84 16 28 C -0.16 -2.42 8.59 37.16 0.32 -2.10 16 29 H 0.10 1.60 7.64 -51.93 -0.40 1.20 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.55 6.97 -51.93 -0.36 1.19 16 32 H 0.13 1.66 7.56 -52.49 -0.40 1.26 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.40 5.36 6.22 -40.82 -0.25 5.11 16 38 H 0.04 0.91 6.21 -51.93 -0.32 0.59 16 39 H 0.04 1.17 7.48 -51.93 -0.39 0.78 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.06 0.77 5.46 -51.93 -0.28 0.48 16 42 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -31.03 388.13 -8.92 -39.95 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.44 Total: 5.75 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.24 Total: -3.70 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.68 Total: -52.51 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.25 Total: -11.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.03 -8.92 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.262 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds