Wall clock time and date at job start Tue Mar 31 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38477 * 119.81657 * 2 1 4 4 C 1.37821 * 120.17950 * 179.97438 * 3 2 1 5 5 C 1.40006 * 119.81894 * 359.97438 * 4 3 2 6 6 C 1.47045 * 120.18366 * 179.97438 * 5 4 3 7 7 N 1.29528 * 125.28940 * 0.02562 * 6 5 4 8 8 N 1.39330 * 113.97689 * 179.97438 * 7 6 5 9 9 C 1.34783 * 125.53907 * 180.02562 * 8 7 6 10 10 O 1.21917 * 120.00021 * 179.97438 * 9 8 7 11 11 C 1.41053 * 119.99409 * 359.97354 * 9 8 7 12 12 H 1.07993 * 120.00450 * 359.97438 * 11 9 8 13 13 C 1.40228 * 119.99509 * 180.02562 * 11 9 8 14 14 N 1.30586 * 120.00324 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99933 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46944 * 59.99860 * 15 13 11 17 17 H 1.48499 * 109.47218 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47152 * 300.00306 * 15 13 11 19 19 C 1.47126 * 108.92963 * 359.97438 * 8 7 6 20 20 O 1.42897 * 110.58515 * 241.45300 * 19 8 7 21 21 C 1.52998 * 110.58576 * 118.55031 * 19 8 7 22 22 F 1.39904 * 109.46624 * 305.74210 * 21 19 8 23 23 F 1.39901 * 109.47123 * 65.73587 * 21 19 8 24 24 F 1.39898 * 109.47686 * 185.73917 * 21 19 8 25 25 C 1.51199 * 125.28755 * 179.97438 * 6 5 4 26 26 C 1.40014 * 119.63643 * 0.25010 * 5 4 3 27 27 C 1.37827 * 119.81059 * 359.51801 * 26 5 4 28 28 H 1.09000 * 109.47005 * 90.00633 * 1 2 3 29 29 H 1.08998 * 109.47740 * 210.00393 * 1 2 3 30 30 H 1.09001 * 109.46991 * 330.01056 * 1 2 3 31 31 H 1.08000 * 119.90892 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.08893 * 180.02562 * 4 3 2 33 33 H 0.96998 * 120.00096 * 180.02562 * 14 13 11 34 34 H 0.96703 * 114.00057 * 294.26428 * 20 19 8 35 35 H 1.09001 * 110.52663 * 61.39277 * 25 6 5 36 36 H 1.08995 * 110.52893 * 298.64379 * 25 6 5 37 37 H 1.08001 * 120.09512 * 179.72617 * 26 5 4 38 38 H 1.07994 * 119.90928 * 180.25283 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2015 0.0000 4 6 3.5737 1.2102 0.0005 5 6 4.2776 -0.0001 0.0016 6 6 5.7480 -0.0001 0.0016 7 7 6.4964 1.0571 0.0012 8 7 7.8626 0.7838 0.0019 9 6 8.8460 1.7055 0.0021 10 8 10.0128 1.3520 0.0032 11 6 8.5250 3.0790 0.0010 12 1 7.4915 3.3921 -0.0004 13 6 9.5481 4.0380 0.0006 14 7 10.7979 3.6595 0.0008 15 14 9.1232 5.8570 -0.0015 16 1 8.3281 6.1810 1.2102 17 1 10.3740 6.6576 -0.0022 18 1 8.3296 6.1786 -1.2149 19 6 8.0576 -0.6745 0.0036 20 8 8.7575 -1.0864 1.1793 21 6 8.8077 -1.1185 -1.2538 22 9 8.1371 -0.6471 -2.3876 23 9 10.1062 -0.5983 -1.2302 24 9 8.8657 -2.5157 -1.2935 25 6 6.6215 -1.2343 0.0033 26 6 3.5737 -1.2104 -0.0032 27 6 2.1955 -1.2015 0.0012 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.6511 2.1342 0.0004 32 1 4.1093 2.1481 0.0009 33 1 11.5056 4.3229 0.0010 34 1 9.6668 -0.7615 1.2299 35 1 6.4433 -1.8299 -0.8921 36 1 6.4428 -1.8278 0.8999 37 1 4.1092 -2.1483 -0.0068 38 1 1.6509 -2.1341 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004487012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:48 Heat of formation + Delta-G solvation = -159.605822 kcal Electronic energy + Delta-G solvation = -30747.096666 eV Core-core repulsion = 25947.854797 eV Total energy + Delta-G solvation = -4799.241869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.66222 -47.24953 -47.01657 -40.17362 -39.00405 -36.68994 -35.88843 -33.28810 -32.78991 -31.12240 -30.73919 -30.04087 -27.32511 -26.61241 -25.72593 -22.75868 -22.47528 -21.73392 -20.17992 -19.84684 -18.55091 -18.00878 -17.77963 -17.19117 -16.74871 -15.68460 -15.49997 -15.12521 -14.66200 -14.49975 -14.32490 -14.05496 -14.00822 -13.83587 -13.63837 -13.58072 -13.50515 -13.39163 -13.20186 -13.16792 -13.10281 -12.81776 -12.76842 -12.33013 -12.14717 -11.95717 -11.40530 -11.34860 -11.27666 -11.04001 -10.85146 -10.80311 -10.59802 -10.44828 -9.66040 -9.12429 -8.92579 -8.85422 -8.10871 -7.52824 -6.53796 -5.03071 0.94092 1.46251 2.56066 2.81040 3.04396 3.08816 3.11048 3.31778 3.77301 3.89664 3.94356 3.97412 4.16541 4.37274 4.50912 4.53672 4.81570 4.85546 4.92190 5.04247 5.08420 5.29555 5.42837 5.45043 5.48663 5.60195 5.65481 5.67313 5.77875 5.93665 6.07401 6.16264 6.53434 6.58691 6.60051 6.99329 7.15751 7.48951 7.71762 7.86141 8.06369 8.68429 9.03390 10.11708 10.35195 Molecular weight = 342.10amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.004637 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.193459 B = 6036.329849 C = 8312.022108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.120 4.120 4 C -0.084 4.084 5 C -0.008 4.008 6 C 0.062 3.938 7 N -0.168 5.168 8 N -0.465 5.465 9 C 0.557 3.443 10 O -0.554 6.554 11 C -0.502 4.502 12 H 0.084 0.916 13 C 0.083 3.917 14 N -0.741 5.741 15 Si 0.920 3.080 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.263 1.263 19 C 0.277 3.723 20 O -0.534 6.534 21 C 0.424 3.576 22 F -0.177 7.177 23 F -0.148 7.148 24 F -0.185 7.185 25 C -0.104 4.104 26 C -0.098 4.098 27 C -0.122 4.122 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.277 0.723 34 H 0.401 0.599 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 -8.060 -0.365 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.104 4.104 5 C -0.010 4.010 6 C -0.128 4.128 7 N 0.021 4.979 8 N -0.299 5.299 9 C 0.373 3.627 10 O -0.434 6.434 11 C -0.536 4.536 12 H 0.102 0.898 13 C -0.141 4.141 14 N -0.368 5.368 15 Si 0.743 3.257 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.188 1.188 19 C 0.147 3.853 20 O -0.340 6.340 21 C 0.367 3.633 22 F -0.159 7.159 23 F -0.129 7.129 24 F -0.166 7.166 25 C -0.144 4.144 26 C -0.119 4.119 27 C -0.140 4.140 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.486 -7.379 -0.226 16.259 hybrid contribution 0.787 0.112 -0.377 0.880 sum -13.700 -7.268 -0.603 15.520 Atomic orbital electron populations 1.20792 0.91409 1.02637 1.02197 1.20046 0.95944 0.93250 0.99626 1.20957 0.93897 0.97538 1.01437 1.21433 0.93869 0.97971 0.97092 1.17776 0.87436 0.93875 1.01913 1.22880 0.93251 0.90405 1.06231 1.74825 0.91264 1.25552 1.06272 1.51808 1.01663 1.02468 1.73989 1.16958 0.81771 0.85144 0.78872 1.90792 1.15916 1.79540 1.57105 1.20008 0.95221 0.88879 1.49465 0.89772 1.25916 0.94255 1.01576 0.92383 1.69967 0.99999 1.35978 1.30887 0.86209 0.78707 0.80725 0.80042 1.18757 1.20248 1.18758 1.22764 0.92705 0.86375 0.83457 1.86519 1.32317 1.75836 1.39304 1.21438 0.80241 0.74842 0.86801 1.93172 1.80359 1.88324 1.54005 1.93378 1.37333 1.85780 1.96384 1.93149 1.96523 1.30139 1.96835 1.21809 0.87980 0.98568 1.06016 1.21196 0.94081 0.96921 0.99668 1.20849 0.93714 0.97472 1.01938 0.91265 0.91676 0.91609 0.85841 0.84653 0.91247 0.74601 0.87551 0.86285 0.85608 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.00 36.01 0.36 -0.45 16 2 C -0.09 -0.88 5.89 -104.45 -0.62 -1.49 16 3 C -0.12 -1.35 9.68 -39.65 -0.38 -1.73 16 4 C -0.08 -1.15 9.69 -39.07 -0.38 -1.52 16 5 C -0.01 -0.12 5.88 -105.00 -0.62 -0.73 16 6 C 0.06 1.08 7.19 -79.75 -0.57 0.50 16 7 N -0.17 -3.59 10.74 35.11 0.38 -3.22 16 8 N -0.47 -11.12 3.45 -54.04 -0.19 -11.31 16 9 C 0.56 15.58 7.36 -15.19 -0.11 15.47 16 10 O -0.55 -16.55 11.50 4.99 0.06 -16.49 16 11 C -0.50 -13.95 9.01 -37.77 -0.34 -14.29 16 12 H 0.08 2.23 7.40 -52.49 -0.39 1.85 16 13 C 0.08 2.21 5.50 -17.33 -0.10 2.11 16 14 N -0.74 -20.89 11.71 55.56 0.65 -20.24 16 15 Si 0.92 19.44 29.56 -169.99 -5.02 14.41 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 19 C 0.28 5.65 0.98 -67.00 -0.07 5.58 16 20 O -0.53 -10.73 13.18 -35.23 -0.46 -11.19 16 21 C 0.42 8.72 2.36 37.16 0.09 8.81 16 22 F -0.18 -3.71 16.80 2.25 0.04 -3.67 16 23 F -0.15 -3.50 13.88 2.25 0.03 -3.46 16 24 F -0.18 -3.30 16.93 2.25 0.04 -3.27 16 25 C -0.10 -1.68 5.14 -27.04 -0.14 -1.82 16 26 C -0.10 -1.12 9.61 -39.07 -0.38 -1.50 16 27 C -0.12 -1.21 9.68 -39.64 -0.38 -1.60 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.97 7.81 -52.48 -0.41 1.56 16 33 H 0.28 7.03 8.29 -40.82 -0.34 6.70 16 34 H 0.40 8.18 7.68 45.56 0.35 8.53 16 35 H 0.11 1.48 7.44 -51.93 -0.39 1.10 16 36 H 0.12 1.67 8.00 -51.93 -0.42 1.26 16 37 H 0.13 1.19 7.48 -52.49 -0.39 0.80 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -32.45 341.55 -5.85 -38.30 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.88 Total: 7.65 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -3.63 Total: 7.34 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.84 Total: -34.77 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.41 Total: -27.68 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 0.11 Total: -10.40 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.45 -5.85 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004487012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.308 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds