Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52070 * 114.63994 * 2 1 4 4 C 1.52876 * 110.51455 * 194.37372 * 3 2 1 5 5 C 1.53301 * 108.59265 * 54.88769 * 4 3 2 6 6 C 1.52879 * 108.58102 * 285.55799 * 5 4 3 7 7 C 1.52074 * 115.31182 * 214.33136 * 2 1 3 8 8 H 1.09002 * 117.25227 * 0.36111 * 7 2 1 9 9 C 1.52307 * 115.91166 * 146.24929 * 2 1 3 10 10 H 1.08997 * 117.53752 * 213.23918 * 9 2 1 11 11 C 1.50703 * 117.53874 * 358.40468 * 9 2 1 12 12 O 1.21313 * 119.99853 * 6.77422 * 11 9 2 13 13 N 1.34769 * 120.00038 * 186.77221 * 11 9 2 14 14 N 1.40101 * 120.00116 * 174.86286 * 13 11 9 15 15 C 1.29836 * 120.00419 * 183.78953 * 14 13 11 16 16 C 1.47306 * 120.00590 * 185.30633 * 15 14 13 17 17 C 1.39678 * 120.20205 * 176.21530 * 16 15 14 18 18 C 1.37882 * 119.90694 * 180.02562 * 17 16 15 19 19 C 1.38525 * 120.31905 * 0.02562 * 18 17 16 20 20 C 1.38112 * 120.40684 * 0.02562 * 19 18 17 21 21 C 1.38729 * 120.08112 * 359.97438 * 20 19 18 22 22 O 1.35606 * 120.16020 * 180.02562 * 21 20 19 23 23 C 1.34803 * 116.99530 * 92.57782 * 22 21 20 24 24 H 1.07995 * 120.00161 * 5.44690 * 23 22 21 25 25 C 1.38647 * 120.00184 * 185.44912 * 23 22 21 26 26 N 1.31560 * 120.00668 * 185.30928 * 25 23 22 27 27 Si 1.86802 * 119.99649 * 5.30871 * 25 23 22 28 28 H 1.48495 * 109.47224 * 94.88645 * 27 25 23 29 29 H 1.48504 * 109.47233 * 214.88567 * 27 25 23 30 30 H 1.48500 * 109.47423 * 334.88171 * 27 25 23 31 31 H 1.08992 * 109.47043 * 276.31664 * 1 2 3 32 32 H 1.09005 * 109.46659 * 36.31833 * 1 2 3 33 33 H 1.09002 * 109.47301 * 156.31216 * 1 2 3 34 34 H 1.08997 * 109.26699 * 314.63446 * 3 2 1 35 35 H 1.08993 * 109.27105 * 74.13871 * 3 2 1 36 36 H 1.09000 * 109.61878 * 174.62424 * 4 3 2 37 37 H 1.09006 * 109.61508 * 294.97774 * 4 3 2 38 38 H 1.08995 * 109.61621 * 45.28859 * 5 4 3 39 39 H 1.09000 * 109.61866 * 165.83403 * 5 4 3 40 40 H 1.09000 * 109.35511 * 174.72872 * 6 5 4 41 41 H 1.08996 * 109.36158 * 294.45163 * 6 5 4 42 42 H 0.97004 * 120.00273 * 354.85674 * 13 11 9 43 43 H 1.08000 * 120.00113 * 5.30512 * 15 14 13 44 44 H 1.08000 * 120.04983 * 0.02562 * 17 16 15 45 45 H 1.08001 * 119.84564 * 180.02562 * 18 17 16 46 46 H 1.08008 * 119.79987 * 179.72187 * 19 18 17 47 47 H 1.07997 * 119.96185 * 179.97438 * 20 19 18 48 48 H 0.96990 * 120.00082 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1640 1.3822 0.0000 4 6 3.6481 1.2909 -0.3554 5 6 3.7859 0.5550 -1.6932 6 6 3.5310 -0.9340 -1.4585 7 6 2.1802 -1.1352 -0.7753 8 1 1.5176 -1.8465 -1.2685 9 6 2.1956 -1.1391 0.7611 10 1 3.1429 -0.9279 1.2572 11 6 1.2986 -2.1248 1.4645 12 8 0.0965 -2.0675 1.3114 13 7 1.8318 -3.0700 2.2636 14 7 0.9948 -3.9173 3.0015 15 6 1.5074 -4.7785 3.8269 16 6 0.6372 -5.7477 4.5148 17 6 1.1922 -6.7265 5.3425 18 6 0.3720 -7.6309 5.9830 19 6 -1.0012 -7.5745 5.8097 20 6 -1.5638 -6.6128 4.9935 21 6 -0.7543 -5.6945 4.3409 22 8 -1.3051 -4.7492 3.5396 23 6 -1.5922 -3.5596 4.1048 24 1 -1.3028 -3.3632 5.1266 25 6 -2.2591 -2.5879 3.3744 26 7 -2.4471 -1.3917 3.8885 27 14 -2.8906 -2.9775 1.6601 28 1 -4.3138 -3.3940 1.7396 29 1 -2.7755 -1.7697 0.8037 30 1 -2.0847 -4.0784 1.0739 31 1 -0.3633 0.1131 1.0214 32 1 -0.3633 0.8281 -0.6087 33 1 -0.3634 -0.9411 -0.4129 34 1 1.6569 2.0105 -0.7322 35 1 2.0584 1.8264 0.9897 36 1 4.0654 2.2939 -0.4448 37 1 4.1778 0.7423 0.4234 38 1 3.0550 0.9442 -2.4019 39 1 4.7925 0.6964 -2.0866 40 1 3.5333 -1.4561 -2.4154 41 1 4.3186 -1.3398 -0.8237 42 1 2.7951 -3.1638 2.3279 43 1 2.5719 -4.7843 4.0091 44 1 2.2622 -6.7748 5.4805 45 1 0.8021 -8.3871 6.6231 46 1 -1.6355 -8.2900 6.3120 47 1 -2.6353 -6.5757 4.8632 48 1 -2.9133 -0.7119 3.3773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004544675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = 39.736774 kcal Electronic energy + Delta-G solvation = -30490.611673 eV Core-core repulsion = 26513.536877 eV Total energy + Delta-G solvation = -3977.074796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.59649 -39.10817 -38.09903 -36.18619 -35.76450 -33.43589 -32.35096 -31.70539 -31.27879 -29.92235 -28.95704 -27.48121 -25.31436 -24.56869 -23.43205 -22.08213 -21.65025 -21.57781 -20.02585 -19.86613 -18.35274 -17.58145 -16.78778 -16.71118 -16.48595 -15.46660 -15.06896 -14.71300 -14.46680 -14.21377 -14.15521 -14.11989 -13.79935 -13.70582 -13.50854 -13.03437 -12.86774 -12.81734 -12.34019 -12.00321 -11.94266 -11.84045 -11.75862 -11.59562 -11.53227 -11.27653 -11.09994 -11.09013 -10.90191 -10.61485 -10.37369 -10.03660 -9.88892 -9.72383 -9.52638 -9.29195 -9.26426 -9.03759 -8.87095 -8.08411 -7.96848 -7.42270 -5.78163 -3.46540 1.39152 1.96710 2.67541 3.00252 3.26896 3.65488 3.77748 3.91988 3.96344 4.37871 4.50614 4.58440 4.64860 4.85978 4.89768 4.91549 5.02676 5.07531 5.18966 5.21970 5.28935 5.37052 5.39597 5.43571 5.45442 5.55358 5.62504 5.67418 5.77335 5.80123 5.82917 5.88047 5.96874 6.02907 6.08345 6.09465 6.11952 6.22239 6.25543 6.30260 6.49009 6.49592 6.61350 6.88536 6.92589 6.95859 7.22034 7.41430 7.68928 8.13560 8.23028 8.59417 9.06593 9.63325 10.20646 11.33058 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003675 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.035051 B = 7616.992448 C = 8969.087518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.083 4.083 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.089 4.089 7 C -0.118 4.118 8 H 0.108 0.892 9 C -0.181 4.181 10 H 0.118 0.882 11 C 0.548 3.452 12 O -0.461 6.461 13 N -0.592 5.592 14 N -0.143 5.143 15 C 0.072 3.928 16 C -0.087 4.087 17 C -0.087 4.087 18 C -0.157 4.157 19 C -0.099 4.099 20 C -0.154 4.154 21 C 0.182 3.818 22 O -0.255 6.255 23 C -0.339 4.339 24 H 0.073 0.927 25 C 0.078 3.922 26 N -0.908 5.908 27 Si 0.922 3.078 28 H -0.306 1.306 29 H -0.289 1.289 30 H -0.266 1.266 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.370 0.630 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.126 0.874 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.518 -1.202 -6.155 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.120 4.120 4 C -0.160 4.160 5 C -0.156 4.156 6 C -0.127 4.127 7 C -0.137 4.137 8 H 0.126 0.874 9 C -0.204 4.204 10 H 0.136 0.864 11 C 0.334 3.666 12 O -0.330 6.330 13 N -0.334 5.334 14 N 0.053 4.947 15 C -0.139 4.139 16 C -0.090 4.090 17 C -0.108 4.108 18 C -0.175 4.175 19 C -0.118 4.118 20 C -0.173 4.173 21 C 0.134 3.866 22 O -0.167 6.167 23 C -0.414 4.414 24 H 0.091 0.909 25 C -0.120 4.120 26 N -0.552 5.552 27 Si 0.753 3.247 28 H -0.234 1.234 29 H -0.215 1.215 30 H -0.190 1.190 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.206 0.794 43 H 0.122 0.878 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.144 0.856 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.761 -0.470 -7.024 15.457 hybrid contribution 1.264 -0.367 0.018 1.316 sum 15.025 -0.837 -7.006 16.599 Atomic orbital electron populations 1.21566 0.90437 1.01702 1.03321 1.21087 0.96236 0.89921 0.99580 1.20883 0.94832 0.94022 1.02270 1.21635 0.96493 1.00419 0.97459 1.21563 1.01278 0.95186 0.97532 1.21093 0.94669 0.96667 1.00242 1.22517 0.99086 1.02083 0.90030 0.87387 1.22476 1.01393 1.01269 0.95279 0.86425 1.19472 0.88724 0.79801 0.78620 1.90732 1.14413 1.69176 1.58650 1.47251 1.06944 1.34807 1.44378 1.75942 1.18030 0.98072 1.02617 1.24146 0.96488 0.95487 0.97751 1.18922 0.93015 0.96707 1.00391 1.20910 0.99112 0.94464 0.96282 1.20786 0.93665 1.00550 1.02489 1.21035 0.94902 0.97777 0.98133 1.21614 1.00642 0.97278 0.97754 1.19109 0.89641 0.90290 0.87561 1.83462 1.78800 1.21784 1.32688 1.19975 1.36155 0.87515 0.97800 0.90934 1.23982 0.96481 0.93562 0.98015 1.69670 1.44218 1.02846 1.38463 0.85881 0.75925 0.78171 0.84728 1.23435 1.21510 1.19049 0.90755 0.93668 0.91138 0.90952 0.91141 0.91735 0.91902 0.91534 0.91990 0.91376 0.91584 0.79375 0.87802 0.86320 0.86518 0.86521 0.85581 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 7.93 37.16 0.29 -1.71 16 2 C -0.07 -0.95 2.57 -155.81 -0.40 -1.35 16 3 C -0.08 -0.93 5.49 -27.27 -0.15 -1.08 16 4 C -0.12 -1.10 5.70 -26.64 -0.15 -1.25 16 5 C -0.12 -1.00 5.93 -26.64 -0.16 -1.16 16 6 C -0.09 -0.84 5.84 -26.94 -0.16 -1.00 16 7 C -0.12 -1.50 5.46 -90.90 -0.50 -2.00 16 8 H 0.11 1.53 7.90 -51.93 -0.41 1.12 16 9 C -0.18 -2.61 5.32 -91.78 -0.49 -3.10 16 10 H 0.12 1.39 7.27 -51.93 -0.38 1.02 16 11 C 0.55 10.79 7.69 -10.99 -0.08 10.70 16 12 O -0.46 -11.35 10.42 5.53 0.06 -11.29 16 13 N -0.59 -10.96 6.26 31.22 0.20 -10.77 16 14 N -0.14 -3.20 7.94 32.13 0.26 -2.95 16 15 C 0.07 1.36 10.73 -14.71 -0.16 1.20 16 16 C -0.09 -1.71 5.88 -104.88 -0.62 -2.32 16 17 C -0.09 -1.33 9.79 -39.17 -0.38 -1.71 16 18 C -0.16 -2.24 10.03 -39.61 -0.40 -2.64 16 19 C -0.10 -1.55 10.03 -39.52 -0.40 -1.95 16 20 C -0.15 -3.03 9.98 -39.45 -0.39 -3.43 16 21 C 0.18 4.18 5.61 -38.61 -0.22 3.96 16 22 O -0.26 -7.05 6.96 0.57 0.00 -7.04 16 23 C -0.34 -10.25 8.98 30.88 0.28 -9.98 16 24 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 25 C 0.08 2.43 5.38 -17.52 -0.09 2.34 16 26 N -0.91 -29.18 13.96 55.48 0.77 -28.40 16 27 Si 0.92 26.49 26.07 -169.99 -4.43 22.06 16 28 H -0.31 -8.59 7.11 56.52 0.40 -8.19 16 29 H -0.29 -8.20 7.11 56.52 0.40 -7.80 16 30 H -0.27 -7.89 7.11 56.52 0.40 -7.49 16 31 H 0.07 1.58 7.41 -51.93 -0.38 1.19 16 32 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.07 1.40 6.47 -51.93 -0.34 1.06 16 34 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 38 H 0.07 0.58 8.04 -51.93 -0.42 0.17 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 42 H 0.37 5.05 8.67 -182.59 -1.58 3.47 16 43 H 0.10 1.47 8.03 -52.49 -0.42 1.05 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 47 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 48 H 0.27 8.15 8.31 -40.82 -0.34 7.81 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -37.24 387.36 -9.97 -47.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.49 Total: 1.83 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -4.17 Total: -16.48 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.23 Total: -42.12 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.06 Total: -18.33 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.43 Total: 22.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.24 -9.97 -47.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004544675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.944 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds