Wall clock time and date at job start Tue Mar 31 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46989 * 2 1 4 4 C 1.46505 * 119.99473 * 274.61622 * 3 2 1 5 5 C 1.52999 * 109.47260 * 276.97770 * 4 3 2 6 6 C 1.34774 * 120.00402 * 94.62321 * 3 2 1 7 7 O 1.21614 * 119.99873 * 5.97259 * 6 3 2 8 8 C 1.47291 * 119.99980 * 185.97744 * 6 3 2 9 9 C 1.37957 * 126.80631 * 332.17320 * 8 6 3 10 10 N 1.34166 * 107.88586 * 180.14969 * 9 8 6 11 11 C 1.46498 * 125.16190 * 179.88171 * 10 9 8 12 12 C 1.50703 * 109.46986 * 124.72098 * 11 10 9 13 13 H 1.07999 * 120.00283 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99599 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00268 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47277 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47301 * 119.99640 * 16 14 12 19 19 H 1.48501 * 109.47180 * 239.99618 * 16 14 12 20 20 N 1.39766 * 109.67221 * 359.61225 * 10 9 8 21 21 C 1.31371 * 109.08343 * 0.24689 * 20 10 9 22 22 C 1.48286 * 126.51561 * 180.02562 * 21 20 10 23 23 C 1.39384 * 120.12535 * 144.69612 * 22 21 20 24 24 C 1.38009 * 119.87487 * 179.79067 * 23 22 21 25 25 C 1.38334 * 120.12266 * 0.48588 * 24 23 22 26 26 C 1.50701 * 119.87472 * 179.72455 * 25 24 23 27 27 C 1.38325 * 120.24998 * 359.74385 * 25 24 23 28 28 C 1.38004 * 120.13138 * 0.02562 * 27 25 24 29 29 H 1.08992 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47172 * 300.00562 * 1 2 3 31 31 H 1.09006 * 109.46670 * 60.00444 * 1 2 3 32 32 H 1.08999 * 109.47172 * 239.99437 * 2 1 3 33 33 H 1.08999 * 109.46966 * 119.99351 * 2 1 3 34 34 H 1.08995 * 109.46949 * 36.98479 * 4 3 2 35 35 H 1.09001 * 109.46712 * 156.97854 * 4 3 2 36 36 H 1.09001 * 109.47314 * 300.00110 * 5 4 3 37 37 H 1.09001 * 109.47189 * 60.00376 * 5 4 3 38 38 H 1.09004 * 109.46826 * 180.02562 * 5 4 3 39 39 H 1.08001 * 126.06285 * 0.04371 * 9 8 6 40 40 H 1.08998 * 109.46896 * 244.71377 * 11 10 9 41 41 H 1.08997 * 109.47278 * 4.71848 * 11 10 9 42 42 H 0.97000 * 120.00222 * 179.97438 * 15 14 12 43 43 H 1.08002 * 120.06292 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.93980 * 180.23251 * 24 23 22 45 45 H 1.08998 * 109.46913 * 270.02032 * 26 25 24 46 46 H 1.08998 * 109.46627 * 30.01758 * 26 25 24 47 47 H 1.08997 * 109.46890 * 150.02171 * 26 25 24 48 48 H 1.08003 * 119.93501 * 179.97438 * 27 25 24 49 49 H 1.07996 * 120.06733 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1662 2.1058 -1.2647 5 6 3.5059 1.7416 -1.9076 6 6 2.3317 1.9853 1.1633 7 8 2.3135 1.3521 2.2015 8 6 2.6960 3.4124 1.1774 9 6 3.2731 4.1282 0.1489 10 7 3.4434 5.3905 0.5704 11 6 4.0301 6.4731 -0.2234 12 6 3.0687 7.6323 -0.2800 13 1 2.1158 7.5688 0.2243 14 6 3.4057 8.7739 -0.9759 15 7 4.5663 8.8514 -1.5897 16 14 2.2138 10.2105 -1.0467 17 1 0.9869 9.8741 -0.2809 18 1 2.8528 11.4135 -0.4552 19 1 1.8541 10.4860 -2.4609 20 7 2.9703 5.5174 1.8794 21 6 2.5123 4.3548 2.2851 22 6 1.9212 4.0534 3.6113 23 6 0.8743 3.1396 3.7191 24 6 0.3309 2.8597 4.9564 25 6 0.8165 3.4917 6.0870 26 6 0.2148 3.1865 7.4346 27 6 1.8521 4.4031 5.9853 28 6 2.4064 4.6872 4.7539 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.3538 1.8316 -1.9376 35 1 2.1341 3.1786 -1.0747 36 1 4.3184 2.0159 -1.2346 37 1 3.5381 0.6688 -2.0976 38 1 3.6161 2.2811 -2.8483 39 1 3.5420 3.7408 -0.8227 40 1 4.9630 6.7971 0.2377 41 1 4.2288 6.1162 -1.2339 42 1 4.8032 9.6545 -2.0795 43 1 0.4911 2.6492 2.8364 44 1 -0.4778 2.1489 5.0417 45 1 -0.6108 3.8715 7.6273 46 1 -0.1542 2.1609 7.4437 47 1 0.9743 3.3064 8.2071 48 1 2.2271 4.8939 6.8713 49 1 3.2146 5.3993 4.6756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:13 Heat of formation + Delta-G solvation = 63.590059 kcal Electronic energy + Delta-G solvation = -29910.284082 eV Core-core repulsion = 26031.962304 eV Total energy + Delta-G solvation = -3878.321778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.84137 -39.10194 -38.81380 -36.03641 -34.03293 -33.00602 -32.51248 -31.23651 -30.70373 -29.92248 -29.21694 -27.75786 -26.25540 -23.90044 -23.64061 -23.05453 -22.45708 -21.55103 -20.75269 -19.79980 -18.72352 -16.96385 -16.72812 -16.34554 -15.96842 -15.40690 -15.21789 -15.00501 -14.72230 -14.39527 -14.15285 -14.00038 -13.81504 -13.65117 -13.32074 -13.17467 -12.98917 -12.69272 -12.62498 -12.38800 -12.31768 -12.16599 -12.09872 -11.90370 -11.76178 -11.62505 -11.15200 -11.09969 -11.02943 -10.99570 -10.93282 -10.74226 -10.37011 -10.20000 -9.84134 -9.49893 -9.07193 -8.73413 -8.64798 -8.54444 -8.20293 -7.67372 -6.35976 -4.41773 1.34978 1.74434 2.10939 2.82342 3.05675 3.16311 3.24740 3.28830 3.36678 3.65926 4.18248 4.22916 4.68812 4.87459 4.88915 4.99631 5.02185 5.05025 5.06728 5.10559 5.28601 5.28711 5.32119 5.38571 5.44118 5.45532 5.58311 5.61062 5.65412 5.73074 5.76129 5.80666 5.84936 5.90706 5.95922 6.01940 6.08505 6.17612 6.26642 6.34303 6.49583 6.67541 6.70624 6.81815 6.86550 6.90735 7.09155 7.27044 7.51700 7.58069 7.70712 7.73795 8.32536 8.55174 8.66533 9.25098 10.72975 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007613 B = 0.004231 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.877233 B = 6615.786285 C = 9461.307400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.082 3.918 5 C -0.179 4.179 6 C 0.601 3.399 7 O -0.541 6.541 8 C -0.308 4.308 9 C 0.080 3.920 10 N -0.312 5.312 11 C 0.250 3.750 12 C -0.532 4.532 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.893 5.893 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.259 5.259 21 C 0.133 3.867 22 C -0.003 4.003 23 C -0.062 4.062 24 C -0.126 4.126 25 C -0.088 4.088 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.087 4.087 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.187 0.813 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.268 0.732 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -15.503 4.275 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.349 5.349 4 C -0.041 4.041 5 C -0.237 4.237 6 C 0.392 3.608 7 O -0.419 6.419 8 C -0.324 4.324 9 C -0.072 4.072 10 N -0.088 5.088 11 C 0.133 3.867 12 C -0.570 4.570 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.080 5.080 21 C -0.034 4.034 22 C -0.005 4.005 23 C -0.081 4.081 24 C -0.144 4.144 25 C -0.089 4.089 26 C -0.168 4.168 27 C -0.146 4.146 28 C -0.107 4.107 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.204 0.796 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.903 -14.322 4.898 16.247 hybrid contribution -0.491 0.070 -0.815 0.954 sum -6.394 -14.252 4.083 16.146 Atomic orbital electron populations 1.22136 0.96237 1.01800 1.02340 1.21318 0.94003 0.82703 1.02952 1.47803 1.66716 1.13934 1.06402 1.22067 0.97649 0.99165 0.85214 1.22292 0.97766 1.02354 1.01265 1.17332 0.75441 0.85354 0.82711 1.90743 1.53815 1.65585 1.31771 1.20911 1.20980 0.94717 0.95804 1.23527 0.98685 0.86066 0.98938 1.49279 1.41576 1.08413 1.09580 1.19928 0.94815 0.82881 0.89081 1.21238 1.03339 0.98812 1.33643 0.91065 1.24926 0.95674 0.98586 0.94642 1.69915 1.20919 1.29111 1.33127 0.86268 0.80883 0.81488 0.77903 1.19440 1.20568 1.20682 1.77439 1.16385 1.19897 0.94270 1.21673 0.98773 0.89967 0.92962 1.17667 0.96124 0.97704 0.89040 1.21012 0.94445 0.95077 0.97607 1.20815 1.00846 1.00807 0.91925 1.19908 0.96562 0.97045 0.95359 1.20761 1.00603 1.01688 0.93718 1.20849 0.97409 0.99129 0.97250 1.21198 0.99546 0.98414 0.91516 0.91896 0.92306 0.92668 0.91172 0.89598 0.90712 0.88131 0.91941 0.92121 0.91012 0.79623 0.93123 0.92394 0.92225 0.86271 0.86330 0.91441 0.91793 0.91777 0.86171 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.11 1.22 6.24 -4.04 -0.03 1.19 16 3 N -0.61 -8.09 2.48 -175.00 -0.43 -8.52 16 4 C 0.08 0.91 5.66 -4.04 -0.02 0.89 16 5 C -0.18 -1.72 9.18 37.16 0.34 -1.38 16 6 C 0.60 10.17 6.70 -12.58 -0.08 10.09 16 7 O -0.54 -10.33 14.00 5.27 0.07 -10.25 16 8 C -0.31 -5.73 5.84 -102.95 -0.60 -6.34 16 9 C 0.08 1.45 8.94 -16.63 -0.15 1.30 16 10 N -0.31 -6.76 3.62 -62.04 -0.22 -6.98 16 11 C 0.25 5.93 6.21 -5.19 -0.03 5.90 16 12 C -0.53 -14.07 9.21 -34.44 -0.32 -14.39 16 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 16 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.26 -5.86 12.27 34.57 0.42 -5.44 16 21 C 0.13 2.73 6.93 -80.56 -0.56 2.17 16 22 C 0.00 -0.06 5.66 -104.91 -0.59 -0.66 16 23 C -0.06 -1.05 7.99 -39.24 -0.31 -1.36 16 24 C -0.13 -1.82 9.68 -39.63 -0.38 -2.20 16 25 C -0.09 -1.19 5.88 -104.55 -0.62 -1.80 16 26 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 27 C -0.13 -1.84 9.68 -39.64 -0.38 -2.22 16 28 C -0.09 -1.49 9.76 -39.24 -0.38 -1.87 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 33 H 0.09 1.04 7.22 -51.93 -0.37 0.67 16 34 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.10 1.30 4.14 -51.93 -0.22 1.09 16 36 H 0.06 0.68 7.29 -51.93 -0.38 0.30 16 37 H 0.06 0.52 7.99 -51.93 -0.41 0.11 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.19 2.69 4.10 -52.49 -0.21 2.47 16 40 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.12 2.05 6.50 -52.49 -0.34 1.71 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 47 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 48 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 49 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -30.94 402.44 -9.24 -40.18 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.38 Total: 3.75 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.48 Total: -11.02 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.50 Total: -44.38 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.94 -9.24 -40.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.765 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds