Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.38535 * 126.38813 * 90.00208 * 10 9 7 12 12 C 1.38650 * 133.87808 * 359.97438 * 11 10 9 13 13 C 1.37982 * 119.85467 * 179.97438 * 12 11 10 14 14 C 1.38701 * 120.43219 * 0.02694 * 13 12 11 15 15 C 1.37696 * 120.49548 * 359.97438 * 14 13 12 16 16 C 1.39728 * 119.77747 * 359.95962 * 15 14 13 17 17 N 1.35870 * 133.37478 * 180.02562 * 16 15 14 18 18 C 1.31062 * 109.61806 * 179.78535 * 17 16 15 19 19 S 1.76196 * 125.07582 * 180.26667 * 18 17 16 20 20 C 1.81000 * 100.00200 * 0.14804 * 19 18 17 21 21 C 1.50705 * 109.47269 * 179.97438 * 20 19 18 22 22 C 1.38263 * 119.98641 * 269.72689 * 21 20 19 23 23 C 1.38223 * 120.05087 * 179.72255 * 22 21 20 24 24 C 1.38221 * 120.02489 * 0.54699 * 23 22 21 25 25 C 1.38439 * 119.97300 * 359.72630 * 24 23 22 26 26 F 1.35097 * 120.02452 * 180.02562 * 25 24 23 27 27 C 1.38172 * 119.98601 * 89.99557 * 21 20 19 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.08003 * 120.07407 * 0.02562 * 12 11 10 32 32 H 1.08000 * 119.78526 * 180.02562 * 13 12 11 33 33 H 1.07994 * 119.75403 * 179.97438 * 14 13 12 34 34 H 1.07998 * 120.11231 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47262 * 299.99812 * 20 19 18 36 36 H 1.09001 * 109.47539 * 59.99811 * 20 19 18 37 37 H 1.07999 * 119.97377 * 359.97438 * 22 21 20 38 38 H 1.08001 * 119.98571 * 180.27085 * 23 22 21 39 39 H 1.07995 * 120.01142 * 179.74240 * 24 23 22 40 40 H 1.08001 * 120.01660 * 359.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7368 -4.2424 1.1023 12 6 2.5846 -4.0700 2.4696 13 6 3.2750 -4.8826 3.3453 14 6 4.1216 -5.8717 2.8671 15 6 4.2848 -6.0569 1.5124 16 6 3.5918 -5.2433 0.6124 17 7 3.5438 -5.1823 -0.7441 18 6 2.7236 -4.2289 -1.1130 19 16 2.3524 -3.8019 -2.7817 20 6 3.3820 -5.0098 -3.6517 21 6 3.2208 -4.8287 -5.1391 22 6 2.2405 -5.5283 -5.8183 23 6 2.0877 -5.3588 -7.1815 24 6 2.9224 -4.4981 -7.8693 25 6 3.9079 -3.8013 -7.1913 26 9 4.7240 -2.9594 -7.8624 27 6 4.0563 -3.9677 -5.8245 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.9265 -3.3019 2.8483 32 1 3.1553 -4.7477 4.4102 33 1 4.6569 -6.5012 3.5624 34 1 4.9453 -6.8292 1.1468 35 1 4.4266 -4.8609 -3.3783 36 1 3.0738 -6.0176 -3.3733 37 1 1.5910 -6.2046 -5.2825 38 1 1.3188 -5.9025 -7.7102 39 1 2.8055 -4.3690 -8.9351 40 1 4.8246 -3.4243 -5.2945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005264879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = 41.725508 kcal Electronic energy + Delta-G solvation = -25434.732957 eV Core-core repulsion = 21641.203870 eV Total energy + Delta-G solvation = -3793.529087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.00525 -41.31965 -39.27512 -36.74637 -34.20930 -33.01138 -32.35413 -30.72941 -29.88388 -28.98650 -27.34132 -27.19111 -23.43625 -23.19078 -22.90479 -21.86925 -21.42174 -20.03663 -17.67671 -16.91871 -16.80266 -16.54871 -16.45274 -16.31236 -16.00492 -15.73633 -14.92840 -14.77991 -14.55648 -14.31605 -13.81742 -13.69079 -13.51390 -13.34948 -13.22295 -12.68669 -12.54774 -12.23994 -11.97403 -11.91081 -11.59089 -11.50421 -11.26663 -11.22571 -10.97208 -10.88244 -10.45816 -10.35313 -10.22931 -9.52665 -9.37743 -9.11187 -8.82615 -8.72276 -8.60706 -7.54582 -7.04192 -6.34268 -4.43280 0.71883 1.01472 1.37445 1.69261 2.03965 2.35901 3.17450 3.19242 3.23246 3.28131 3.46723 3.65611 4.02614 4.23511 4.34394 4.40243 4.56106 4.83373 4.92307 4.99481 5.00199 5.09869 5.25318 5.34658 5.43694 5.51028 5.74325 5.77395 5.86168 5.87614 5.91836 5.93559 6.08960 6.10639 6.27096 6.37816 6.68925 6.73353 6.82582 6.91532 7.00603 7.22088 7.33843 7.54259 7.74612 7.75640 8.25697 8.61724 9.24493 10.73304 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.008390 B = 0.003759 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.468216 B = 7446.649304 C = 9878.214472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.237 3.763 10 N -0.440 5.440 11 C 0.061 3.939 12 C -0.091 4.091 13 C -0.122 4.122 14 C -0.134 4.134 15 C -0.078 4.078 16 C 0.051 3.949 17 N -0.519 5.519 18 C 0.258 3.742 19 S 0.030 5.970 20 C -0.077 4.077 21 C -0.043 4.043 22 C -0.112 4.112 23 C -0.091 4.091 24 C -0.152 4.152 25 C 0.098 3.902 26 F -0.140 7.140 27 C -0.135 4.135 28 H 0.270 0.730 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -11.604 -8.217 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.053 4.053 12 C -0.112 4.112 13 C -0.142 4.142 14 C -0.155 4.155 15 C -0.099 4.099 16 C -0.072 4.072 17 N -0.245 5.245 18 C -0.116 4.116 19 S 0.264 5.736 20 C -0.225 4.225 21 C -0.045 4.045 22 C -0.132 4.132 23 C -0.109 4.109 24 C -0.172 4.172 25 C 0.079 3.921 26 F -0.118 7.118 27 C -0.155 4.155 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.749 -10.948 -9.213 14.792 hybrid contribution 0.872 0.861 1.046 1.612 sum 4.621 -10.087 -8.167 13.777 Atomic orbital electron populations 1.69906 1.06064 1.27954 1.48625 1.24898 0.94939 0.99444 0.94076 0.86431 0.79543 0.81784 0.79131 1.19713 1.20826 1.19896 1.21185 0.93621 0.89420 1.53715 0.91765 1.19834 0.86767 0.81518 0.99996 1.45995 1.36235 1.27916 1.02469 1.18986 0.99691 0.96790 0.89795 1.20066 1.01399 1.00522 0.89236 1.20748 0.98224 0.96472 0.98768 1.20726 1.00672 0.99630 0.94467 1.20072 0.99545 0.98821 0.91458 1.19040 1.00035 0.98055 0.90076 1.70857 1.21626 1.20797 1.11211 1.25160 0.97060 0.94529 0.94870 1.86214 1.56531 1.43215 0.87640 1.22464 1.04646 1.02962 0.92448 1.19126 0.95594 0.96300 0.93433 1.21187 0.97646 0.99900 0.94451 1.20991 0.98444 0.97382 0.94063 1.21181 0.96257 0.98737 1.00999 1.17640 0.91722 0.92454 0.90286 1.91506 1.71067 1.68927 1.80319 1.21107 1.01711 1.00165 0.92564 0.92065 0.93205 0.92822 0.85813 0.85937 0.86122 0.86211 0.87545 0.87484 0.84782 0.84728 0.84741 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.24 5.88 5.70 -5.20 -0.03 5.85 16 10 N -0.44 -10.02 2.82 -115.61 -0.33 -10.35 16 11 C 0.06 1.30 6.87 -83.84 -0.58 0.73 16 12 C -0.09 -1.72 10.04 -39.52 -0.40 -2.11 16 13 C -0.12 -1.87 10.03 -39.50 -0.40 -2.26 16 14 C -0.13 -1.95 10.01 -39.61 -0.40 -2.35 16 15 C -0.08 -1.30 10.10 -39.22 -0.40 -1.70 16 16 C 0.05 1.02 7.22 -84.68 -0.61 0.41 16 17 N -0.52 -10.58 10.57 -10.90 -0.12 -10.70 16 18 C 0.26 5.40 7.93 -88.43 -0.70 4.69 16 19 S 0.03 0.53 21.52 -107.50 -2.31 -1.79 16 20 C -0.08 -1.03 5.28 36.01 0.19 -0.84 16 21 C -0.04 -0.51 5.13 -104.63 -0.54 -1.04 16 22 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 23 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 24 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 25 C 0.10 1.14 7.30 -39.42 -0.29 0.86 16 26 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 27 C -0.13 -1.63 9.68 -39.52 -0.38 -2.01 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.37 7.67 -51.93 -0.40 0.98 16 31 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.45 8.09 -51.92 -0.42 1.03 16 36 H 0.11 1.36 8.08 -51.92 -0.42 0.94 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -29.87 368.80 -12.15 -42.02 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.59 Total: 2.26 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -6.12 Total: -17.40 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.30 Total: -44.76 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.31 Total: -1.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.87 -12.15 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005264879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.747 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds