Wall clock time and date at job start Tue Mar 31 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99954 * 2 1 4 4 H 1.48504 * 109.46802 * 269.99623 * 3 2 1 5 5 H 1.48496 * 109.47299 * 29.99285 * 3 2 1 6 6 H 1.48490 * 109.47391 * 149.99573 * 3 2 1 7 7 C 1.38677 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99883 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.76201 * 100.00292 * 179.97438 * 9 7 2 11 11 N 1.31673 * 126.39542 * 359.97438 * 10 9 7 12 12 N 1.28514 * 110.06426 * 179.97438 * 11 10 9 13 13 C 1.31532 * 109.98895 * 0.02562 * 12 11 10 14 14 C 1.47717 * 126.45358 * 179.97438 * 13 12 11 15 15 C 1.40067 * 120.93064 * 162.22922 * 14 13 12 16 16 C 1.37901 * 118.98352 * 179.70804 * 15 14 13 17 17 N 1.31966 * 120.90534 * 0.57939 * 16 15 14 18 18 C 1.31970 * 122.07748 * 359.71613 * 17 16 15 19 19 C 1.37891 * 120.90772 * 359.97438 * 18 17 16 20 20 N 1.36849 * 126.39939 * 180.28524 * 10 9 7 21 21 C 1.40198 * 127.17924 * 0.02817 * 20 10 9 22 22 C 1.38840 * 120.04312 * 111.98000 * 21 20 10 23 23 C 1.38104 * 119.95639 * 179.76356 * 22 21 20 24 24 C 1.38482 * 120.04340 * 0.49523 * 23 22 21 25 25 F 1.35099 * 119.96036 * 179.74096 * 24 23 22 26 26 C 1.38490 * 120.08061 * 359.76289 * 24 23 22 27 27 C 1.38096 * 120.04625 * 359.97438 * 26 24 23 28 28 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.50859 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.54623 * 180.31770 * 16 15 14 31 31 H 1.07996 * 119.54295 * 179.97438 * 18 17 16 32 32 H 1.07999 * 120.50632 * 179.97438 * 19 18 17 33 33 H 1.08002 * 120.02102 * 359.97438 * 22 21 20 34 34 H 1.07999 * 119.97909 * 180.23373 * 23 22 21 35 35 H 1.08005 * 119.97537 * 179.97438 * 26 24 23 36 36 H 1.08001 * 120.02259 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0096 -1.2010 0.0005 8 1 3.0896 -1.2010 0.0010 9 16 1.1286 -2.7269 0.0005 10 6 2.4784 -3.8596 0.0005 11 7 3.7582 -3.5499 0.0001 12 7 4.4706 -4.6194 0.0008 13 6 3.6911 -5.6789 0.0012 14 6 4.1280 -7.0900 0.0015 15 6 3.2481 -8.1160 0.3686 16 6 3.6965 -9.4199 0.3487 17 7 4.9374 -9.7047 0.0015 18 6 5.8005 -8.7686 -0.3454 19 6 5.4355 -7.4389 -0.3598 20 7 2.3924 -5.2253 -0.0049 21 6 1.2244 -6.0007 -0.0122 22 6 0.8982 -6.7557 -1.1308 23 6 -0.2503 -7.5227 -1.1341 24 6 -1.0817 -7.5310 -0.0267 25 9 -2.2074 -8.2778 -0.0338 26 6 -0.7607 -6.7744 1.0880 27 6 0.3897 -6.0104 1.0972 28 1 -0.4850 0.8400 -0.0004 29 1 2.2326 -7.8898 0.6586 30 1 3.0242 -10.2186 0.6251 31 1 6.8064 -9.0478 -0.6219 32 1 6.1473 -6.6781 -0.6444 33 1 1.5440 -6.7459 -1.9964 34 1 -0.5024 -8.1130 -2.0026 35 1 -1.4105 -6.7818 1.9506 36 1 0.6398 -5.4208 1.9668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005590637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:51 Heat of formation + Delta-G solvation = 98.048663 kcal Electronic energy + Delta-G solvation = -25898.651814 eV Core-core repulsion = 22004.024740 eV Total energy + Delta-G solvation = -3894.627075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.065 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.13787 -42.47318 -39.96312 -39.26451 -34.57203 -33.32470 -32.80478 -31.54107 -31.30397 -29.46250 -29.33667 -25.88714 -24.48781 -23.87200 -23.35166 -23.21012 -21.64344 -20.83912 -18.85642 -17.92464 -17.67700 -16.87299 -16.61307 -16.21440 -15.97637 -15.70497 -15.36919 -15.21773 -15.05948 -14.68911 -13.97999 -13.90898 -13.88102 -13.76353 -13.47424 -13.30534 -13.12204 -12.60202 -11.79577 -11.60296 -11.48649 -11.25226 -11.20854 -10.92187 -10.69676 -10.41457 -10.28210 -10.14363 -9.65060 -9.54138 -9.46907 -9.28228 -9.03547 -8.85729 -8.70818 -6.95918 -6.60973 -4.36693 0.57254 0.76784 0.89142 1.04463 2.13766 2.26483 2.95882 3.11607 3.16197 3.17869 3.24578 3.29043 3.81265 3.89370 3.95097 4.15712 4.33092 4.44699 4.54166 4.65105 4.83873 4.86861 4.88880 4.91241 5.00717 5.03761 5.32130 5.46348 5.55907 5.58409 5.71925 5.75088 5.78788 5.84254 5.86170 6.10528 6.29340 6.37499 6.44515 6.53143 7.20280 7.43707 7.83550 8.22920 8.90906 9.11041 10.46793 Molecular weight = 342.06amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.004143 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.355314 B = 6756.739219 C = 9091.626876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.079 3.921 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.107 0.893 9 S 0.165 5.835 10 C 0.184 3.816 11 N -0.300 5.300 12 N -0.249 5.249 13 C 0.164 3.836 14 C 0.056 3.944 15 C -0.169 4.169 16 C 0.104 3.896 17 N -0.488 5.488 18 C 0.102 3.898 19 C -0.140 4.140 20 N -0.435 5.435 21 C 0.116 3.884 22 C -0.073 4.073 23 C -0.141 4.141 24 C 0.110 3.890 25 F -0.135 7.135 26 C -0.138 4.138 27 C -0.070 4.070 28 H 0.276 0.724 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -17.031 -0.003 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.690 4.690 8 H 0.125 0.875 9 S 0.400 5.600 10 C -0.183 4.183 11 N -0.146 5.146 12 N -0.091 5.091 13 C -0.101 4.101 14 C 0.045 3.955 15 C -0.191 4.191 16 C -0.052 4.052 17 N -0.198 5.198 18 C -0.055 4.055 19 C -0.163 4.163 20 N -0.130 5.130 21 C 0.025 3.975 22 C -0.093 4.093 23 C -0.161 4.161 24 C 0.090 3.910 25 F -0.113 7.113 26 C -0.157 4.157 27 C -0.090 4.090 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.293 -16.988 -0.002 16.990 hybrid contribution 0.065 1.375 -0.025 1.377 sum -0.227 -15.613 -0.027 15.614 Atomic orbital electron populations 1.69928 1.06130 1.28785 1.46025 1.25089 0.95197 0.99748 0.93104 0.85897 0.79653 0.79734 0.78870 1.19782 1.20540 1.18868 1.23286 0.97388 0.89100 1.59206 0.87471 1.83657 0.96906 0.95228 1.84236 1.28786 1.02491 0.84760 1.02251 1.74898 0.98619 1.17963 1.23134 1.74259 1.26382 0.94253 1.14167 1.22459 0.80328 0.94841 1.12464 1.17785 0.94030 0.87291 0.96377 1.22367 1.01044 0.93670 1.02050 1.22573 0.92440 0.94801 0.95426 1.67647 1.03286 1.37914 1.10989 1.22685 0.99138 0.88305 0.95331 1.22225 0.95630 0.98291 1.00105 1.43578 1.04633 1.05292 1.59511 1.17511 0.87914 0.96743 0.95360 1.21051 0.96372 0.94992 0.96837 1.20987 0.94644 1.01878 0.98552 1.17750 0.84164 0.93515 0.95554 1.91523 1.48752 1.74170 1.96876 1.21043 0.98156 0.97880 0.98645 1.21152 0.93027 0.97140 0.97650 0.91375 0.84783 0.82572 0.82264 0.83591 0.84395 0.83680 0.83467 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.48 13.22 55.48 0.73 -22.74 16 2 C 0.08 2.06 5.49 -17.48 -0.10 1.96 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.54 -14.54 9.37 30.89 0.29 -14.25 16 8 H 0.11 2.97 6.92 -52.48 -0.36 2.61 16 9 S 0.16 3.92 21.58 -107.50 -2.32 1.60 16 10 C 0.18 4.09 8.02 -87.72 -0.70 3.38 16 11 N -0.30 -7.17 11.03 30.81 0.34 -6.83 16 12 N -0.25 -5.32 12.09 32.60 0.39 -4.92 16 13 C 0.16 2.97 7.70 -153.60 -1.18 1.79 16 14 C 0.06 0.82 5.90 -104.65 -0.62 0.20 16 15 C -0.17 -2.07 8.72 -39.02 -0.34 -2.41 16 16 C 0.10 1.14 11.17 -17.62 -0.20 0.94 16 17 N -0.49 -5.86 10.35 -13.37 -0.14 -6.00 16 18 C 0.10 1.12 11.17 -17.62 -0.20 0.93 16 19 C -0.14 -1.78 9.81 -39.02 -0.38 -2.17 16 20 N -0.43 -7.92 2.85 -58.11 -0.17 -8.08 16 21 C 0.12 1.70 3.33 -83.58 -0.28 1.42 16 22 C -0.07 -0.89 8.64 -39.41 -0.34 -1.23 16 23 C -0.14 -1.43 10.02 -39.54 -0.40 -1.83 16 24 C 0.11 1.16 7.30 -39.40 -0.29 0.87 16 25 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16 26 C -0.14 -1.46 10.02 -39.54 -0.40 -1.86 16 27 C -0.07 -0.90 9.71 -39.41 -0.38 -1.29 16 28 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.13 1.56 5.12 -52.49 -0.27 1.29 16 30 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 1.80 8.04 -52.49 -0.42 1.38 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -30.79 342.36 -9.22 -40.00 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.73 Total: 1.24 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -5.51 Total: -13.53 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 1.16 Total: -48.57 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.32 Total: 1.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -9.22 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005590637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.053 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds