Wall clock time and date at job start Tue Mar 31 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36764 * 127.14329 * 2 1 4 4 N 1.30295 * 107.31750 * 180.02562 * 3 2 1 5 5 N 1.28521 * 110.08166 * 359.97438 * 4 3 2 6 6 C 1.31279 * 109.85855 * 0.02562 * 5 4 3 7 7 S 1.76207 * 126.48624 * 180.26061 * 6 5 4 8 8 C 1.80992 * 99.99775 * 359.68429 * 7 6 5 9 9 C 1.50697 * 109.47096 * 179.97438 * 8 7 6 10 10 N 1.29827 * 118.35198 * 359.97438 * 9 8 7 11 11 C 1.35629 * 121.62772 * 179.97438 * 10 9 8 12 12 C 1.39634 * 121.61335 * 180.02562 * 11 10 9 13 13 C 1.37712 * 119.69467 * 179.97438 * 12 11 10 14 14 C 1.38873 * 120.82145 * 0.02562 * 13 12 11 15 15 C 1.37794 * 120.57560 * 0.02562 * 14 13 12 16 16 C 1.39366 * 119.51754 * 359.97438 * 15 14 13 17 17 C 1.46964 * 121.91665 * 180.02562 * 16 15 14 18 18 O 1.21720 * 121.28628 * 359.97438 * 17 16 15 19 19 N 1.35347 * 117.42844 * 179.72968 * 17 16 15 20 20 C 1.37102 * 119.71653 * 180.22781 * 19 17 16 21 21 H 1.08005 * 119.99886 * 221.33933 * 20 19 17 22 22 C 1.39075 * 120.00125 * 41.33319 * 20 19 17 23 23 N 1.31259 * 119.99702 * 19.42533 * 22 20 19 24 24 Si 1.86795 * 120.00039 * 199.42585 * 22 20 19 25 25 H 1.48499 * 109.47149 * 60.00206 * 24 22 20 26 26 H 1.48506 * 109.47247 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47135 * 300.00178 * 24 22 20 28 28 H 1.09000 * 109.47147 * 269.99927 * 1 2 3 29 29 H 1.08997 * 109.47317 * 30.00207 * 1 2 3 30 30 H 1.08995 * 109.47246 * 150.00417 * 1 2 3 31 31 H 1.07997 * 126.33795 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47604 * 300.00075 * 8 7 6 33 33 H 1.09008 * 109.47321 * 60.00094 * 8 7 6 34 34 H 1.08002 * 120.15364 * 359.96212 * 12 11 10 35 35 H 1.07995 * 119.58976 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.71218 * 180.02562 * 14 13 12 37 37 H 1.08001 * 120.24331 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99468 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 7 3.5164 0.6483 -0.0006 5 7 3.5222 -0.6369 -0.0004 6 6 2.2895 -1.0884 -0.0002 7 16 1.7928 -2.7790 0.0065 8 6 3.4144 -3.5829 0.0027 9 6 3.2334 -5.0790 0.0083 10 7 2.0250 -5.5538 0.0152 11 6 1.7855 -6.8887 0.0200 12 6 0.4857 -7.3991 0.0268 13 6 0.2880 -8.7619 0.0311 14 6 1.3661 -9.6373 0.0291 15 6 2.6580 -9.1582 0.0234 16 6 2.8801 -7.7824 0.0191 17 6 4.2354 -7.2142 0.0124 18 8 5.2206 -7.9291 0.0108 19 7 4.3459 -5.8653 0.0029 20 6 5.5881 -5.2852 -0.0084 21 1 5.7839 -4.4163 0.6026 22 6 6.5961 -5.8155 -0.8064 23 7 6.2913 -6.6013 -1.8127 24 14 8.3835 -5.4097 -0.4462 25 1 8.7296 -5.8706 0.9223 26 1 9.2554 -6.0938 -1.4347 27 1 8.5864 -3.9417 -0.5403 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 1.9837 2.1256 -0.0004 32 1 3.9648 -3.2865 -0.8902 33 1 3.9715 -3.2814 0.8898 34 1 -0.3606 -6.7281 0.0290 35 1 -0.7179 -9.1548 0.0368 36 1 1.1903 -10.7030 0.0320 37 1 3.4924 -9.8439 0.0223 38 1 6.9944 -6.9709 -2.3696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005937302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:59 Heat of formation + Delta-G solvation = 107.862969 kcal Electronic energy + Delta-G solvation = -26600.731979 eV Core-core repulsion = 22764.564878 eV Total energy + Delta-G solvation = -3836.167101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 343.084 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.73246 -40.56196 -37.69500 -36.48844 -34.98385 -33.87359 -32.01790 -30.99410 -30.52380 -30.31260 -27.74441 -27.57747 -25.86567 -23.17712 -22.86375 -22.34064 -21.84868 -21.04858 -18.85053 -18.05297 -17.98408 -16.93939 -16.35878 -16.04297 -15.71259 -15.21785 -15.08899 -14.82337 -14.49532 -14.04225 -13.79697 -13.66331 -13.48979 -13.35178 -13.15471 -12.99385 -12.66915 -12.36596 -11.89035 -11.56183 -11.45008 -11.35509 -11.24871 -11.04582 -10.92926 -10.69395 -10.56254 -10.28495 -10.08398 -9.94360 -9.60380 -9.07313 -9.01437 -8.44091 -8.42687 -7.41312 -7.16151 -6.75754 -4.58876 1.23280 1.38674 1.59407 1.69971 2.30076 2.63566 2.91235 3.03909 3.10943 3.14621 3.16788 3.72626 3.87973 4.20174 4.41306 4.53213 4.58288 4.71025 4.84435 5.03065 5.12839 5.22188 5.28242 5.37427 5.49197 5.59457 5.62757 5.68717 5.83349 5.98291 6.03531 6.10786 6.37720 6.59978 6.69779 6.73880 6.96793 7.04155 7.04904 7.40634 7.52953 7.99862 8.36060 8.61740 8.70431 8.98742 9.39133 10.26630 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004644 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.826011 B = 6028.349500 C = 8922.606223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.472 5.472 3 C 0.146 3.854 4 N -0.289 5.289 5 N -0.296 5.296 6 C 0.144 3.856 7 S 0.079 5.921 8 C -0.041 4.041 9 C 0.367 3.633 10 N -0.571 5.571 11 C 0.174 3.826 12 C -0.131 4.131 13 C -0.088 4.088 14 C -0.175 4.175 15 C -0.037 4.037 16 C -0.208 4.208 17 C 0.522 3.478 18 O -0.495 6.495 19 N -0.340 5.340 20 C -0.383 4.383 21 H 0.113 0.887 22 C 0.080 3.920 23 N -0.796 5.796 24 Si 0.931 3.069 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.218 0.782 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 8.416 2.408 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.167 5.167 3 C -0.145 4.145 4 N -0.128 5.128 5 N -0.141 5.141 6 C -0.231 4.231 7 S 0.306 5.694 8 C -0.191 4.191 9 C 0.104 3.896 10 N -0.300 5.300 11 C 0.058 3.942 12 C -0.151 4.151 13 C -0.108 4.108 14 C -0.194 4.194 15 C -0.056 4.056 16 C -0.216 4.216 17 C 0.316 3.684 18 O -0.369 6.369 19 N -0.043 5.043 20 C -0.510 4.510 21 H 0.130 0.870 22 C -0.138 4.138 23 N -0.423 5.423 24 Si 0.754 3.246 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.189 1.189 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.235 0.765 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.989 7.730 2.217 15.277 hybrid contribution 1.250 0.236 -0.031 1.272 sum -11.739 7.965 2.186 14.354 Atomic orbital electron populations 1.22111 0.75104 1.05333 1.04300 1.46498 1.08778 1.05373 1.56056 1.26630 0.86810 0.94597 1.06420 1.73909 1.18325 1.03578 1.17006 1.74763 1.15745 1.02887 1.20659 1.27880 0.90175 0.98217 1.06807 1.86120 1.08883 0.82424 1.91943 1.22311 0.96927 0.90618 1.09240 1.21804 0.83356 0.91661 0.92783 1.67992 1.17764 1.13531 1.30732 1.18602 0.93019 0.87923 0.94693 1.20580 0.94800 0.94743 1.04966 1.20978 0.98394 0.93012 0.98415 1.20854 0.92295 0.99161 1.07104 1.20882 0.96951 0.93694 0.94093 1.20769 0.93394 0.95382 1.12007 1.18215 0.88603 0.81730 0.79843 1.90678 1.39690 1.58665 1.47829 1.42239 1.06479 1.05918 1.49667 1.19704 0.85631 1.16915 1.28717 0.86977 1.25433 1.01514 0.94259 0.92561 1.69798 1.36083 1.24995 1.11420 0.85940 0.80258 0.79111 0.79249 1.18981 1.20360 1.18903 0.89823 0.88964 0.88708 0.76527 0.85431 0.86392 0.85659 0.86398 0.86516 0.85772 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.09 59.84 0.66 1.14 16 2 N -0.47 -5.40 3.21 -125.59 -0.40 -5.80 16 3 C 0.15 1.67 12.80 -88.95 -1.14 0.53 16 4 N -0.29 -4.72 12.17 29.90 0.36 -4.36 16 5 N -0.30 -5.31 11.60 30.68 0.36 -4.95 16 6 C 0.14 2.19 8.07 -88.34 -0.71 1.47 16 7 S 0.08 1.21 20.71 -107.50 -2.23 -1.01 16 8 C -0.04 -0.75 4.35 36.00 0.16 -0.59 16 9 C 0.37 8.01 7.49 -154.87 -1.16 6.85 16 10 N -0.57 -11.91 8.77 -8.10 -0.07 -11.98 16 11 C 0.17 3.65 6.63 -84.50 -0.56 3.09 16 12 C -0.13 -2.26 10.03 -39.25 -0.39 -2.65 16 13 C -0.09 -1.34 10.00 -39.54 -0.40 -1.74 16 14 C -0.17 -2.84 10.02 -39.51 -0.40 -3.24 16 15 C -0.04 -0.74 9.68 -39.32 -0.38 -1.12 16 16 C -0.21 -4.77 5.89 -104.78 -0.62 -5.39 16 17 C 0.52 13.75 6.93 -12.47 -0.09 13.66 16 18 O -0.50 -14.29 14.29 5.17 0.07 -14.22 16 19 N -0.34 -8.53 2.68 -59.56 -0.16 -8.69 16 20 C -0.38 -9.67 8.23 -14.88 -0.12 -9.79 16 21 H 0.11 2.61 7.07 -52.48 -0.37 2.23 16 22 C 0.08 2.07 4.37 -17.49 -0.08 1.99 16 23 N -0.80 -21.89 11.55 55.50 0.64 -21.25 16 24 Si 0.93 20.04 29.59 -169.99 -5.03 15.01 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.62 7.86 -51.93 -0.41 0.21 16 31 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 2.48 8.04 -51.92 -0.42 2.06 16 33 H 0.12 2.13 7.59 -51.91 -0.39 1.74 16 34 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.12 2.46 7.83 -52.49 -0.41 2.05 16 38 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -34.02 346.71 -10.13 -44.15 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.67 Total: 3.66 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -5.22 Total: 4.22 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.73 Total: -57.03 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.23 Total: -1.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.02 -10.13 -44.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005937302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.009 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds