Wall clock time and date at job start Tue Mar 31 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00071 * 2 1 4 4 C 1.50707 * 109.47153 * 270.00126 * 3 2 1 5 5 O 1.21297 * 119.99563 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.39942 * 119.99799 * 175.96006 * 6 4 3 8 8 C 1.38681 * 120.11707 * 34.38985 * 7 6 4 9 9 C 1.38215 * 120.01772 * 179.97438 * 8 7 6 10 10 C 1.38392 * 120.25617 * 0.02738 * 9 8 7 11 11 C 1.38091 * 120.22500 * 359.97283 * 10 9 8 12 12 C 1.38989 * 119.97664 * 0.02562 * 11 10 9 13 13 S 1.76199 * 120.12408 * 180.02562 * 12 11 10 14 14 C 1.76201 * 99.99925 * 353.11271 * 13 12 11 15 15 H 1.08000 * 119.99974 * 5.09920 * 14 13 12 16 16 C 1.38688 * 119.99678 * 185.09953 * 14 13 12 17 17 N 1.31653 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46971 * 60.00434 * 18 16 14 20 20 H 1.48501 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47453 * 300.00355 * 18 16 14 22 22 C 1.39678 * 120.00019 * 180.02562 * 2 1 3 23 23 C 1.38908 * 120.07439 * 179.72437 * 22 2 1 24 24 C 1.38104 * 119.92775 * 179.76877 * 23 22 2 25 25 C 1.38285 * 120.06826 * 0.50440 * 24 23 22 26 26 C 1.38282 * 120.15539 * 359.75025 * 25 24 23 27 27 C 1.38114 * 120.07137 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.46733 * 90.00175 * 1 2 3 29 29 H 1.09001 * 109.46873 * 209.99750 * 1 2 3 30 30 H 1.08996 * 109.47241 * 330.00208 * 1 2 3 31 31 H 1.08998 * 109.47480 * 150.00228 * 3 2 1 32 32 H 1.09003 * 109.47287 * 29.99664 * 3 2 1 33 33 H 0.96998 * 120.00320 * 355.95432 * 6 4 3 34 34 H 1.08000 * 119.98619 * 0.26383 * 8 7 6 35 35 H 1.08003 * 119.87617 * 179.97438 * 9 8 7 36 36 H 1.07991 * 119.89241 * 179.97438 * 10 9 8 37 37 H 1.08001 * 120.00955 * 180.02562 * 11 10 9 38 38 H 0.97003 * 119.99851 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.03535 * 359.97438 * 23 22 2 40 40 H 1.07999 * 119.96599 * 180.25325 * 24 23 22 41 41 H 1.08001 * 119.92261 * 179.72258 * 25 24 23 42 42 H 1.07996 * 119.96913 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.03504 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 8 2.0549 1.0209 -2.3428 6 7 3.1117 2.8510 -1.6671 7 6 3.4191 3.2127 -2.9836 8 6 2.5456 2.8979 -4.0137 9 6 2.8510 3.2566 -5.3131 10 6 4.0275 3.9297 -5.5925 11 6 4.9047 4.2483 -4.5747 12 6 4.6070 3.8922 -3.2646 13 16 5.7232 4.2974 -1.9627 14 6 7.0743 4.9262 -2.9028 15 1 6.9825 5.0364 -3.9732 16 6 8.2556 5.2797 -2.2680 17 7 8.3677 5.1450 -0.9632 18 14 9.6883 5.9457 -3.2646 19 1 9.2706 7.1880 -3.9627 20 1 10.8253 6.2454 -2.3576 21 1 10.1083 4.9326 -4.2659 22 6 2.1634 -1.2096 -0.0005 23 6 3.5525 -1.2114 -0.0063 24 6 4.2400 -2.4092 -0.0020 25 6 3.5470 -3.6059 -0.0025 26 6 2.1641 -3.6078 -0.0021 27 6 1.4705 -2.4135 -0.0006 28 1 -0.3632 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.3757 3.4260 -0.9320 34 1 1.6243 2.3765 -3.7999 35 1 2.1694 3.0099 -6.1137 36 1 4.2605 4.2068 -6.6100 37 1 5.8216 4.7740 -4.7966 38 1 9.1941 5.3919 -0.5193 39 1 4.0943 -0.2772 -0.0108 40 1 5.3200 -2.4113 -0.0024 41 1 4.0870 -4.5412 -0.0036 42 1 1.6260 -4.5441 -0.0028 43 1 0.3905 -2.4156 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006651752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:52 Heat of formation + Delta-G solvation = 36.975796 kcal Electronic energy + Delta-G solvation = -26274.951918 eV Core-core repulsion = 22604.677174 eV Total energy + Delta-G solvation = -3670.274745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32850 -39.28810 -37.77657 -35.96036 -34.33334 -32.77564 -31.22114 -30.37892 -30.25112 -29.45095 -28.04696 -25.90916 -25.17616 -22.69102 -22.27284 -21.95831 -20.92643 -19.93208 -18.42314 -17.76407 -17.16085 -16.76216 -16.09359 -15.66985 -15.51995 -15.12956 -15.06445 -14.62911 -14.31912 -14.15210 -13.73806 -13.68709 -13.52337 -13.21575 -12.96670 -12.94880 -12.58794 -12.43398 -12.16480 -11.88377 -11.69549 -11.40332 -11.34587 -11.22460 -11.10493 -10.79093 -10.43638 -10.23952 -10.07663 -9.73406 -9.56771 -9.35610 -8.86025 -8.82151 -8.66374 -7.72884 -7.33310 -6.55515 -6.54938 -4.26130 1.50074 1.65017 1.85085 2.06987 2.77492 2.88237 3.03053 3.10624 3.14269 3.28848 3.53322 3.96039 3.97899 4.41897 4.75346 4.78715 4.84212 4.88626 5.00970 5.07187 5.10568 5.15270 5.26347 5.41478 5.51010 5.60289 5.61903 5.65255 5.66986 5.75754 5.86929 6.04141 6.16133 6.21232 6.27649 6.52961 6.55043 6.69526 6.81920 6.87515 6.88400 7.07496 7.14474 7.19619 7.42674 7.44139 7.66158 7.75498 8.10755 8.39796 8.93746 10.52224 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003082 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.133474 B = 9082.561906 C =10307.574738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.612 5.612 3 C 0.105 3.895 4 C 0.486 3.514 5 O -0.515 6.515 6 N -0.658 5.658 7 C 0.122 3.878 8 C -0.101 4.101 9 C -0.150 4.150 10 C -0.114 4.114 11 C -0.131 4.131 12 C -0.102 4.102 13 S 0.034 5.966 14 C -0.546 4.546 15 H 0.094 0.906 16 C 0.078 3.922 17 N -0.865 5.865 18 Si 0.924 3.076 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.270 1.270 22 C 0.223 3.777 23 C -0.191 4.191 24 C -0.071 4.071 25 C -0.182 4.182 26 C -0.077 4.077 27 C -0.196 4.196 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.410 0.590 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.274 0.726 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 -9.343 3.926 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.322 5.322 3 C -0.022 4.022 4 C 0.271 3.729 5 O -0.389 6.389 6 N -0.304 5.304 7 C 0.020 3.980 8 C -0.123 4.123 9 C -0.173 4.173 10 C -0.135 4.135 11 C -0.157 4.157 12 C -0.219 4.219 13 S 0.288 5.712 14 C -0.693 4.693 15 H 0.112 0.888 16 C -0.132 4.132 17 N -0.499 5.499 18 Si 0.749 3.251 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.195 1.195 22 C 0.123 3.877 23 C -0.213 4.213 24 C -0.090 4.090 25 C -0.201 4.201 26 C -0.096 4.096 27 C -0.218 4.218 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.246 0.754 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.317 -9.729 4.905 17.207 hybrid contribution 1.262 0.926 -1.727 2.331 sum -12.055 -8.804 3.178 15.262 Atomic orbital electron populations 1.21655 0.79113 1.02302 1.01627 1.45883 1.04786 1.01823 1.79727 1.21306 1.00076 0.87217 0.93649 1.21542 0.78281 0.80392 0.92691 1.90685 1.49259 1.53322 1.45658 1.43392 1.56742 1.22665 1.07613 1.17144 0.94279 1.02544 0.83997 1.20926 0.98901 1.00391 0.92039 1.20746 0.98128 1.02612 0.95854 1.20970 0.94763 0.99361 0.98374 1.21294 1.00782 1.02263 0.91360 1.22535 0.97284 1.01733 1.00394 1.83036 1.09855 1.71784 1.06504 1.23225 0.99197 1.50190 0.96738 0.88840 1.25076 0.98351 0.94409 0.95353 1.69982 1.27758 1.44030 1.08133 0.86117 0.79881 0.79567 0.79542 1.19484 1.20563 1.19481 1.17761 0.91147 0.85420 0.93419 1.20737 0.92191 0.98938 1.09393 1.20916 0.99628 0.91930 0.96511 1.20885 0.94266 0.97745 1.07251 1.20839 0.94235 0.97000 0.97492 1.20616 0.99440 0.91073 1.10676 0.92997 0.91209 0.91604 0.87185 0.87542 0.75425 0.85431 0.87070 0.87092 0.84443 0.91625 0.86184 0.86147 0.86678 0.86465 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.23 59.85 0.61 1.50 16 2 N -0.61 -7.29 2.50 -181.00 -0.45 -7.75 16 3 C 0.11 1.19 5.68 -5.19 -0.03 1.16 16 4 C 0.49 7.51 7.74 -10.98 -0.09 7.42 16 5 O -0.51 -9.68 13.85 5.54 0.08 -9.61 16 6 N -0.66 -10.80 5.02 -9.70 -0.05 -10.85 16 7 C 0.12 2.39 6.32 -83.44 -0.53 1.86 16 8 C -0.10 -1.89 8.69 -39.43 -0.34 -2.23 16 9 C -0.15 -2.62 10.04 -39.53 -0.40 -3.02 16 10 C -0.11 -2.06 10.03 -39.58 -0.40 -2.46 16 11 C -0.13 -2.74 9.26 -39.36 -0.36 -3.10 16 12 C -0.10 -2.21 6.12 -38.75 -0.24 -2.45 16 13 S 0.03 0.81 20.53 -107.50 -2.21 -1.40 16 14 C -0.55 -14.34 9.07 30.90 0.28 -14.06 16 15 H 0.09 2.36 4.83 -52.49 -0.25 2.11 16 16 C 0.08 2.05 5.49 -17.46 -0.10 1.95 16 17 N -0.87 -23.55 13.22 55.48 0.73 -22.82 16 18 Si 0.92 20.08 29.55 -169.99 -5.02 15.05 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C 0.22 2.97 6.55 -83.79 -0.55 2.43 16 23 C -0.19 -2.65 9.20 -39.38 -0.36 -3.02 16 24 C -0.07 -0.91 10.04 -39.61 -0.40 -1.31 16 25 C -0.18 -2.12 10.04 -39.55 -0.40 -2.52 16 26 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 27 C -0.20 -2.34 9.21 -39.38 -0.36 -2.71 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 6.20 -51.93 -0.32 0.22 16 30 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 31 H 0.11 1.16 6.21 -51.93 -0.32 0.84 16 32 H 0.11 0.86 7.89 -51.93 -0.41 0.45 16 33 H 0.41 6.00 7.96 -40.82 -0.32 5.68 16 34 H 0.13 2.36 6.20 -52.49 -0.33 2.03 16 35 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.14 2.96 4.95 -52.49 -0.26 2.70 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.12 1.67 6.15 -52.48 -0.32 1.35 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.20 6.14 -52.49 -0.32 0.88 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -31.81 370.91 -10.33 -42.14 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.94 Total: 11.44 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -4.05 Total: -21.81 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.23 Total: -41.41 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.21 Total: -1.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.81 -10.33 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006651752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.111 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds