Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35951 * 117.00188 * 2 1 4 4 C 1.38035 * 119.99502 * 359.97433 * 3 2 1 5 5 C 1.40053 * 119.83693 * 179.97438 * 4 3 2 6 6 C 1.46832 * 120.08714 * 180.29836 * 5 4 3 7 7 C 1.35295 * 119.99914 * 179.72987 * 6 5 4 8 8 C 1.41786 * 119.99904 * 180.02562 * 7 6 5 9 9 O 1.21782 * 119.99657 * 359.97438 * 8 7 6 10 10 C 1.47782 * 119.99996 * 179.97438 * 8 7 6 11 11 C 1.39671 * 120.16841 * 359.73174 * 10 8 7 12 12 C 1.37849 * 119.87685 * 179.67610 * 11 10 8 13 13 C 1.38477 * 120.21828 * 0.61625 * 12 11 10 14 14 C 1.38234 * 120.33871 * 359.67662 * 13 12 11 15 15 C 1.38294 * 120.11946 * 0.02562 * 14 13 12 16 16 F 1.35095 * 120.11001 * 180.02562 * 15 14 13 17 17 C 1.40118 * 119.82927 * 0.03009 * 5 4 3 18 18 C 1.37600 * 119.99620 * 359.97438 * 17 5 4 19 19 C 1.39099 * 120.16725 * 359.97438 * 18 17 5 20 20 O 1.35582 * 119.91766 * 179.97438 * 19 18 17 21 21 C 1.34738 * 116.99897 * 354.38785 * 20 19 18 22 22 H 1.07994 * 119.99720 * 5.05805 * 21 20 19 23 23 C 1.38747 * 119.99555 * 185.05981 * 21 20 19 24 24 N 1.31487 * 120.00289 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99484 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47336 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47140 * 120.00040 * 25 23 21 28 28 H 1.48504 * 109.46992 * 239.99738 * 25 23 21 29 29 H 1.08994 * 109.47093 * 299.99814 * 1 2 3 30 30 H 1.08996 * 109.46902 * 60.00024 * 1 2 3 31 31 H 1.08998 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.08478 * 0.02877 * 4 3 2 33 33 H 1.08000 * 119.99865 * 359.73158 * 6 5 4 34 34 H 1.08000 * 120.00221 * 359.97438 * 7 6 5 35 35 H 1.08003 * 120.06067 * 359.97438 * 11 10 8 36 36 H 1.08005 * 119.89175 * 180.32233 * 12 11 10 37 37 H 1.07997 * 119.82971 * 179.70039 * 13 12 11 38 38 H 1.07999 * 119.93988 * 180.02562 * 14 13 12 39 39 H 1.08002 * 119.99814 * 179.97438 * 17 5 4 40 40 H 1.08000 * 119.91722 * 180.02562 * 18 17 5 41 41 H 0.97005 * 120.00328 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3689 -0.0005 5 6 1.9337 3.6150 0.0000 6 6 1.1394 4.8499 0.0061 7 6 1.7588 6.0527 0.0121 8 6 0.9917 7.2451 0.0185 9 8 -0.2247 7.1866 0.0181 10 6 1.6683 8.5589 0.0257 11 6 3.0632 8.6301 0.0318 12 6 3.6881 9.8588 0.0317 13 6 2.9375 11.0225 0.0384 14 6 1.5565 10.9625 0.0385 15 6 0.9150 9.7374 0.0325 16 9 -0.4347 9.6790 0.0320 17 6 3.3334 3.6803 0.0005 18 6 4.0761 2.5219 0.0009 19 6 3.4410 1.2844 0.0014 20 8 4.1777 0.1462 0.0013 21 6 5.5130 0.2819 -0.1167 22 1 5.9572 1.2663 -0.1234 23 6 6.3173 -0.8430 -0.2296 24 7 5.7765 -2.0415 -0.2209 25 14 8.1685 -0.6548 -0.3940 26 1 8.5229 0.7872 -0.3777 27 1 8.8385 -1.3425 0.7390 28 1 8.6158 -1.2596 -1.6744 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2158 2.3139 -0.0005 33 1 0.0606 4.7980 0.0057 34 1 2.8376 6.1046 0.0129 35 1 3.6511 7.7241 0.0318 36 1 4.7667 9.9141 0.0312 37 1 3.4336 11.9817 0.0432 38 1 0.9774 11.8741 0.0434 39 1 3.8292 4.6398 0.0005 40 1 5.1548 2.5737 0.0017 41 1 6.3388 -2.8280 -0.2995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007007315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -69.062469 kcal Electronic energy + Delta-G solvation = -27453.514097 eV Core-core repulsion = 23180.135261 eV Total energy + Delta-G solvation = -4273.378836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.110 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -48.99293 -39.99895 -39.69237 -38.30487 -37.76442 -36.59581 -33.24477 -32.46678 -31.71902 -30.72872 -29.81831 -28.80092 -26.75603 -25.77468 -24.79512 -23.41647 -22.42880 -21.82834 -20.74526 -18.82980 -18.29420 -18.17240 -17.57006 -16.76801 -16.52338 -16.04306 -15.81068 -15.56379 -15.26557 -15.15205 -14.77881 -14.67669 -14.28190 -14.17250 -14.05535 -13.72061 -13.68208 -13.49461 -13.28141 -12.53587 -12.49027 -12.33636 -12.10649 -11.87623 -11.77251 -11.63401 -11.46837 -11.19115 -11.06952 -10.84351 -10.74400 -10.55612 -9.70901 -9.62351 -9.49162 -9.39945 -9.01847 -8.91869 -8.06292 -6.99434 -6.71570 -4.20755 0.23141 0.89206 1.01076 2.05214 2.34812 2.97595 3.00122 3.06785 3.10589 3.67425 3.75641 3.87404 3.91785 4.14253 4.38865 4.39195 4.60014 4.81038 4.83128 4.92511 4.95078 5.14023 5.15585 5.39332 5.47278 5.50247 5.53130 5.57700 5.63246 5.71156 5.79037 5.84098 5.89408 5.92637 6.02951 6.13416 6.37048 6.40270 6.51578 6.53526 6.78337 6.92963 7.00676 7.17858 7.39194 7.69175 7.74547 8.00949 8.71231 9.39528 10.43817 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.002367 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.903578 B =11824.342257 C =13933.239198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.178 4.178 6 C 0.057 3.943 7 C -0.310 4.310 8 C 0.425 3.575 9 O -0.474 6.474 10 C -0.188 4.188 11 C -0.047 4.047 12 C -0.145 4.145 13 C -0.068 4.068 14 C -0.172 4.172 15 C 0.148 3.852 16 F -0.119 7.119 17 C -0.051 4.051 18 C -0.228 4.228 19 C 0.151 3.849 20 O -0.142 6.142 21 C -0.389 4.389 22 H 0.100 0.900 23 C 0.041 3.959 24 N -0.840 5.840 25 Si 0.947 3.053 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 18.840 0.293 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.152 4.152 5 C -0.179 4.179 6 C 0.038 3.962 7 C -0.328 4.328 8 C 0.310 3.690 9 O -0.356 6.356 10 C -0.190 4.190 11 C -0.065 4.065 12 C -0.163 4.163 13 C -0.087 4.087 14 C -0.191 4.191 15 C 0.128 3.872 16 F -0.098 7.098 17 C -0.069 4.069 18 C -0.247 4.247 19 C 0.093 3.907 20 O -0.042 6.042 21 C -0.464 4.464 22 H 0.117 0.883 23 C -0.166 4.166 24 N -0.471 5.471 25 Si 0.770 3.230 26 H -0.187 1.187 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.049 18.060 0.296 18.511 hybrid contribution 0.562 0.337 -0.071 0.660 sum -3.487 18.397 0.225 18.726 Atomic orbital electron populations 1.22925 0.80082 1.03144 1.00451 1.86235 1.19642 1.26140 1.89699 1.18037 0.89363 0.84654 1.07339 1.20906 0.98643 0.90915 1.04759 1.18193 0.92875 0.91411 1.15409 1.22518 0.99197 0.91328 0.83141 1.22001 1.01037 0.92769 1.17035 1.18961 0.88438 0.88162 0.73429 1.90681 1.15747 1.89755 1.39388 1.20852 0.94991 0.94638 1.08537 1.21451 0.92443 0.98983 0.93585 1.21240 1.00772 0.92057 1.02253 1.21214 0.92761 0.99160 0.95524 1.21163 0.95721 0.96509 1.05697 1.17935 0.77404 0.93649 0.98170 1.91575 1.28211 1.97175 1.92794 1.20964 0.92447 0.97408 0.96108 1.20830 1.00763 0.90697 1.12419 1.18915 0.88258 0.87597 0.95906 1.83968 1.19862 1.26065 1.74314 1.21630 0.78289 0.95227 1.51287 0.88267 1.25463 1.01102 0.94104 0.95949 1.70040 1.36798 0.97923 1.42339 0.85558 0.79612 0.79225 0.78571 1.18720 1.19826 1.19821 0.93413 0.93401 0.88908 0.85786 0.85904 0.85407 0.83848 0.84717 0.84742 0.84396 0.86487 0.84396 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.32 10.28 -34.19 -0.35 -6.67 16 3 C 0.05 1.07 6.70 -39.13 -0.26 0.81 16 4 C -0.13 -2.33 8.78 -38.98 -0.34 -2.67 16 5 C -0.18 -2.98 5.87 -105.04 -0.62 -3.60 16 6 C 0.06 0.85 9.41 -37.16 -0.35 0.51 16 7 C -0.31 -4.27 8.73 -39.28 -0.34 -4.61 16 8 C 0.42 6.31 6.91 -34.33 -0.24 6.07 16 9 O -0.47 -8.44 15.11 5.12 0.08 -8.37 16 10 C -0.19 -2.36 5.88 -104.85 -0.62 -2.97 16 11 C -0.05 -0.44 9.43 -39.19 -0.37 -0.81 16 12 C -0.15 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.07 -0.49 10.04 -39.49 -0.40 -0.88 16 14 C -0.17 -1.54 10.01 -39.56 -0.40 -1.94 16 15 C 0.15 1.83 7.29 -38.95 -0.28 1.55 16 16 F -0.12 -1.74 15.55 2.25 0.04 -1.71 16 17 C -0.05 -0.86 9.40 -39.11 -0.37 -1.23 16 18 C -0.23 -4.53 9.14 -39.49 -0.36 -4.89 16 19 C 0.15 3.49 6.67 -38.73 -0.26 3.23 16 20 O -0.14 -3.88 9.52 -13.78 -0.13 -4.01 16 21 C -0.39 -10.13 9.48 30.92 0.29 -9.83 16 22 H 0.10 2.33 5.18 -52.49 -0.27 2.05 16 23 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 24 N -0.84 -23.27 13.67 55.48 0.76 -22.51 16 25 Si 0.95 18.94 29.55 -169.99 -5.02 13.91 16 26 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 29 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.12 1.83 6.28 -52.48 -0.33 1.50 16 33 H 0.12 1.80 7.45 -52.49 -0.39 1.41 16 34 H 0.13 1.49 4.24 -52.49 -0.22 1.26 16 35 H 0.14 1.12 6.20 -52.48 -0.33 0.80 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.59 6.15 -52.49 -0.32 1.27 16 40 H 0.14 2.65 5.62 -52.49 -0.29 2.36 16 41 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -32.17 361.15 -7.38 -39.55 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.78 Total: 4.73 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -4.41 Total: -20.37 kcal Atomic # 7 Polarization: -23.27 SS G_CDS: 0.76 Total: -22.51 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.41 Total: -19.04 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.17 -7.38 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007007315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.512 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds