Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48504 * 109.47171 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47223 * 120.00023 * 3 2 1 6 6 H 1.48504 * 109.47124 * 240.00318 * 3 2 1 7 7 C 1.38781 * 120.00033 * 179.72741 * 2 1 3 8 8 H 1.07997 * 120.00033 * 180.02562 * 7 2 1 9 9 O 1.34866 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.34797 * 117.00119 * 180.02562 * 9 7 2 11 11 O 1.21566 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.47189 * 119.99878 * 180.02562 * 10 9 7 13 13 C 1.39841 * 120.22480 * 0.02562 * 12 10 9 14 14 C 1.37698 * 119.92390 * 179.97438 * 13 12 10 15 15 C 1.38677 * 120.38216 * 359.97438 * 14 13 12 16 16 C 1.37909 * 120.45458 * 0.02562 * 15 14 13 17 17 C 1.39035 * 120.06657 * 359.69788 * 16 15 14 18 18 S 1.76205 * 120.19219 * 180.28127 * 17 16 15 19 19 C 1.81002 * 99.99915 * 353.97530 * 18 17 16 20 20 H 1.08999 * 110.01405 * 49.08017 * 19 18 17 21 21 C 1.53884 * 110.02367 * 287.64951 * 19 18 17 22 22 C 1.54172 * 108.70136 * 193.52804 * 21 19 18 23 23 S 1.82919 * 105.08546 * 27.91065 * 22 21 19 24 24 O 1.42101 * 109.35134 * 244.47887 * 23 22 21 25 25 O 1.42093 * 109.47581 * 111.31039 * 23 22 21 26 26 C 1.55051 * 110.02702 * 170.46257 * 19 18 17 27 27 H 0.96992 * 120.00164 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03808 * 359.95127 * 13 12 10 29 29 H 1.07995 * 119.80999 * 179.97438 * 14 13 12 30 30 H 1.08007 * 119.77460 * 180.02562 * 15 14 13 31 31 H 1.08002 * 119.96498 * 179.97438 * 16 15 14 32 32 H 1.08995 * 109.64533 * 313.38102 * 21 19 18 33 33 H 1.08997 * 109.64651 * 73.68054 * 21 19 18 34 34 H 1.08996 * 110.31850 * 269.00866 * 22 21 19 35 35 H 1.08993 * 110.31328 * 146.81283 * 22 21 19 36 36 H 1.08996 * 110.78379 * 279.99126 * 26 19 18 37 37 H 1.08993 * 110.79176 * 43.26167 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 1.2833 2.7465 -0.0006 5 1 3.1021 1.6965 1.2125 6 1 3.1020 1.6965 -1.2126 7 6 2.0082 -1.2019 0.0057 8 1 3.0882 -1.2019 0.0061 9 8 1.3339 -2.3698 0.0118 10 6 2.0681 -3.5003 0.0177 11 8 3.2821 -3.4367 0.0178 12 6 1.3998 -4.8118 0.0239 13 6 0.0036 -4.8904 0.0233 14 6 -0.6151 -6.1205 0.0286 15 6 0.1385 -7.2847 0.0341 16 6 1.5163 -7.2254 0.0349 17 6 2.1606 -5.9933 0.0237 18 16 3.9208 -5.9138 0.0172 19 6 4.3154 -7.6691 0.2157 20 1 3.7431 -8.2631 -0.4969 21 6 4.0006 -8.1207 1.6527 22 6 4.6524 -9.4972 1.8922 23 16 6.1020 -9.5381 0.7773 24 8 5.9184 -10.5565 -0.1966 25 8 7.2944 -9.5037 1.5492 26 6 5.8336 -7.8996 0.0008 27 1 -0.4850 -0.8400 0.0004 28 1 -0.5887 -3.9873 0.0189 29 1 -1.6935 -6.1791 0.0285 30 1 -0.3570 -8.2443 0.0379 31 1 2.0955 -8.1370 0.0396 32 1 4.4030 -7.3965 2.3608 33 1 2.9214 -8.1984 1.7843 34 1 3.9557 -10.2955 1.6366 35 1 4.9707 -9.5896 2.9305 36 1 6.0734 -7.9312 -1.0619 37 1 6.4170 -7.1292 0.5048 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007566979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = -117.062373 kcal Electronic energy + Delta-G solvation = -24681.100778 eV Core-core repulsion = 20835.631449 eV Total energy + Delta-G solvation = -3845.469330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 342.047 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -39.67525 -38.34692 -37.36413 -36.81191 -36.26441 -35.46897 -32.34321 -31.19121 -31.03429 -30.37713 -25.90809 -25.39233 -23.54273 -22.65293 -22.03636 -20.50005 -19.17673 -18.25241 -17.89335 -17.54272 -17.06334 -16.64967 -15.95025 -15.67988 -15.25300 -14.95689 -14.84586 -14.65369 -14.54121 -14.37939 -13.86059 -13.62405 -13.24228 -13.09772 -12.82010 -12.57333 -12.53065 -12.43230 -12.32165 -11.79163 -11.53531 -11.28191 -11.27187 -11.09142 -10.98535 -10.61586 -10.56367 -10.42780 -10.30006 -9.87518 -9.71698 -8.93325 -8.88931 -8.67536 -7.31062 -6.92150 -4.23435 -0.32201 0.91950 1.26715 1.53948 2.24843 2.34185 3.11558 3.22185 3.23032 3.34261 3.44271 3.63350 3.84778 3.98840 4.04571 4.14138 4.23271 4.33649 4.43968 4.49964 4.78533 4.98322 5.01453 5.06203 5.15415 5.20652 5.26619 5.41650 5.43432 5.58194 5.61560 5.78100 6.06535 6.31857 6.45480 6.61147 6.86549 7.46057 8.22732 8.31510 8.86223 9.54079 10.52165 Molecular weight = 342.05amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.003005 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.487640 B = 9316.648318 C =10629.641946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.014 3.986 3 Si 1.099 2.901 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.451 4.451 8 H 0.092 0.908 9 O -0.222 6.222 10 C 0.425 3.575 11 O -0.524 6.524 12 C -0.078 4.078 13 C -0.056 4.056 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.152 4.152 17 C -0.068 4.068 18 S 0.060 5.940 19 C -0.158 4.158 20 H 0.113 0.887 21 C -0.112 4.112 22 C -0.588 4.588 23 S 2.391 3.609 24 O -0.937 6.937 25 O -0.937 6.937 26 C -0.561 4.561 27 H 0.282 0.718 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -17.984 2.232 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.192 4.192 3 Si 0.922 3.078 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.526 4.526 8 H 0.110 0.890 9 O -0.129 6.129 10 C 0.274 3.726 11 O -0.424 6.424 12 C -0.085 4.085 13 C -0.076 4.076 14 C -0.157 4.157 15 C -0.107 4.107 16 C -0.176 4.176 17 C -0.182 4.182 18 S 0.307 5.693 19 C -0.287 4.287 20 H 0.131 0.869 21 C -0.152 4.152 22 C -0.720 4.720 23 S 2.574 3.426 24 O -0.934 6.934 25 O -0.935 6.935 26 C -0.691 4.691 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.773 -16.015 1.968 16.827 hybrid contribution -1.477 -2.231 0.176 2.681 sum 3.296 -18.246 2.144 18.665 Atomic orbital electron populations 1.70561 1.06664 1.31665 1.41429 1.26727 0.96706 1.01288 0.94509 0.83070 0.74461 0.72776 0.77485 1.19743 1.20499 1.20517 1.22250 0.94086 0.80992 1.55309 0.89034 1.83621 1.40137 1.14003 1.75171 1.20406 0.85935 0.84970 0.81299 1.90530 1.14543 1.85545 1.51752 1.19021 0.93468 0.90135 1.05916 1.21520 0.93042 0.98814 0.94215 1.21119 1.00177 0.92063 1.02364 1.21129 0.93281 0.98517 0.97792 1.21090 0.95395 0.95487 1.05652 1.22134 0.98772 0.95020 1.02247 1.87597 0.96036 0.96883 1.88774 1.24604 0.96452 1.07265 1.00401 0.86924 1.22385 1.04207 0.93382 0.95209 1.30495 1.19361 1.05707 1.16395 1.09096 0.77633 0.78214 0.77683 1.93622 1.86770 1.53826 1.59217 1.93619 1.42969 1.86701 1.70162 1.30483 1.01369 1.22581 1.14638 0.90837 0.84146 0.85391 0.85613 0.85148 0.88225 0.88243 0.84498 0.84062 0.83596 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.69 55.48 0.76 -24.09 16 2 C 0.01 0.38 5.49 -17.52 -0.10 0.29 16 3 Si 1.10 23.63 29.92 -169.99 -5.09 18.54 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.45 -12.93 9.65 30.93 0.30 -12.63 16 8 H 0.09 2.67 6.86 -52.49 -0.36 2.31 16 9 O -0.22 -6.06 8.39 -21.85 -0.18 -6.24 16 10 C 0.42 10.39 7.81 34.37 0.27 10.66 16 11 O -0.52 -13.52 13.02 -19.32 -0.25 -13.77 16 12 C -0.08 -1.50 5.89 -104.80 -0.62 -2.12 16 13 C -0.06 -0.93 9.61 -39.18 -0.38 -1.31 16 14 C -0.14 -1.73 10.02 -39.62 -0.40 -2.13 16 15 C -0.09 -0.97 10.02 -39.54 -0.40 -1.37 16 16 C -0.15 -1.86 8.02 -39.41 -0.32 -2.17 16 17 C -0.07 -1.09 6.08 -38.42 -0.23 -1.32 16 18 S 0.06 0.92 18.40 -107.50 -1.98 -1.05 16 19 C -0.16 -1.54 2.19 -25.19 -0.06 -1.60 16 20 H 0.11 0.92 6.51 -51.93 -0.34 0.59 16 21 C -0.11 -0.89 5.31 -25.66 -0.14 -1.02 16 22 C -0.59 -3.49 7.26 37.77 0.27 -3.22 16 23 S 2.39 20.00 6.10 -107.50 -0.66 19.34 16 24 O -0.94 -10.81 18.15 -57.73 -1.05 -11.86 16 25 O -0.94 -11.13 18.15 -57.73 -1.05 -12.18 16 26 C -0.56 -4.63 6.68 38.24 0.26 -4.37 16 27 H 0.28 8.04 7.97 -40.82 -0.33 7.72 16 28 H 0.14 2.42 7.61 -52.49 -0.40 2.02 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.13 1.19 4.53 -52.49 -0.24 0.95 16 32 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.10 0.76 6.15 -51.93 -0.32 0.44 16 34 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.15 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -37.32 337.53 -9.66 -46.98 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.73 Total: 1.56 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.53 Total: -22.31 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.53 Total: -44.05 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.09 Total: 18.54 kcal Atomic # 16 Polarization: 20.92 SS G_CDS: -2.63 Total: 18.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.32 -9.66 -46.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007566979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.081 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds