Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.37860 * 119.99882 * 120.21154 * 3 2 1 5 5 C 1.46381 * 120.00055 * 7.34724 * 4 3 2 6 6 C 1.40300 * 120.12315 * 213.84473 * 5 4 3 7 7 C 1.36531 * 119.87387 * 179.71451 * 6 5 4 8 8 C 1.39278 * 120.12410 * 0.56030 * 7 6 5 9 9 O 1.35507 * 119.87476 * 179.69721 * 8 7 6 10 10 C 1.34748 * 116.99619 * 187.03374 * 9 8 7 11 11 H 1.07999 * 120.00329 * 354.86294 * 10 9 8 12 12 C 1.38772 * 119.99984 * 174.87160 * 10 9 8 13 13 N 1.31470 * 119.99969 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99932 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47133 * 90.00029 * 14 12 10 16 16 H 1.48495 * 109.47075 * 210.00325 * 14 12 10 17 17 H 1.48507 * 109.47096 * 330.00333 * 14 12 10 18 18 C 1.39273 * 120.24425 * 359.71345 * 8 7 6 19 19 C 1.36525 * 120.12756 * 0.02562 * 18 8 7 20 20 C 1.47116 * 120.00503 * 300.20948 * 3 2 1 21 21 O 1.21648 * 120.00427 * 180.02562 * 20 3 2 22 22 N 1.34786 * 119.99577 * 0.02562 * 20 3 2 23 23 C 1.46494 * 119.99745 * 179.97438 * 22 20 3 24 24 C 1.53006 * 109.46929 * 179.97438 * 23 22 20 25 25 H 1.08992 * 110.55317 * 307.88462 * 24 23 22 26 26 C 1.54991 * 110.61786 * 185.00265 * 24 23 22 27 27 C 1.54813 * 102.09365 * 204.48246 * 26 24 23 28 28 C 1.54098 * 104.18684 * 20.87884 * 27 26 24 29 29 O 1.43744 * 107.42208 * 1.96025 * 28 27 26 30 30 H 1.07996 * 119.99694 * 187.34568 * 4 3 2 31 31 H 1.08001 * 120.06181 * 359.97132 * 6 5 4 32 32 H 1.07996 * 119.93955 * 180.27440 * 7 6 5 33 33 H 0.97001 * 119.99666 * 180.02562 * 13 12 10 34 34 H 1.08002 * 119.93319 * 180.02562 * 18 8 7 35 35 H 1.07999 * 120.06513 * 179.97438 * 19 18 8 36 36 H 0.97000 * 119.99615 * 0.02562 * 22 20 3 37 37 H 1.09006 * 109.47087 * 60.00813 * 23 22 20 38 38 H 1.08998 * 109.47706 * 300.00423 * 23 22 20 39 39 H 1.09001 * 110.91127 * 86.28063 * 26 24 23 40 40 H 1.09004 * 110.94162 * 322.68674 * 26 24 23 41 41 H 1.08997 * 110.48399 * 262.20613 * 27 26 24 42 42 H 1.09002 * 110.60765 * 139.61586 * 27 26 24 43 43 H 1.09000 * 109.87916 * 121.45651 * 28 27 26 44 44 H 1.08999 * 109.87918 * 242.46107 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2570 0.6017 -1.0318 5 6 2.5337 1.3768 -2.0412 6 6 2.9804 1.3913 -3.3711 7 6 2.2986 2.1113 -4.3096 8 6 1.1683 2.8397 -3.9466 9 8 0.4990 3.5574 -4.8810 10 6 -0.4956 4.3543 -4.4435 11 1 -0.7827 4.3377 -3.4025 12 6 -1.1513 5.1962 -5.3307 13 7 -2.1221 5.9733 -4.9039 14 14 -0.6546 5.2253 -7.1312 15 1 -1.4522 4.2220 -7.8810 16 1 -0.9059 6.5771 -7.6922 17 1 0.7894 4.9000 -7.2516 18 6 0.7238 2.8334 -2.6268 19 6 1.3948 2.1128 -1.6811 20 6 3.3039 -0.6401 1.1010 21 8 4.5204 -0.6391 1.1012 22 7 2.6303 -1.2281 2.1095 23 6 3.3631 -1.8666 3.2055 24 6 2.3691 -2.4522 4.2106 25 1 1.6441 -1.6977 4.5157 26 6 3.1132 -3.0243 5.4440 27 6 2.1054 -4.0738 5.9728 28 6 1.2047 -4.3770 4.7598 29 8 1.7000 -3.6059 3.6524 30 1 4.3303 0.5008 -1.0952 31 1 3.8595 0.8308 -3.6527 32 1 2.6389 2.1197 -5.3345 33 1 -2.5806 6.5615 -5.5241 34 1 -0.1535 3.3998 -2.3509 35 1 1.0494 2.1090 -0.6578 36 1 1.6603 -1.2292 2.1091 37 1 3.9894 -1.1264 3.7037 38 1 3.9902 -2.6643 2.8073 39 1 3.2904 -2.2464 6.1868 40 1 4.0494 -3.4983 5.1490 41 1 1.5167 -3.6590 6.7909 42 1 2.6252 -4.9754 6.2969 43 1 1.2498 -5.4396 4.5210 44 1 0.1766 -4.0903 4.9807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008237192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -37.303833 kcal Electronic energy + Delta-G solvation = -27544.125725 eV Core-core repulsion = 23427.877103 eV Total energy + Delta-G solvation = -4116.248622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.22927 -39.66257 -39.28882 -37.48874 -36.21109 -34.99283 -33.30619 -32.62677 -32.57415 -30.77545 -30.66398 -28.92186 -26.28790 -25.46703 -23.73440 -22.43281 -21.99667 -21.79357 -21.10203 -20.75768 -18.61214 -18.16907 -17.47594 -17.24627 -16.46459 -16.02640 -15.68810 -15.49487 -15.10070 -14.99797 -14.59994 -14.37906 -14.12612 -14.09561 -13.92977 -13.76442 -13.46611 -13.02995 -12.82097 -12.78881 -12.72099 -12.55910 -12.42620 -12.24466 -12.10971 -11.79248 -11.77057 -11.69204 -11.31141 -11.18472 -11.07442 -10.88561 -10.35833 -10.12832 -10.04965 -9.72797 -9.49993 -9.25538 -9.00031 -8.62307 -7.40489 -6.70842 -4.32524 0.51379 2.00230 2.14752 2.75684 2.83733 3.03724 3.07509 3.10343 3.22884 3.38799 3.75299 4.00796 4.03686 4.14423 4.25333 4.28132 4.41841 4.51447 4.62296 4.68137 4.74193 4.85476 4.93539 5.09794 5.19490 5.22278 5.30458 5.31243 5.34741 5.42282 5.43848 5.55837 5.62395 5.76748 5.84206 5.94927 6.17717 6.22236 6.28110 6.44163 6.54836 6.80638 6.92435 7.03195 7.30708 7.33828 7.53426 7.70824 7.73073 8.12456 8.60872 9.19961 10.34503 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.001847 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.729338 B =15159.714437 C =15903.849847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.257 3.743 3 C -0.193 4.193 4 C 0.119 3.881 5 C -0.223 4.223 6 C -0.027 4.027 7 C -0.199 4.199 8 C 0.180 3.820 9 O -0.192 6.192 10 C -0.390 4.390 11 H 0.113 0.887 12 C 0.067 3.933 13 N -0.858 5.858 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.256 1.256 18 C -0.229 4.229 19 C -0.026 4.026 20 C 0.584 3.416 21 O -0.544 6.544 22 N -0.728 5.728 23 C 0.130 3.870 24 C 0.060 3.940 25 H 0.078 0.922 26 C -0.146 4.146 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.370 6.370 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.286 0.714 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.403 0.597 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.010 -15.753 17.277 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.056 4.056 3 C -0.201 4.201 4 C 0.095 3.905 5 C -0.224 4.224 6 C -0.046 4.046 7 C -0.219 4.219 8 C 0.124 3.876 9 O -0.093 6.093 10 C -0.464 4.464 11 H 0.130 0.870 12 C -0.140 4.140 13 N -0.492 5.492 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.180 1.180 18 C -0.248 4.248 19 C -0.045 4.045 20 C 0.373 3.627 21 O -0.423 6.423 22 N -0.380 5.380 23 C 0.006 3.994 24 C 0.003 3.997 25 H 0.096 0.904 26 C -0.184 4.184 27 C -0.194 4.194 28 C -0.032 4.032 29 O -0.289 6.289 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.238 0.762 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.901 -15.594 16.774 24.952 hybrid contribution -0.272 0.193 -0.306 0.453 sum 9.630 -15.401 16.469 24.518 Atomic orbital electron populations 1.81298 1.11785 1.09828 1.07512 1.25467 0.92582 0.93393 0.94168 1.17855 0.84790 1.15222 1.02203 1.23066 0.99532 0.81768 0.86105 1.18504 1.01306 1.08542 0.94034 1.20615 0.97476 0.95193 0.91298 1.19933 0.97104 1.04285 1.00533 1.19469 0.89941 0.90198 0.88030 1.83462 1.42838 1.49306 1.33735 1.20962 1.09642 1.17442 0.98392 0.87006 1.24597 0.94744 0.94005 1.00619 1.69599 1.20394 1.22139 1.37078 0.86130 0.80618 0.77926 0.82054 1.19499 1.20349 1.18017 1.20938 1.04218 1.06675 0.92950 1.20913 0.91685 0.93300 0.98603 1.17557 0.86754 0.77344 0.81069 1.90798 1.12767 1.60522 1.78231 1.45780 1.10560 1.58049 1.23565 1.21376 0.93652 0.97353 0.87031 1.23478 0.93989 0.89423 0.92845 0.90398 1.23081 0.99381 0.98877 0.97042 1.22933 0.97852 0.99962 0.98607 1.23157 0.97182 0.96789 0.86069 1.89008 1.74552 1.35886 1.29443 0.83090 0.85676 0.85743 0.90397 0.84518 0.86896 0.76249 0.89702 0.90249 0.89660 0.89812 0.90532 0.90237 0.89747 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.38 18.21 41.84 0.76 -6.61 16 2 C 0.26 3.92 10.59 -22.48 -0.24 3.68 16 3 C -0.19 -2.60 5.82 -104.51 -0.61 -3.21 16 4 C 0.12 1.54 9.43 -36.45 -0.34 1.20 16 5 C -0.22 -3.47 5.51 -105.07 -0.58 -4.05 16 6 C -0.03 -0.41 9.75 -39.42 -0.38 -0.79 16 7 C -0.20 -3.55 9.93 -39.81 -0.40 -3.94 16 8 C 0.18 3.87 6.66 -38.81 -0.26 3.61 16 9 O -0.19 -4.72 8.57 1.02 0.01 -4.71 16 10 C -0.39 -10.35 9.94 30.93 0.31 -10.04 16 11 H 0.11 3.06 5.42 -52.49 -0.28 2.77 16 12 C 0.07 1.77 5.50 -17.51 -0.10 1.67 16 13 N -0.86 -23.40 13.96 55.49 0.77 -22.62 16 14 Si 0.91 20.24 28.62 -169.99 -4.86 15.37 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 18 C -0.23 -4.76 9.10 -39.81 -0.36 -5.12 16 19 C -0.03 -0.47 8.24 -39.42 -0.32 -0.80 16 20 C 0.58 7.65 7.75 -12.65 -0.10 7.55 16 21 O -0.54 -8.17 16.31 5.23 0.09 -8.09 16 22 N -0.73 -8.05 5.51 -61.48 -0.34 -8.39 16 23 C 0.13 1.15 5.42 -4.04 -0.02 1.13 16 24 C 0.06 0.45 3.37 -25.68 -0.09 0.37 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 C -0.15 -0.76 6.59 -24.72 -0.16 -0.92 16 27 C -0.16 -0.74 7.01 -25.20 -0.18 -0.92 16 28 C 0.04 0.30 7.69 37.73 0.29 0.59 16 29 O -0.37 -3.56 11.24 -35.23 -0.40 -3.95 16 30 H 0.15 1.63 7.61 -52.49 -0.40 1.23 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.29 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.14 3.03 5.63 -52.49 -0.30 2.73 16 35 H 0.11 1.95 5.96 -52.49 -0.31 1.64 16 36 H 0.40 4.38 7.35 -40.82 -0.30 4.08 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -30.27 381.62 -7.13 -37.40 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.37 Total: 5.85 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.54 Total: -10.00 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.20 Total: -37.62 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.30 Total: -16.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.86 Total: 15.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.27 -7.13 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008237192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.094 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds