Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37851 * 119.99667 * 148.98991 * 3 2 1 5 5 C 1.46382 * 120.00202 * 7.34470 * 4 3 2 6 6 C 1.40298 * 120.12324 * 213.92292 * 5 4 3 7 7 C 1.36540 * 119.87666 * 179.76707 * 6 5 4 8 8 C 1.39278 * 120.11970 * 0.48869 * 7 6 5 9 9 O 1.35498 * 119.87551 * 179.76820 * 8 7 6 10 10 C 1.34754 * 117.00135 * 187.02281 * 9 8 7 11 11 H 1.08000 * 119.99389 * 354.86106 * 10 9 8 12 12 C 1.38768 * 120.00254 * 174.86841 * 10 9 8 13 13 N 1.31472 * 120.00077 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00127 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47159 * 90.00034 * 14 12 10 16 16 H 1.48494 * 109.47138 * 210.00431 * 14 12 10 17 17 H 1.48497 * 109.47053 * 330.00432 * 14 12 10 18 18 C 1.39276 * 120.24786 * 359.78430 * 8 7 6 19 19 C 1.36536 * 120.12269 * 359.95781 * 18 8 7 20 20 C 1.47121 * 120.00263 * 328.98500 * 3 2 1 21 21 O 1.21648 * 119.99788 * 180.02562 * 20 3 2 22 22 N 1.34780 * 119.99901 * 0.02562 * 20 3 2 23 23 C 1.46497 * 119.99676 * 180.02562 * 22 20 3 24 24 C 1.52999 * 109.46964 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.82261 * 59.43119 * 24 23 22 26 26 C 1.54380 * 109.90724 * 180.36672 * 24 23 22 27 27 C 1.55567 * 102.27304 * 140.91654 * 26 24 23 28 28 C 1.54941 * 100.82648 * 325.87822 * 27 26 24 29 29 O 1.43240 * 109.83112 * 298.54787 * 24 23 22 30 30 H 1.08004 * 119.99923 * 187.34721 * 4 3 2 31 31 H 1.07996 * 120.06580 * 0.02562 * 6 5 4 32 32 H 1.07995 * 119.94156 * 180.23496 * 7 6 5 33 33 H 0.97003 * 120.00187 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.93758 * 179.97438 * 18 8 7 35 35 H 1.08003 * 120.05869 * 180.02562 * 19 18 8 36 36 H 0.96997 * 120.00113 * 359.97438 * 22 20 3 37 37 H 1.09000 * 109.47020 * 60.00241 * 23 22 20 38 38 H 1.09001 * 109.47351 * 299.99800 * 23 22 20 39 39 H 1.08996 * 110.84712 * 259.10587 * 26 24 23 40 40 H 1.08995 * 110.84724 * 22.51782 * 26 24 23 41 41 H 1.09001 * 111.22029 * 207.98400 * 27 26 24 42 42 H 1.08995 * 111.13613 * 83.74804 * 27 26 24 43 43 H 1.08992 * 110.31549 * 277.48159 * 28 27 26 44 44 H 1.09004 * 110.30935 * 155.40417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2568 1.0242 -0.6151 5 6 2.5333 2.1894 -1.1266 6 6 2.9788 2.8414 -2.2862 7 6 2.2974 3.9250 -2.7616 8 6 1.1680 4.3893 -2.0918 9 8 0.4983 5.4678 -2.5653 10 6 -0.4957 5.9563 -1.7976 11 1 -0.7818 5.4411 -0.8926 12 6 -1.1516 7.1211 -2.1700 13 7 -2.1216 7.5974 -1.4212 14 14 -0.6563 8.0124 -3.7352 15 1 -1.4551 7.4933 -4.8744 16 1 -0.9074 9.4674 -3.5768 17 1 0.7873 7.7850 -3.9986 18 6 0.7246 3.7494 -0.9370 19 6 1.3953 2.6618 -0.4557 20 6 3.3042 -1.0910 0.6565 21 8 4.5207 -1.0901 0.6568 22 7 2.6308 -2.0919 1.2575 23 6 3.3639 -3.1785 1.9116 24 6 2.3702 -4.1757 2.5108 25 1 1.7341 -4.5817 1.7241 26 6 3.1324 -5.3211 3.2111 27 6 2.2644 -5.5700 4.4779 28 6 1.7768 -4.1314 4.7838 29 8 1.5642 -3.5241 3.4995 30 1 4.3302 0.9664 -0.7196 31 1 3.8566 2.4845 -2.8043 32 1 2.6372 4.4253 -3.6563 33 1 -2.5799 8.4118 -1.6813 34 1 -0.1515 4.1139 -0.4214 35 1 1.0503 2.1661 0.4397 36 1 1.6608 -2.0924 1.2575 37 1 3.9896 -2.7689 2.7045 38 1 3.9914 -3.6861 1.1791 39 1 3.1620 -6.2097 2.5807 40 1 4.1400 -5.0069 3.4832 41 1 2.8659 -5.9634 5.2973 42 1 1.4260 -6.2302 4.2563 43 1 2.5380 -3.5841 5.3397 44 1 0.8445 -4.1599 5.3478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008237196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -37.461334 kcal Electronic energy + Delta-G solvation = -27633.433826 eV Core-core repulsion = 23517.178374 eV Total energy + Delta-G solvation = -4116.255452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.27969 -39.66407 -39.26887 -37.47208 -36.19169 -34.91302 -33.29177 -32.63965 -32.58000 -30.74611 -30.65013 -28.91631 -26.29384 -25.46290 -23.72117 -22.46488 -22.12123 -21.57608 -21.07893 -20.73149 -18.58166 -18.15775 -17.49936 -17.41619 -16.43487 -16.30741 -15.46571 -15.31618 -15.17887 -14.71550 -14.59885 -14.30669 -14.10972 -14.08842 -13.97088 -13.75446 -13.39061 -13.23422 -12.93462 -12.74154 -12.58576 -12.53231 -12.41787 -12.23532 -12.09331 -11.85148 -11.73477 -11.65990 -11.34356 -11.29325 -11.06730 -10.87702 -10.35105 -10.05403 -9.94967 -9.71666 -9.48676 -9.22350 -8.98807 -8.61248 -7.39470 -6.69800 -4.31590 0.52845 2.01134 2.15725 2.77509 2.85564 3.03163 3.08079 3.10832 3.23452 3.47359 3.77253 3.97026 4.01529 4.15183 4.22925 4.28631 4.38785 4.52366 4.65522 4.72843 4.77510 4.86376 4.91601 5.18274 5.19376 5.22504 5.25216 5.30936 5.32199 5.40404 5.45892 5.54793 5.70301 5.77965 5.85406 5.96287 6.18854 6.23775 6.29161 6.55921 6.59576 6.81506 6.93521 7.04508 7.31730 7.38298 7.54576 7.72936 7.74102 8.15253 8.61885 9.20958 10.35562 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.001901 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.454199 B =14728.311920 C =15666.521501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.257 3.743 3 C -0.192 4.192 4 C 0.118 3.882 5 C -0.222 4.222 6 C -0.028 4.028 7 C -0.199 4.199 8 C 0.180 3.820 9 O -0.192 6.192 10 C -0.390 4.390 11 H 0.113 0.887 12 C 0.067 3.933 13 N -0.858 5.858 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.256 1.256 18 C -0.229 4.229 19 C -0.026 4.026 20 C 0.583 3.417 21 O -0.546 6.546 22 N -0.725 5.725 23 C 0.113 3.887 24 C 0.065 3.935 25 H 0.088 0.912 26 C -0.147 4.147 27 C -0.156 4.156 28 C 0.049 3.951 29 O -0.374 6.374 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.286 0.714 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 -22.452 7.427 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.057 4.057 3 C -0.200 4.200 4 C 0.094 3.906 5 C -0.223 4.223 6 C -0.046 4.046 7 C -0.219 4.219 8 C 0.124 3.876 9 O -0.094 6.094 10 C -0.464 4.464 11 H 0.130 0.870 12 C -0.140 4.140 13 N -0.492 5.492 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.180 1.180 18 C -0.248 4.248 19 C -0.045 4.045 20 C 0.372 3.628 21 O -0.425 6.425 22 N -0.376 5.376 23 C -0.011 4.011 24 C 0.007 3.993 25 H 0.106 0.894 26 C -0.185 4.185 27 C -0.194 4.194 28 C -0.028 4.028 29 O -0.293 6.293 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.491 -21.960 7.244 25.392 hybrid contribution -0.043 0.294 -0.324 0.439 sum 10.448 -21.666 6.920 25.029 Atomic orbital electron populations 1.81300 1.11778 1.08173 1.09081 1.25469 0.92581 0.93650 0.93960 1.17868 0.84803 1.01265 1.16020 1.23059 0.99505 0.86932 0.81100 1.18501 1.01314 1.00804 1.01725 1.20611 0.97469 0.92648 0.93891 1.19932 0.97136 1.01010 1.03791 1.19467 0.89938 0.86975 0.91261 1.83459 1.42874 1.38343 1.44696 1.20963 1.09682 1.08943 1.06844 0.87003 1.24595 0.94748 0.95548 0.99078 1.69600 1.20441 1.21769 1.37419 0.86130 0.80604 0.78395 0.81596 1.19508 1.20356 1.18028 1.20943 1.04243 0.99748 0.99832 1.20924 0.91678 0.94274 0.97625 1.17573 0.86751 0.80831 0.77686 1.90792 1.12805 1.77754 1.61186 1.45723 1.10644 1.24146 1.57065 1.21757 0.94214 0.87917 0.97198 1.23046 0.92340 0.91881 0.91998 0.89428 1.23144 0.99948 0.98427 0.97015 1.23314 1.00174 0.97791 0.98071 1.23409 1.01343 0.91885 0.86130 1.88498 1.65049 1.58643 1.17138 0.83121 0.85698 0.85754 0.90403 0.84511 0.86875 0.76113 0.90893 0.90217 0.89527 0.89810 0.89658 0.90215 0.92014 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.47 18.21 41.84 0.76 -6.70 16 2 C 0.26 3.98 10.59 -22.47 -0.24 3.74 16 3 C -0.19 -2.63 5.82 -104.51 -0.61 -3.24 16 4 C 0.12 1.55 9.43 -36.45 -0.34 1.20 16 5 C -0.22 -3.50 5.51 -105.07 -0.58 -4.08 16 6 C -0.03 -0.42 9.75 -39.42 -0.38 -0.80 16 7 C -0.20 -3.57 9.93 -39.81 -0.40 -3.96 16 8 C 0.18 3.89 6.66 -38.81 -0.26 3.63 16 9 O -0.19 -4.75 8.57 1.04 0.01 -4.74 16 10 C -0.39 -10.40 9.94 30.93 0.31 -10.09 16 11 H 0.11 3.08 5.42 -52.49 -0.28 2.79 16 12 C 0.07 1.78 5.50 -17.51 -0.10 1.68 16 13 N -0.86 -23.51 13.96 55.49 0.77 -22.73 16 14 Si 0.91 20.31 28.62 -169.99 -4.86 15.44 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 18 C -0.23 -4.80 9.10 -39.81 -0.36 -5.16 16 19 C -0.03 -0.48 8.24 -39.42 -0.32 -0.80 16 20 C 0.58 7.77 7.75 -12.65 -0.10 7.67 16 21 O -0.55 -8.32 16.31 5.23 0.09 -8.23 16 22 N -0.72 -8.21 5.42 -61.48 -0.33 -8.54 16 23 C 0.11 1.02 5.24 -4.04 -0.02 1.00 16 24 C 0.07 0.49 3.60 -26.01 -0.09 0.39 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.15 -0.72 6.55 -24.64 -0.16 -0.88 16 27 C -0.16 -0.72 7.18 -24.34 -0.17 -0.90 16 28 C 0.05 0.33 7.77 38.18 0.30 0.62 16 29 O -0.37 -3.61 10.84 -35.23 -0.38 -3.99 16 30 H 0.15 1.65 7.61 -52.48 -0.40 1.25 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.29 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.14 3.06 5.63 -52.49 -0.30 2.77 16 35 H 0.11 2.00 5.97 -52.48 -0.31 1.69 16 36 H 0.40 4.58 7.28 -40.82 -0.30 4.28 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -30.49 381.10 -7.10 -37.60 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.36 Total: 6.13 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.53 Total: -9.98 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 1.20 Total: -37.98 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.29 Total: -16.96 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.86 Total: 15.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.49 -7.10 -37.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008237196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.134 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds