Wall clock time and date at job start Tue Mar 31 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99745 * 2 1 4 4 C 1.50706 * 109.46808 * 269.99712 * 3 2 1 5 5 H 1.07998 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99741 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99884 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00025 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46974 * 60.00055 * 8 6 4 10 10 H 1.48498 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47259 * 300.00313 * 8 6 4 12 12 C 1.34774 * 120.00419 * 180.02562 * 2 1 3 13 13 S 1.71194 * 120.00233 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99491 * 359.97438 * 12 2 1 15 15 C 1.40086 * 119.99760 * 184.09372 * 14 12 2 16 16 C 1.38861 * 120.01280 * 315.82714 * 15 14 12 17 17 C 1.38083 * 119.98496 * 179.72784 * 16 15 14 18 18 C 1.38739 * 120.01180 * 0.25207 * 17 16 15 19 19 O 1.35962 * 119.98389 * 180.02562 * 18 17 16 20 20 C 1.35882 * 117.99647 * 254.14288 * 19 18 17 21 21 C 1.38760 * 120.06070 * 358.30658 * 20 19 18 22 22 C 1.38135 * 119.94315 * 179.74214 * 21 20 19 23 23 C 1.38270 * 120.05671 * 0.53496 * 22 21 20 24 24 C 1.38271 * 120.11839 * 359.72317 * 23 22 21 25 25 C 1.38137 * 120.05784 * 0.02562 * 24 23 22 26 26 C 1.38750 * 120.03060 * 0.02562 * 18 17 16 27 27 C 1.38079 * 120.01166 * 359.95469 * 26 18 17 28 28 H 1.08997 * 109.47392 * 269.99975 * 1 2 3 29 29 H 1.09001 * 109.47417 * 30.00350 * 1 2 3 30 30 H 1.09003 * 109.47063 * 149.99970 * 1 2 3 31 31 H 1.08997 * 109.47102 * 29.99646 * 3 2 1 32 32 H 1.08998 * 109.47171 * 150.00172 * 3 2 1 33 33 H 0.97006 * 120.00156 * 180.02562 * 7 6 4 34 34 H 0.96993 * 119.99980 * 4.09631 * 14 12 2 35 35 H 1.08000 * 120.00860 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.98893 * 180.27254 * 17 16 15 37 37 H 1.08004 * 120.02890 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.97090 * 180.25695 * 22 21 20 39 39 H 1.08001 * 119.94192 * 179.69918 * 23 22 21 40 40 H 1.08003 * 119.97139 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.02837 * 179.97438 * 25 24 23 42 42 H 1.07993 * 119.99260 * 179.97438 * 26 18 17 43 43 H 1.08001 * 120.00663 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2418 6 6 3.1259 2.8780 -1.6729 7 7 3.5531 3.6181 -0.6733 8 14 3.4367 3.4176 -3.4340 9 1 2.1389 3.5947 -4.1337 10 1 4.1781 4.7042 -3.4340 11 1 4.2394 2.3830 -4.1343 12 6 2.1390 -1.1671 -0.0005 13 16 3.8509 -1.1671 0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1628 -3.5460 0.0855 16 6 3.3062 -3.7447 -0.6770 17 6 3.9968 -4.9371 -0.5875 18 6 3.5455 -5.9385 0.2601 19 8 4.2262 -7.1121 0.3482 20 6 3.6873 -8.2083 -0.2472 21 6 2.4606 -8.1180 -0.8894 22 6 1.9175 -9.2325 -1.4984 23 6 2.5899 -10.4401 -1.4589 24 6 3.8099 -10.5341 -0.8151 25 6 4.3599 -9.4213 -0.2089 26 6 2.3998 -5.7427 1.0180 27 6 1.7087 -4.5507 0.9297 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0293 4.4445 -0.8505 34 1 0.4969 -2.3354 -0.0602 35 1 3.6576 -2.9653 -1.3369 36 1 4.8885 -5.0900 -1.1772 37 1 1.9330 -7.1760 -0.9170 38 1 0.9647 -9.1618 -2.0019 39 1 2.1613 -11.3115 -1.9315 40 1 4.3333 -11.4784 -0.7860 41 1 5.3127 -9.4954 0.2943 42 1 2.0489 -6.5228 1.6772 43 1 0.8171 -4.3982 1.5199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008773145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:49 Heat of formation + Delta-G solvation = 62.806651 kcal Electronic energy + Delta-G solvation = -25799.522201 eV Core-core repulsion = 22130.367566 eV Total energy + Delta-G solvation = -3669.154635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03717 -39.73975 -38.42123 -37.36500 -34.87873 -32.66603 -31.27744 -31.11839 -30.37652 -28.92512 -28.35828 -26.79400 -24.03829 -23.37681 -22.89375 -22.70436 -21.44314 -20.99670 -18.78965 -18.25679 -17.66235 -16.97878 -16.67385 -16.11214 -16.01938 -15.52922 -14.82983 -14.65833 -14.53605 -14.39359 -14.02411 -13.80737 -13.74022 -13.62799 -13.47657 -12.95015 -12.65250 -12.38833 -12.31283 -12.14778 -11.85644 -11.75460 -11.44424 -11.14796 -11.05982 -10.90458 -10.74275 -10.43719 -10.21950 -9.95999 -9.25937 -9.07627 -9.02551 -8.51486 -8.48410 -8.01791 -7.03406 -6.30670 -6.12375 -4.17234 0.91933 1.09190 1.19935 1.39558 2.00843 2.50333 3.06575 3.13402 3.28195 3.34033 3.37791 3.53918 3.66065 3.79565 4.38891 4.60747 4.68297 4.80875 4.89729 4.91864 4.99767 5.11645 5.15256 5.23412 5.27448 5.34543 5.38138 5.45678 5.59988 5.70403 5.74381 5.89556 6.02758 6.08506 6.16833 6.20870 6.27648 6.33007 6.49611 6.58445 6.61780 6.90648 7.03714 7.34438 7.39499 7.52477 7.79137 7.81559 8.04299 8.80622 9.46072 10.96054 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.002265 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.341257 B =12361.232519 C =12712.317780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.535 5.535 3 C 0.235 3.765 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.548 3.452 13 S -0.624 6.624 14 N -0.654 5.654 15 C 0.146 3.854 16 C -0.053 4.053 17 C -0.114 4.114 18 C 0.076 3.924 19 O -0.256 6.256 20 C 0.127 3.873 21 C -0.195 4.195 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.085 4.085 25 C -0.150 4.150 26 C -0.135 4.135 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 -24.002 1.161 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.238 5.238 3 C 0.117 3.883 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.191 3.809 13 S -0.488 6.488 14 N -0.285 5.285 15 C 0.051 3.949 16 C -0.077 4.077 17 C -0.135 4.135 18 C 0.033 3.967 19 O -0.168 6.168 20 C 0.084 3.916 21 C -0.214 4.214 22 C -0.101 4.101 23 C -0.178 4.178 24 C -0.103 4.103 25 C -0.169 4.169 26 C -0.155 4.155 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.180 0.820 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.150 -23.516 1.344 24.615 hybrid contribution -1.385 0.557 -0.908 1.748 sum -8.535 -22.958 0.436 24.497 Atomic orbital electron populations 1.22023 0.80822 1.03762 1.02015 1.47832 1.06247 1.06647 1.63033 1.20064 0.93979 0.74890 0.99390 1.21048 1.37783 1.06448 0.90955 0.92574 1.24833 0.94918 0.96195 0.97535 1.69904 1.37681 1.14256 1.30835 0.86514 0.78313 0.77962 0.84395 1.20439 1.21100 1.19927 1.22318 0.95709 0.81156 0.81743 1.93159 0.89460 1.92412 1.73774 1.42315 1.09241 1.02835 1.74079 1.17464 0.95558 0.84506 0.97342 1.21697 0.92794 0.95444 0.97804 1.21051 1.01319 0.92858 0.98290 1.18635 0.93931 0.85275 0.98842 1.84419 1.47283 1.14647 1.70439 1.19259 0.92410 0.86763 0.93148 1.21417 0.96448 1.00570 1.02964 1.20975 0.99436 0.92234 0.97459 1.21081 0.96272 0.97959 1.02454 1.20953 0.95403 0.97685 0.96245 1.20456 1.01569 0.90323 1.04522 1.20986 0.95325 0.98290 1.00874 1.20694 1.01599 0.93495 0.98108 0.91807 0.88644 0.92266 0.94175 0.90218 0.92463 0.75998 0.82009 0.84819 0.85031 0.85829 0.86006 0.85390 0.85092 0.85307 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.24 59.85 0.61 1.40 16 2 N -0.53 -10.17 2.86 -184.99 -0.53 -10.70 16 3 C 0.23 5.68 4.92 -5.19 -0.03 5.65 16 4 C -0.52 -13.93 9.39 -34.44 -0.32 -14.26 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 7 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.55 10.48 7.56 -86.92 -0.66 9.82 16 13 S -0.62 -14.71 24.14 -107.50 -2.59 -17.31 16 14 N -0.65 -9.36 5.20 -11.36 -0.06 -9.42 16 15 C 0.15 2.06 5.97 -83.62 -0.50 1.57 16 16 C -0.05 -0.83 7.86 -39.41 -0.31 -1.14 16 17 C -0.11 -1.61 9.98 -39.45 -0.39 -2.00 16 18 C 0.08 0.99 4.63 -39.21 -0.18 0.81 16 19 O -0.26 -3.37 9.99 -3.76 -0.04 -3.41 16 20 C 0.13 1.47 6.61 -39.19 -0.26 1.21 16 21 C -0.20 -2.05 8.91 -39.43 -0.35 -2.40 16 22 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 23 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 24 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 25 C -0.15 -1.48 9.99 -39.42 -0.39 -1.87 16 26 C -0.13 -1.56 8.50 -39.45 -0.34 -1.90 16 27 C -0.12 -1.36 9.96 -39.41 -0.39 -1.75 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.06 0.59 6.31 -51.93 -0.33 0.26 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.40 4.29 6.52 -40.82 -0.27 4.03 16 35 H 0.16 2.93 5.97 -41.26 -0.25 2.68 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.13 1.37 6.09 -52.48 -0.32 1.05 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -32.94 374.71 -11.92 -44.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.27 Total: 5.69 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.80 Total: -6.95 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.15 Total: -44.89 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.04 Total: -3.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -14.71 SS G_CDS: -2.59 Total: -17.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.94 -11.92 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008773145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.669 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds