Wall clock time and date at job start Tue Mar 31 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86795 * 120.00208 * 2 1 4 4 H 1.48503 * 109.46991 * 270.00052 * 3 2 1 5 5 H 1.48498 * 109.47196 * 29.99497 * 3 2 1 6 6 H 1.48499 * 109.47467 * 150.00031 * 3 2 1 7 7 C 1.38754 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99933 * 0.02562 * 7 2 1 9 9 O 1.34776 * 119.99795 * 180.27708 * 7 2 1 10 10 C 1.35584 * 116.99673 * 176.36086 * 9 7 2 11 11 C 1.39380 * 119.71951 * 173.70155 * 10 9 7 12 12 C 1.36561 * 120.12950 * 179.97438 * 11 10 9 13 13 C 1.39594 * 119.91217 * 0.02562 * 12 11 10 14 14 C 1.40439 * 120.49888 * 359.97438 * 13 12 11 15 15 C 1.38695 * 119.72440 * 353.42527 * 10 9 7 16 16 O 1.35093 * 109.71731 * 180.02562 * 14 13 12 17 17 C 1.35364 * 111.83071 * 0.02562 * 16 14 13 18 18 C 1.35677 * 126.22327 * 180.02562 * 17 16 14 19 19 C 1.46919 * 119.99377 * 1.74332 * 18 17 16 20 20 C 1.39986 * 120.19505 * 12.45862 * 19 18 17 21 21 C 1.37808 * 119.82937 * 180.02562 * 20 19 18 22 22 C 1.38482 * 120.21936 * 0.02562 * 21 20 19 23 23 C 1.38347 * 120.38690 * 0.02562 * 22 21 20 24 24 C 1.38051 * 120.16470 * 359.66843 * 23 22 21 25 25 Cl 1.73602 * 120.10825 * 180.30254 * 24 23 22 26 26 C 1.47131 * 107.56328 * 359.97438 * 17 16 14 27 27 O 1.21874 * 127.74306 * 180.02562 * 26 17 16 28 28 H 0.96994 * 119.99860 * 359.97438 * 1 2 3 29 29 H 1.07991 * 119.93385 * 359.97438 * 11 10 9 30 30 H 1.08005 * 120.04235 * 180.02562 * 12 11 10 31 31 H 1.08004 * 120.00578 * 0.02562 * 15 10 9 32 32 H 1.07996 * 120.00537 * 181.74639 * 18 17 16 33 33 H 1.08006 * 120.08332 * 0.02562 * 20 19 18 34 34 H 1.08004 * 119.89246 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.80820 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.91744 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4964 2.0463 -1.4001 5 1 1.4464 2.6526 0.6999 6 1 3.5465 1.4401 0.7000 7 6 2.0087 -1.2016 0.0005 8 1 1.4687 -2.1369 0.0005 9 8 3.3564 -1.2016 0.0062 10 6 3.9716 -2.4074 0.0831 11 6 5.3578 -2.4849 -0.0394 12 6 5.9861 -3.6950 0.0373 13 6 5.2380 -4.8563 0.2381 14 6 3.8407 -4.7913 0.3630 15 6 3.2168 -3.5527 0.2886 16 8 3.3416 -6.0327 0.5499 17 6 4.3174 -6.9708 0.5636 18 6 4.1437 -8.3061 0.7299 19 6 2.7902 -8.8575 0.8798 20 6 1.6717 -8.0654 0.5953 21 6 0.4056 -8.5901 0.7390 22 6 0.2369 -9.8973 1.1641 23 6 1.3360 -10.6878 1.4488 24 6 2.6117 -10.1803 1.3043 25 17 3.9899 -11.1762 1.6545 26 6 5.6008 -6.2794 0.3642 27 8 6.7141 -6.7727 0.3143 28 1 -0.4850 0.8400 0.0004 29 1 5.9361 -1.5863 -0.1952 30 1 7.0604 -3.7534 -0.0574 31 1 2.1435 -3.4818 0.3864 32 1 5.0002 -8.9635 0.7522 33 1 1.8007 -7.0455 0.2640 34 1 -0.4581 -7.9800 0.5194 35 1 -0.7583 -10.3016 1.2749 36 1 1.1957 -11.7061 1.7803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008991348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:29 Heat of formation + Delta-G solvation = -10.535292 kcal Electronic energy + Delta-G solvation = -25351.639152 eV Core-core repulsion = 21373.301525 eV Total energy + Delta-G solvation = -3978.337627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.049 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93671 -39.48395 -39.11315 -37.95810 -36.66650 -36.28042 -33.66770 -32.78797 -30.97657 -30.53470 -29.92541 -29.17640 -26.28931 -24.75830 -23.26420 -22.39651 -22.33311 -20.66413 -20.19446 -18.33056 -18.11504 -17.24586 -16.64566 -16.39245 -16.09587 -15.78085 -15.53975 -14.71071 -14.46430 -14.31480 -14.16599 -14.05915 -13.78361 -13.65218 -13.52573 -13.35357 -13.33299 -12.75587 -12.60055 -12.24668 -11.93328 -11.77152 -11.53018 -11.52193 -11.11445 -10.98714 -10.95158 -10.51520 -10.23039 -9.92971 -9.49007 -9.21576 -9.03929 -8.67933 -7.89287 -7.79694 -6.80506 -4.43759 -0.00722 1.01966 1.16997 1.78930 1.88901 2.06852 2.81482 2.99725 3.06093 3.09171 3.18320 3.55268 3.79166 3.93820 4.12331 4.39654 4.57156 4.63838 4.73939 4.75118 4.96013 5.05273 5.14626 5.19429 5.39408 5.43343 5.61188 5.66416 5.78071 5.85962 5.88826 6.01378 6.17726 6.27606 6.33445 6.52725 6.63276 6.72399 6.74392 6.94963 7.31401 7.43292 7.59266 7.63100 8.50281 9.06556 10.24223 Molecular weight = 342.05amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002850 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.220165 B = 9821.757788 C =11623.280038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.393 4.393 8 H 0.116 0.884 9 O -0.181 6.181 10 C 0.209 3.791 11 C -0.214 4.214 12 C 0.028 3.972 13 C -0.355 4.355 14 C 0.175 3.825 15 C -0.242 4.242 16 O -0.217 6.217 17 C 0.001 3.999 18 C -0.070 4.070 19 C -0.052 4.052 20 C -0.088 4.088 21 C -0.114 4.114 22 C -0.104 4.104 23 C -0.115 4.115 24 C -0.023 4.023 25 Cl -0.066 7.066 26 C 0.416 3.584 27 O -0.447 6.447 28 H 0.287 0.713 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -15.555 1.743 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.467 4.467 8 H 0.133 0.867 9 O -0.082 6.082 10 C 0.152 3.848 11 C -0.233 4.233 12 C 0.010 3.990 13 C -0.358 4.358 14 C 0.131 3.869 15 C -0.261 4.261 16 O -0.126 6.126 17 C -0.045 4.045 18 C -0.089 4.089 19 C -0.053 4.053 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.050 4.050 25 Cl -0.037 7.037 26 C 0.299 3.701 27 O -0.327 6.327 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.449 -15.511 1.762 15.801 hybrid contribution 0.076 0.535 0.081 0.546 sum 2.524 -14.976 1.843 15.299 Atomic orbital electron populations 1.69597 1.05841 1.29530 1.43640 1.24600 0.95134 0.99372 0.94688 0.86138 0.80484 0.80710 0.79507 1.19306 1.20264 1.17900 1.21003 0.76385 0.97274 1.52027 0.86723 1.83561 1.23337 1.25340 1.75930 1.18808 0.91211 0.84365 0.90419 1.19926 0.91643 0.98238 1.13507 1.19846 0.98848 0.89236 0.91104 1.20309 0.94568 0.95289 1.25638 1.19288 0.91188 0.84142 0.92323 1.20022 1.02019 0.87400 1.16698 1.84359 1.32853 1.13919 1.81439 1.22039 0.89099 0.89913 1.03402 1.21687 0.96602 0.90228 1.00384 1.18715 0.93371 0.92006 1.01168 1.21985 0.91152 1.00658 0.96768 1.21290 0.97597 0.95523 0.98830 1.21266 0.98536 0.94010 0.98396 1.20949 0.90317 1.00768 1.01366 1.21103 0.88770 0.91517 1.03590 1.98368 1.43160 1.68882 1.93314 1.20467 0.87527 0.88265 0.73837 1.90662 1.24932 1.75730 1.41350 0.90219 0.84994 0.85409 0.83384 0.82045 0.82897 0.84855 0.84998 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.12 13.96 55.48 0.77 -21.34 16 2 C 0.07 1.75 5.50 -17.51 -0.10 1.65 16 3 Si 0.91 19.26 28.62 -169.99 -4.86 14.39 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 7 C -0.39 -9.82 9.90 30.92 0.31 -9.51 16 8 H 0.12 2.92 5.47 -52.49 -0.29 2.64 16 9 O -0.18 -4.19 8.57 0.71 0.01 -4.19 16 10 C 0.21 4.31 6.64 -38.99 -0.26 4.05 16 11 C -0.21 -3.79 9.93 -39.76 -0.39 -4.18 16 12 C 0.03 0.48 10.04 -39.68 -0.40 0.08 16 13 C -0.36 -6.43 6.34 -104.83 -0.66 -7.10 16 14 C 0.18 3.25 7.28 -38.51 -0.28 2.97 16 15 C -0.24 -4.82 9.15 -39.17 -0.36 -5.18 16 16 O -0.22 -3.68 7.18 0.47 0.00 -3.67 16 17 C 0.00 0.01 6.84 -36.89 -0.25 -0.24 16 18 C -0.07 -0.97 9.45 -36.99 -0.35 -1.31 16 19 C -0.05 -0.67 5.85 -105.04 -0.61 -1.29 16 20 C -0.09 -1.13 9.19 -39.08 -0.36 -1.48 16 21 C -0.11 -1.20 10.03 -39.65 -0.40 -1.60 16 22 C -0.10 -0.94 10.04 -39.45 -0.40 -1.33 16 23 C -0.12 -1.10 9.82 -39.61 -0.39 -1.49 16 24 C -0.02 -0.26 6.36 -38.96 -0.25 -0.51 16 25 Cl -0.07 -0.70 27.48 -51.86 -1.43 -2.13 16 26 C 0.42 7.32 7.80 -32.25 -0.25 7.07 16 27 O -0.45 -8.39 18.06 5.03 0.09 -8.30 16 28 H 0.29 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.15 3.04 5.66 -52.48 -0.30 2.74 16 32 H 0.16 2.06 7.08 -52.49 -0.37 1.69 16 33 H 0.15 2.13 5.09 -52.48 -0.27 1.87 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -26.74 337.25 -8.21 -34.95 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.47 Total: 4.64 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -5.40 Total: -19.43 kcal Atomic # 7 Polarization: -22.12 SS G_CDS: 0.77 Total: -21.34 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.10 Total: -16.17 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.86 Total: 14.39 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.43 Total: -2.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.74 -8.21 -34.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008991348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.413 kcal (2) G-P(sol) polarization free energy of solvation -26.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds