Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.46904 * 2 1 4 4 C 1.46843 * 110.99995 * 169.99834 * 3 2 1 5 5 C 1.53045 * 109.52325 * 185.83769 * 4 3 2 6 6 C 1.53126 * 109.27519 * 300.81950 * 5 4 3 7 7 N 1.46898 * 109.51890 * 177.55846 * 6 5 4 8 8 C 1.46904 * 110.99959 * 155.00011 * 7 6 5 9 9 C 1.50699 * 109.46880 * 180.02562 * 8 7 6 10 10 C 1.34235 * 126.49813 * 260.01963 * 9 8 7 11 11 N 1.36835 * 109.92997 * 180.02562 * 10 9 8 12 12 C 1.46497 * 125.06450 * 179.74136 * 11 10 9 13 13 C 1.50698 * 109.47017 * 265.02050 * 12 11 10 14 14 H 1.08003 * 120.00067 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00117 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99997 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99823 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47202 * 89.99872 * 17 15 13 19 19 H 1.48503 * 109.47049 * 209.99656 * 17 15 13 20 20 H 1.48498 * 109.47330 * 330.00069 * 17 15 13 21 21 C 1.37681 * 109.87094 * 0.02562 * 11 10 9 22 22 C 1.39133 * 133.50631 * 179.97438 * 21 11 10 23 23 C 1.37740 * 119.77988 * 179.97438 * 22 21 11 24 24 C 1.38832 * 120.66938 * 0.04294 * 23 22 21 25 25 C 1.36624 * 120.52378 * 359.97438 * 24 23 22 26 26 C 1.39626 * 119.76783 * 0.02562 * 25 24 23 27 27 C 1.53117 * 109.15864 * 57.65469 * 6 5 4 28 28 C 1.46851 * 110.99858 * 294.20552 * 3 2 1 29 29 H 1.09001 * 109.47837 * 300.00123 * 1 2 3 30 30 H 1.09006 * 109.47312 * 60.00310 * 1 2 3 31 31 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47454 * 240.00196 * 2 1 3 33 33 H 1.08999 * 109.46986 * 119.99476 * 2 1 3 34 34 H 1.09001 * 109.46096 * 65.82235 * 4 3 2 35 35 H 1.08995 * 109.46639 * 305.85351 * 4 3 2 36 36 H 1.08999 * 109.50247 * 180.88147 * 5 4 3 37 37 H 1.08994 * 109.50203 * 60.76145 * 5 4 3 38 38 H 1.08997 * 109.52063 * 297.68739 * 6 5 4 39 39 H 1.00895 * 110.99973 * 278.95763 * 7 6 5 40 40 H 1.09003 * 109.46741 * 59.99976 * 8 7 6 41 41 H 1.09001 * 109.47136 * 300.00184 * 8 7 6 42 42 H 1.07998 * 125.04096 * 0.02990 * 10 9 8 43 43 H 1.09000 * 109.47142 * 25.02148 * 12 11 10 44 44 H 1.09000 * 109.46982 * 145.02302 * 12 11 10 45 45 H 0.96991 * 119.99781 * 180.02562 * 16 15 13 46 46 H 1.08004 * 120.10731 * 0.02562 * 22 21 11 47 47 H 1.08006 * 119.66468 * 180.02562 * 23 22 21 48 48 H 1.07998 * 119.74050 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.11563 * 179.97438 * 25 24 23 50 50 H 1.09000 * 109.50058 * 62.28676 * 27 6 5 51 51 H 1.09003 * 109.50175 * 182.39910 * 27 6 5 52 52 H 1.08991 * 109.46346 * 294.18109 * 28 3 2 53 53 H 1.09005 * 109.45746 * 54.15788 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4312 0.2381 5 6 3.9173 2.8877 0.3762 6 6 3.5674 3.6484 -0.9059 7 7 3.9436 5.0605 -0.7568 8 6 4.1901 5.6806 -2.0656 9 6 4.5732 7.1253 -1.8727 10 6 3.7691 8.1905 -2.0162 11 7 4.4668 9.3394 -1.7601 12 6 3.9116 10.6935 -1.8254 13 6 4.1948 11.2876 -3.1811 14 1 4.7341 10.7137 -3.9203 15 6 3.7646 12.5635 -3.4783 16 7 4.0113 13.0817 -4.6615 17 14 2.8313 13.5557 -2.2001 18 1 3.7926 14.3379 -1.3819 19 1 1.8926 14.4828 -2.8818 20 1 2.0668 12.6355 -1.3204 21 6 5.7700 9.0336 -1.4380 22 6 6.8787 9.8028 -1.0989 23 6 8.0796 9.1875 -0.8226 24 6 8.1968 7.8053 -0.8798 25 6 7.1212 7.0308 -1.2110 26 6 5.8941 7.6336 -1.4949 27 6 2.0606 3.5439 -1.1568 28 6 1.6650 2.0685 -1.2505 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9886 0.9683 -0.6002 35 1 3.7027 0.8903 1.1547 36 1 4.9948 2.9223 0.5373 37 1 3.4072 3.3471 1.2227 38 1 4.1086 3.2139 -1.7463 39 1 3.2407 5.5695 -0.2422 40 1 3.2860 5.6218 -2.6716 41 1 5.0005 5.1544 -2.5700 42 1 2.7260 8.1473 -2.2927 43 1 2.8343 10.6526 -1.6645 44 1 4.3710 11.3121 -1.0545 45 1 3.7089 13.9793 -4.8704 46 1 6.7976 10.8788 -1.0516 47 1 8.9390 9.7864 -0.5592 48 1 9.1458 7.3386 -0.6607 49 1 7.2199 5.9562 -1.2538 50 1 1.5213 4.0138 -0.3343 51 1 1.8114 4.0475 -2.0909 52 1 2.1942 1.6027 -2.0816 53 1 0.5902 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009834801.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = 56.486468 kcal Electronic energy + Delta-G solvation = -29230.734317 eV Core-core repulsion = 25487.937599 eV Total energy + Delta-G solvation = -3742.796718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.66272 -39.52238 -36.59467 -36.31457 -33.80632 -32.86543 -31.62693 -30.99319 -29.79027 -29.53837 -28.27759 -27.30295 -24.83443 -23.67492 -23.00714 -22.55599 -21.76500 -21.45217 -20.55447 -20.02925 -18.83745 -17.14518 -16.68027 -16.08958 -15.90042 -15.55474 -15.10222 -15.01655 -14.79219 -14.59084 -14.45223 -14.09947 -13.91187 -13.54993 -13.38021 -13.23352 -13.16299 -12.75300 -12.68953 -12.57083 -12.23126 -12.17027 -12.02428 -11.75640 -11.67677 -11.43377 -11.39654 -11.39170 -11.14097 -10.98679 -10.87711 -10.72642 -10.64362 -10.50759 -10.15195 -10.09500 -9.65936 -8.89453 -8.82197 -8.61262 -8.23198 -7.49954 -6.87246 -6.30735 -4.34476 1.76058 2.28487 3.10855 3.17537 3.19454 3.23679 3.58820 3.75561 4.17170 4.31654 4.54859 4.58011 4.62063 4.80456 4.84481 4.97669 4.98868 5.05898 5.14184 5.18666 5.22742 5.33174 5.34995 5.37322 5.48089 5.49788 5.50545 5.56609 5.57025 5.64331 5.66634 5.78494 5.81416 5.86325 5.87745 5.94865 6.06179 6.12716 6.19047 6.24397 6.38171 6.40431 6.47372 6.49570 6.73755 6.80441 6.83125 7.08054 7.16833 7.20161 7.26095 7.42824 7.49138 7.54810 7.97771 8.02064 8.30967 8.75092 9.25287 10.81642 Molecular weight = 341.22amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.002382 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.159722 B =11751.640174 C =13375.847564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.102 4.102 6 C 0.087 3.913 7 N -0.678 5.678 8 C 0.146 3.854 9 C -0.203 4.203 10 C 0.079 3.921 11 N -0.449 5.449 12 C 0.208 3.792 13 C -0.545 4.545 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.885 5.885 17 Si 0.874 3.126 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.105 3.895 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.159 4.159 25 C -0.071 4.071 26 C -0.092 4.092 27 C -0.147 4.147 28 C 0.058 3.942 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.342 0.658 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.269 0.731 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.073 0.927 51 H 0.066 0.934 52 H 0.031 0.969 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -22.671 9.538 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.072 4.072 5 C -0.141 4.141 6 C -0.023 4.023 7 N -0.307 5.307 8 C 0.018 3.982 9 C -0.211 4.211 10 C -0.052 4.052 11 N -0.126 5.126 12 C 0.089 3.911 13 C -0.583 4.583 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.522 5.522 17 Si 0.700 3.300 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.003 4.003 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.178 4.178 25 C -0.090 4.090 26 C -0.097 4.097 27 C -0.186 4.186 28 C -0.070 4.070 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.174 0.826 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.130 0.870 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.049 0.951 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.423 -22.014 9.882 24.252 hybrid contribution -1.095 0.514 -0.652 1.374 sum -3.517 -21.499 9.230 23.660 Atomic orbital electron populations 1.21813 0.94913 1.01443 1.02572 1.22052 0.96128 0.88979 1.00597 1.61977 1.14117 1.15220 1.35124 1.22111 0.86976 0.97690 1.00415 1.21546 1.01322 0.93142 0.98080 1.21613 0.92986 0.89903 0.97845 1.60629 1.50073 1.01239 1.18791 1.20019 0.98748 0.90126 0.89348 1.19758 0.92811 0.93286 1.15275 1.21556 0.97477 0.84621 1.01548 1.44304 1.07161 1.07199 1.53888 1.20021 0.94790 0.77223 0.99092 1.21238 1.38689 1.00754 0.97579 0.90099 1.24853 0.95265 0.97107 0.95395 1.69877 1.45407 1.16334 1.20608 0.86892 0.80508 0.80778 0.81846 1.19674 1.20565 1.18963 1.18259 0.85932 0.93768 1.02361 1.20111 0.91024 0.99166 1.03013 1.20644 0.96336 0.94580 1.02103 1.20444 0.98220 0.93756 1.05427 1.20064 0.91129 0.98740 0.99056 1.18904 0.93710 0.91668 1.05377 1.22351 0.98044 0.95944 1.02286 1.22058 1.00742 0.94418 0.89831 0.91799 0.92655 0.92416 0.95140 0.90860 0.95086 0.90765 0.90808 0.91078 0.91075 0.83983 0.95172 0.91068 0.82622 0.93895 0.94593 0.92132 0.86381 0.86716 0.87142 0.87002 0.90867 0.91565 0.95084 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.84 37.16 0.37 -0.59 16 2 C 0.05 0.36 5.68 -3.82 -0.02 0.34 16 3 N -0.54 -4.62 4.66 -234.67 -1.09 -5.72 16 4 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 5 C -0.10 -0.95 5.70 -26.64 -0.15 -1.11 16 6 C 0.09 0.86 2.53 -67.59 -0.17 0.69 16 7 N -0.68 -8.10 6.24 -107.86 -0.67 -8.77 16 8 C 0.15 1.96 6.02 -4.97 -0.03 1.93 16 9 C -0.20 -3.47 5.83 -102.71 -0.60 -4.07 16 10 C 0.08 1.45 11.19 -16.73 -0.19 1.26 16 11 N -0.45 -9.58 2.76 -115.71 -0.32 -9.90 16 12 C 0.21 4.80 4.82 -5.20 -0.03 4.78 16 13 C -0.54 -14.89 9.94 -34.44 -0.34 -15.23 16 14 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 17 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 21 C 0.10 2.20 6.81 -83.99 -0.57 1.62 16 22 C -0.11 -2.22 10.00 -39.43 -0.39 -2.61 16 23 C -0.12 -1.97 10.01 -39.54 -0.40 -2.36 16 24 C -0.16 -2.52 9.97 -39.94 -0.40 -2.92 16 25 C -0.07 -1.20 10.05 -39.65 -0.40 -1.60 16 26 C -0.09 -1.73 6.35 -105.14 -0.67 -2.40 16 27 C -0.15 -1.34 5.35 -26.65 -0.14 -1.48 16 28 C 0.06 0.49 5.29 -3.83 -0.02 0.47 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.03 0.22 8.12 -51.93 -0.42 -0.21 16 33 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.56 8.01 -51.93 -0.42 0.14 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 7.80 -51.93 -0.41 0.33 16 39 H 0.34 4.13 8.44 -39.29 -0.33 3.80 16 40 H 0.03 0.38 7.51 -51.93 -0.39 -0.01 16 41 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 42 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 43 H 0.04 0.95 7.17 -51.93 -0.37 0.57 16 44 H 0.04 0.82 7.57 -51.93 -0.39 0.42 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 47 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 49 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 50 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 51 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16 52 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 53 H 0.08 0.61 6.21 -51.93 -0.32 0.28 16 LS Contribution 416.62 15.07 6.28 6.28 Total: -1.00 -29.53 416.62 -13.25 -42.77 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -9.27 Total: 6.08 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -4.27 Total: -20.77 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.31 Total: -49.69 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.53 -13.25 -42.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009834801.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.258 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds