Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 116.99914 * 2 1 4 4 C 1.38575 * 120.07937 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.02489 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90099 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47040 * 89.99880 * 6 5 4 8 8 C 1.46907 * 110.99856 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46764 * 155.00371 * 8 7 6 10 10 C 1.53002 * 109.47254 * 275.00066 * 8 7 6 11 11 C 1.38314 * 120.19261 * 359.97438 * 5 4 3 12 12 C 1.38232 * 120.16023 * 0.02562 * 11 5 4 13 13 Br 1.89099 * 120.01369 * 179.97438 * 12 11 5 14 14 C 1.38837 * 119.96827 * 359.97438 * 12 11 5 15 15 O 1.35818 * 120.09207 * 179.97438 * 14 12 11 16 16 C 1.34802 * 117.00027 * 90.00097 * 15 14 12 17 17 H 1.08001 * 120.00259 * 359.97438 * 16 15 14 18 18 C 1.38640 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31572 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00000 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46918 * 89.99704 * 20 18 16 22 22 H 1.48497 * 109.46921 * 210.00013 * 20 18 16 23 23 H 1.48505 * 109.47112 * 329.99711 * 20 18 16 24 24 H 1.08998 * 109.47167 * 300.00392 * 1 2 3 25 25 H 1.09003 * 109.46943 * 59.99531 * 1 2 3 26 26 H 1.08997 * 109.47695 * 179.97438 * 1 2 3 27 27 H 1.07990 * 119.98958 * 0.24618 * 4 3 2 28 28 H 1.08998 * 109.46814 * 210.00069 * 6 5 4 29 29 H 1.09000 * 109.47053 * 329.99697 * 6 5 4 30 30 H 1.00901 * 111.00443 * 56.04776 * 7 6 5 31 31 H 1.08998 * 109.46932 * 35.00482 * 8 7 6 32 32 H 1.08995 * 109.47463 * 59.99831 * 9 8 7 33 33 H 1.09007 * 109.46786 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47022 * 299.99481 * 9 8 7 35 35 H 1.09008 * 109.46817 * 300.00340 * 10 8 7 36 36 H 1.09001 * 109.46608 * 59.99839 * 10 8 7 37 37 H 1.08994 * 109.46959 * 179.97438 * 10 8 7 38 38 H 1.07996 * 119.91742 * 180.02562 * 11 5 4 39 39 H 0.96999 * 119.99916 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9218 3.6058 0.0011 6 6 1.1000 4.8690 0.0011 7 7 0.8325 5.2791 1.3860 8 6 0.0322 6.5104 1.4252 9 6 -0.7384 6.5759 2.7454 10 6 0.9575 7.7238 1.3140 11 6 3.3029 3.6815 0.0016 12 6 4.0618 2.5261 0.0011 13 35 5.9497 2.6345 0.0011 14 6 3.4373 1.2862 0.0005 15 8 4.1805 0.1494 -0.0005 16 6 4.5159 -0.3637 1.2001 17 1 4.1947 0.1283 2.1064 18 6 5.2730 -1.5228 1.2716 19 7 5.6639 -2.1225 0.1676 20 14 5.7384 -2.2333 2.9354 21 1 4.6895 -3.1872 3.3772 22 1 7.0380 -2.9431 2.8245 23 1 5.8576 -1.1344 3.9272 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2146 2.3193 0.0050 28 1 1.6482 5.6589 -0.5124 29 1 0.1561 4.6884 -0.5132 30 1 1.6920 5.3903 1.9027 31 1 -0.6718 6.5127 0.5931 32 1 -0.0344 6.5735 3.5775 33 1 -1.3326 7.4894 2.7743 34 1 -1.3976 5.7115 2.8246 35 1 1.6615 7.7214 2.1462 36 1 1.5065 7.6770 0.3735 37 1 0.3636 8.6373 1.3426 38 1 3.7895 4.6456 0.0024 39 1 6.1933 -2.9337 0.2177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010435745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -34.791732 kcal Electronic energy + Delta-G solvation = -22009.821008 eV Core-core repulsion = 18579.102121 eV Total energy + Delta-G solvation = -3430.718887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 343.057 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -39.89377 -37.87210 -37.19426 -36.10117 -32.59383 -31.59648 -30.96205 -28.99286 -28.40174 -27.34934 -26.90201 -25.18837 -23.88858 -21.65840 -21.05576 -20.74218 -18.04298 -17.14287 -16.39332 -16.20618 -15.70153 -15.31742 -15.16724 -14.39065 -14.26094 -13.85706 -13.71982 -13.58121 -13.41374 -13.01370 -12.63940 -12.41373 -12.32171 -11.86351 -11.76879 -11.46039 -11.36451 -11.33695 -11.07342 -11.01904 -10.96531 -10.76529 -10.28818 -10.10490 -9.89516 -9.62473 -9.35541 -8.52529 -8.11266 -7.99615 -7.44981 -5.95444 -3.63703 1.56821 1.76917 2.34185 3.33279 3.35697 3.39719 3.83098 3.83488 4.25874 4.40348 4.66234 4.83804 4.93375 5.06174 5.16905 5.19348 5.34572 5.36526 5.38917 5.46549 5.50382 5.57312 5.59606 5.61919 5.65630 5.73155 5.77989 5.87924 5.91855 6.08282 6.34497 6.61786 6.69604 6.76947 6.91664 7.03817 7.28385 7.48684 7.92297 8.39943 9.46899 10.11220 11.23795 Molecular weight = 343.06amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.004265 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.195171 B = 6563.419194 C = 7630.433981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.286 6.286 3 C 0.101 3.899 4 C -0.168 4.168 5 C -0.079 4.079 6 C 0.109 3.891 7 N -0.681 5.681 8 C 0.077 3.923 9 C -0.140 4.140 10 C -0.184 4.184 11 C -0.116 4.116 12 C -0.088 4.088 13 Br -0.036 7.036 14 C 0.143 3.857 15 O -0.215 6.215 16 C -0.353 4.353 17 H 0.066 0.934 18 C 0.035 3.965 19 N -0.881 5.881 20 Si 0.925 3.075 21 H -0.280 1.280 22 H -0.282 1.282 23 H -0.273 1.273 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.345 0.655 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 16.390 0.750 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.198 6.198 3 C 0.054 3.946 4 C -0.188 4.188 5 C -0.080 4.080 6 C -0.020 4.020 7 N -0.312 5.312 8 C -0.033 4.033 9 C -0.197 4.197 10 C -0.243 4.243 11 C -0.136 4.136 12 C -0.168 4.168 13 Br 0.050 6.950 14 C 0.094 3.906 15 O -0.127 6.127 16 C -0.429 4.429 17 H 0.084 0.916 18 C -0.164 4.164 19 N -0.522 5.522 20 Si 0.752 3.248 21 H -0.206 1.206 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.478 15.554 0.604 18.224 hybrid contribution 0.171 0.483 0.651 0.828 sum -9.308 16.036 1.255 18.584 Atomic orbital electron populations 1.23015 0.79951 1.03487 1.00496 1.86362 1.19692 1.25618 1.88162 1.19638 0.91899 0.84666 0.98445 1.20955 0.99557 0.91253 1.07058 1.19186 0.92500 0.93894 1.02463 1.20778 0.98386 0.93108 0.89701 1.60665 1.24561 1.32811 1.13153 1.21578 0.95264 0.87633 0.98827 1.21764 0.99951 1.01389 0.96636 1.22533 1.00470 0.99339 1.01964 1.20619 0.92771 0.96568 1.03691 1.22172 0.91185 0.94779 1.08696 1.96608 1.02399 1.98463 1.97520 1.18242 0.87384 0.88582 0.96418 1.83955 1.66249 1.33248 1.29234 1.20741 1.32957 1.08024 0.81216 0.91620 1.24893 0.97486 0.96101 0.97968 1.70031 1.37255 1.18928 1.25955 0.85963 0.78002 0.79175 0.81700 1.20581 1.20766 1.19786 0.93131 0.93348 0.88610 0.85461 0.94364 0.90443 0.83654 0.90633 0.92680 0.92718 0.92001 0.92316 0.92705 0.92166 0.85969 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.29 -6.08 10.28 -34.04 -0.35 -6.43 16 3 C 0.10 2.12 6.70 -39.06 -0.26 1.85 16 4 C -0.17 -2.79 8.69 -39.45 -0.34 -3.13 16 5 C -0.08 -1.19 5.39 -104.59 -0.56 -1.75 16 6 C 0.11 1.24 5.60 -4.98 -0.03 1.21 16 7 N -0.68 -7.39 6.24 -107.99 -0.67 -8.06 16 8 C 0.08 0.67 3.20 -67.71 -0.22 0.45 16 9 C -0.14 -1.14 9.52 37.16 0.35 -0.78 16 10 C -0.18 -1.41 9.16 37.16 0.34 -1.07 16 11 C -0.12 -1.92 9.43 -39.56 -0.37 -2.29 16 12 C -0.09 -1.82 6.24 -39.36 -0.25 -2.07 16 13 Br -0.04 -0.73 33.12 -68.01 -2.25 -2.98 16 14 C 0.14 3.43 5.60 -38.96 -0.22 3.21 16 15 O -0.21 -6.22 8.81 -14.53 -0.13 -6.35 16 16 C -0.35 -10.31 9.77 30.88 0.30 -10.01 16 17 H 0.07 1.88 7.76 -52.49 -0.41 1.47 16 18 C 0.03 1.02 5.49 -17.51 -0.10 0.93 16 19 N -0.88 -27.40 13.67 55.48 0.76 -26.64 16 20 Si 0.93 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 25 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 26 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.13 1.77 6.30 -52.49 -0.33 1.44 16 28 H 0.04 0.40 7.38 -51.93 -0.38 0.02 16 29 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 30 H 0.34 3.83 8.46 -39.29 -0.33 3.50 16 31 H 0.08 0.63 7.80 -51.93 -0.41 0.23 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.46 8.13 -51.92 -0.42 0.03 16 36 H 0.05 0.43 7.45 -51.93 -0.39 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -33.19 351.27 -8.28 -41.48 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.55 Total: -1.50 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.36 Total: -12.09 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.08 Total: -34.70 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.48 Total: -12.78 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.25 Total: -2.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.19 -8.28 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010435745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds