Wall clock time and date at job start Tue Mar 31 2020 05:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.53519 * 2 1 4 4 C 1.53112 * 109.50696 * 239.90025 * 2 1 3 5 5 C 1.53113 * 109.16458 * 182.40254 * 4 2 1 6 6 H 1.09000 * 109.50223 * 297.70940 * 5 4 2 7 7 C 1.53003 * 109.50541 * 177.59648 * 5 4 2 8 8 C 1.53035 * 109.28186 * 57.65308 * 5 4 2 9 9 N 1.46851 * 109.52140 * 300.82481 * 8 5 4 10 10 C 1.46905 * 110.99869 * 185.83438 * 9 8 5 11 11 C 1.50694 * 109.46822 * 169.64844 * 10 9 8 12 12 N 1.29834 * 118.35331 * 353.27986 * 11 10 9 13 13 C 1.35637 * 121.62639 * 179.76652 * 12 11 10 14 14 C 1.39627 * 121.62253 * 180.23484 * 13 12 11 15 15 C 1.37712 * 119.69447 * 180.23822 * 14 13 12 16 16 C 1.38865 * 120.82651 * 0.02562 * 15 14 13 17 17 C 1.37797 * 120.57385 * 0.02562 * 16 15 14 18 18 C 1.39375 * 119.51339 * 359.97438 * 17 16 15 19 19 C 1.46963 * 121.90186 * 179.97438 * 18 17 16 20 20 O 1.21712 * 121.29161 * 0.02562 * 19 18 17 21 21 N 1.35347 * 117.42156 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.71581 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00238 * 135.90873 * 22 21 19 24 24 C 1.39077 * 120.00087 * 315.90623 * 22 21 19 25 25 N 1.31255 * 119.99892 * 164.70122 * 24 22 21 26 26 Si 1.86795 * 119.99897 * 344.69980 * 24 22 21 27 27 H 1.48498 * 109.47313 * 95.76677 * 26 24 22 28 28 H 1.48503 * 109.47381 * 215.76693 * 26 24 22 29 29 H 1.48505 * 109.47506 * 335.76719 * 26 24 22 30 30 C 1.46850 * 111.19786 * 61.74001 * 9 8 5 31 31 H 1.09003 * 109.46853 * 180.10405 * 1 2 3 32 32 H 1.09000 * 109.47231 * 300.09344 * 1 2 3 33 33 H 1.08992 * 109.47242 * 60.10081 * 1 2 3 34 34 H 1.09007 * 109.52020 * 302.30952 * 4 2 1 35 35 H 1.09005 * 109.52209 * 62.49245 * 4 2 1 36 36 H 1.08999 * 109.47153 * 59.99991 * 7 5 4 37 37 H 1.08998 * 109.47061 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.47028 * 300.00009 * 7 5 4 39 39 H 1.08999 * 109.46641 * 180.80658 * 8 5 4 40 40 H 1.09006 * 109.45179 * 60.82970 * 8 5 4 41 41 H 1.08997 * 109.46857 * 289.64725 * 10 9 8 42 42 H 1.08998 * 109.46644 * 49.64948 * 10 9 8 43 43 H 1.08004 * 120.14976 * 0.21895 * 14 13 12 44 44 H 1.07994 * 119.58613 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.71831 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.24517 * 180.02562 * 17 16 15 47 47 H 0.97002 * 119.99985 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.45879 * 178.24509 * 30 9 8 49 49 H 1.08993 * 109.45287 * 58.26806 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2486 5 6 3.5712 -0.7719 -1.2107 6 1 3.9677 0.2433 -1.2298 7 6 4.0882 -1.5460 -2.4249 8 6 4.0231 -1.4728 0.0725 9 7 3.5093 -0.7419 1.2379 10 6 4.0373 -1.3056 2.4875 11 6 3.7003 -0.3880 3.6344 12 7 3.1550 0.7594 3.3662 13 6 2.8203 1.6344 4.3471 14 6 2.2295 2.8662 4.0590 15 6 1.9103 3.7266 5.0858 16 6 2.1692 3.3851 6.4067 17 6 2.7525 2.1758 6.7166 18 6 3.0833 1.2905 5.6923 19 6 3.7074 -0.0122 5.9630 20 8 3.9596 -0.3685 7.0991 21 7 3.9910 -0.8004 4.8999 22 6 4.5741 -2.0253 5.0984 23 1 4.2137 -2.8888 4.5589 24 6 5.6297 -2.1560 5.9944 25 7 5.9911 -3.3461 6.4136 26 14 6.5330 -0.6378 6.6012 27 1 5.9651 -0.2121 7.9056 28 1 7.9745 -0.9532 6.7682 29 1 6.3777 0.4591 5.6121 30 6 2.0410 -0.7234 1.2481 31 1 -0.3633 -1.0277 0.0019 32 1 -0.3634 0.5153 0.8891 33 1 -0.3633 0.5122 -0.8908 34 1 1.6453 -1.7392 -1.2688 35 1 1.7156 -0.1871 -2.1398 36 1 3.7632 -1.0483 -3.3385 37 1 5.1774 -1.5795 -2.3975 38 1 3.6925 -2.5614 -2.4038 39 1 5.1122 -1.4960 0.1095 40 1 3.6374 -2.4923 0.0843 41 1 3.5904 -2.2844 2.6619 42 1 5.1197 -1.4088 2.4107 43 1 2.0240 3.1431 3.0355 44 1 1.4537 4.6791 4.8609 45 1 1.9119 4.0737 7.1980 46 1 2.9510 1.9155 7.7458 47 1 6.7271 -3.4372 7.0389 48 1 1.6905 -0.2021 2.1390 49 1 1.6651 -1.7464 1.2544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010897342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:28 Heat of formation + Delta-G solvation = 19.347510 kcal Electronic energy + Delta-G solvation = -31049.943069 eV Core-core repulsion = 27169.702790 eV Total energy + Delta-G solvation = -3880.240279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.92755 -39.18057 -37.89364 -36.80947 -34.24411 -33.89738 -33.35499 -32.23455 -30.66572 -29.64652 -27.20738 -26.49593 -26.38773 -25.89502 -23.53316 -22.78725 -21.53778 -20.84369 -20.65908 -19.53529 -18.88413 -18.01703 -17.26627 -16.06949 -15.43528 -15.39342 -15.24395 -14.69107 -14.63753 -14.40535 -14.26276 -14.13841 -13.85468 -13.54376 -13.22861 -12.95739 -12.84468 -12.72900 -12.62241 -12.51367 -12.33191 -12.24399 -11.97413 -11.65537 -11.58333 -11.42435 -11.20945 -11.15276 -10.80855 -10.69831 -10.66944 -10.43103 -10.28413 -10.14809 -10.05830 -9.41952 -9.07666 -8.94873 -8.82847 -8.53111 -7.94104 -7.27054 -6.74369 -4.62857 1.25987 1.39739 2.90888 3.12340 3.22217 3.34809 3.56021 3.63368 4.12242 4.25413 4.56405 4.65801 4.75066 4.86749 4.92824 4.97166 5.11293 5.15968 5.28339 5.36068 5.45029 5.51874 5.54483 5.59540 5.62798 5.66872 5.71872 5.72798 5.77227 5.85907 5.91975 5.93033 5.94704 6.00304 6.03020 6.09381 6.19757 6.26996 6.28503 6.34219 6.44829 6.55371 6.60935 6.61759 6.84501 6.87044 7.15840 7.31589 7.36027 7.42096 7.47429 7.90251 8.23078 8.63376 8.92684 9.05747 10.25535 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004858 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.662889 B = 5761.726457 C = 7843.833011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.088 4.088 6 H 0.079 0.921 7 C -0.145 4.145 8 C 0.061 3.939 9 N -0.517 5.517 10 C 0.124 3.876 11 C 0.370 3.630 12 N -0.529 5.529 13 C 0.167 3.833 14 C -0.125 4.125 15 C -0.087 4.087 16 C -0.170 4.170 17 C -0.041 4.041 18 C -0.213 4.213 19 C 0.493 3.507 20 O -0.513 6.513 21 N -0.371 5.371 22 C -0.379 4.379 23 H 0.119 0.881 24 C 0.103 3.897 25 N -0.828 5.828 26 Si 0.907 3.093 27 H -0.248 1.248 28 H -0.294 1.294 29 H -0.276 1.276 30 C 0.063 3.937 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.285 0.715 48 H 0.093 0.907 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 6.863 -13.164 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.106 4.106 6 H 0.097 0.903 7 C -0.203 4.203 8 C -0.067 4.067 9 N -0.240 5.240 10 C -0.006 4.006 11 C 0.107 3.893 12 N -0.255 5.255 13 C 0.051 3.949 14 C -0.144 4.144 15 C -0.106 4.106 16 C -0.189 4.189 17 C -0.060 4.060 18 C -0.221 4.221 19 C 0.291 3.709 20 O -0.392 6.392 21 N -0.076 5.076 22 C -0.505 4.505 23 H 0.137 0.863 24 C -0.113 4.113 25 N -0.458 5.458 26 Si 0.735 3.265 27 H -0.173 1.173 28 H -0.222 1.222 29 H -0.201 1.201 30 C -0.065 4.065 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.203 7.222 -13.051 16.155 hybrid contribution 0.370 -0.519 1.384 1.524 sum -5.833 6.703 -11.667 14.666 Atomic orbital electron populations 1.21771 0.95543 1.01373 1.01524 1.21098 0.94522 1.00664 0.94079 0.90118 1.21711 0.95071 1.00196 0.97703 1.21131 0.95550 1.00343 0.93615 0.90274 1.21791 1.00986 1.00065 0.97453 1.22134 0.99936 0.94689 0.89962 1.61544 1.08445 1.53480 1.00580 1.20766 1.01658 0.93095 0.85031 1.22860 0.90865 0.90574 0.85007 1.68579 1.23393 1.02050 1.31447 1.18900 0.94299 0.93867 0.87834 1.20645 1.01779 0.92622 0.99382 1.21041 0.98269 0.98715 0.92610 1.20890 1.04189 0.97323 0.96467 1.20932 0.94141 0.92361 0.98612 1.20758 1.09282 0.96674 0.95348 1.18627 0.81214 0.85660 0.85415 1.90664 1.53265 1.74568 1.20666 1.42486 1.43921 1.16704 1.04489 1.19281 1.16990 0.84122 1.30115 0.86321 1.25320 0.95106 0.97820 0.93006 1.69604 1.25853 1.23649 1.26645 0.86324 0.76641 0.81596 0.81892 1.17315 1.22234 1.20074 1.22218 0.86862 0.97907 0.99491 0.93186 0.92538 0.92913 0.92595 0.92323 0.92767 0.92627 0.92937 0.90781 0.95187 0.91924 0.87505 0.85323 0.86176 0.86288 0.85624 0.90477 0.88909 0.96238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.20 37.16 0.34 -1.17 16 2 C -0.08 -1.02 2.88 -90.54 -0.26 -1.28 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.11 -1.15 4.57 -26.61 -0.12 -1.27 16 5 C -0.09 -0.94 2.88 -90.54 -0.26 -1.21 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.15 -1.29 9.20 37.16 0.34 -0.95 16 8 C 0.06 0.77 4.74 -3.83 -0.02 0.75 16 9 N -0.52 -7.88 4.26 -236.11 -1.01 -8.88 16 10 C 0.12 2.19 4.22 -4.98 -0.02 2.17 16 11 C 0.37 7.82 7.02 -154.87 -1.09 6.73 16 12 N -0.53 -10.67 7.50 -8.10 -0.06 -10.73 16 13 C 0.17 3.37 6.63 -84.50 -0.56 2.81 16 14 C -0.12 -2.06 10.03 -39.26 -0.39 -2.45 16 15 C -0.09 -1.25 10.00 -39.54 -0.40 -1.65 16 16 C -0.17 -2.62 10.02 -39.51 -0.40 -3.02 16 17 C -0.04 -0.79 9.68 -39.32 -0.38 -1.17 16 18 C -0.21 -4.72 5.89 -104.77 -0.62 -5.34 16 19 C 0.49 12.56 5.76 -12.47 -0.07 12.49 16 20 O -0.51 -14.31 12.19 5.18 0.06 -14.24 16 21 N -0.37 -9.09 2.31 -59.56 -0.14 -9.22 16 22 C -0.38 -9.87 8.69 -14.88 -0.13 -10.00 16 23 H 0.12 3.07 7.15 -52.48 -0.38 2.70 16 24 C 0.10 2.81 4.97 -17.49 -0.09 2.72 16 25 N -0.83 -22.85 13.95 55.50 0.77 -22.07 16 26 Si 0.91 23.24 24.54 -169.99 -4.17 19.07 16 27 H -0.25 -6.67 6.35 56.52 0.36 -6.32 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -7.18 7.07 56.52 0.40 -6.78 16 30 C 0.06 0.92 4.34 -3.83 -0.02 0.90 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.11 7.26 -51.93 -0.38 0.73 16 42 H 0.11 1.87 7.98 -51.93 -0.41 1.46 16 43 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.13 2.38 7.83 -52.49 -0.41 1.97 16 47 H 0.28 7.33 8.31 -40.82 -0.34 7.00 16 48 H 0.09 1.56 5.87 -51.93 -0.30 1.26 16 49 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -29.70 380.29 -10.76 -40.46 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.82 Total: 0.81 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.13 Total: -0.92 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.43 Total: -50.91 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.06 Total: -14.24 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.17 Total: 19.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.70 -10.76 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010897342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.810 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds