Wall clock time and date at job start Tue Mar 31 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.53519 * 2 1 4 4 C 1.53112 * 109.50696 * 239.90025 * 2 1 3 5 5 C 1.53113 * 109.16458 * 182.40254 * 4 2 1 6 6 H 1.09000 * 109.50223 * 297.70940 * 5 4 2 7 7 C 1.53003 * 109.50541 * 177.59648 * 5 4 2 8 8 C 1.53035 * 109.28186 * 57.65308 * 5 4 2 9 9 N 1.46851 * 109.52140 * 300.82481 * 8 5 4 10 10 C 1.46905 * 110.99869 * 185.83438 * 9 8 5 11 11 C 1.50694 * 109.46822 * 169.64844 * 10 9 8 12 12 N 1.29834 * 118.35331 * 353.27986 * 11 10 9 13 13 C 1.35637 * 121.62639 * 179.76652 * 12 11 10 14 14 C 1.39627 * 121.62253 * 180.23484 * 13 12 11 15 15 C 1.37712 * 119.69447 * 180.23822 * 14 13 12 16 16 C 1.38865 * 120.82651 * 0.02562 * 15 14 13 17 17 C 1.37797 * 120.57385 * 0.02562 * 16 15 14 18 18 C 1.39375 * 119.51339 * 359.97438 * 17 16 15 19 19 C 1.46963 * 121.90186 * 179.97438 * 18 17 16 20 20 O 1.21712 * 121.29161 * 0.02562 * 19 18 17 21 21 N 1.35347 * 117.42156 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.71581 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00238 * 135.90873 * 22 21 19 24 24 C 1.39077 * 120.00087 * 315.90623 * 22 21 19 25 25 N 1.31255 * 119.99892 * 164.70122 * 24 22 21 26 26 Si 1.86795 * 119.99897 * 344.69980 * 24 22 21 27 27 H 1.48498 * 109.47313 * 95.76677 * 26 24 22 28 28 H 1.48503 * 109.47381 * 215.76693 * 26 24 22 29 29 H 1.48505 * 109.47506 * 335.76719 * 26 24 22 30 30 C 1.46850 * 111.19786 * 61.74001 * 9 8 5 31 31 H 1.09003 * 109.46853 * 180.10405 * 1 2 3 32 32 H 1.09000 * 109.47231 * 300.09344 * 1 2 3 33 33 H 1.08992 * 109.47242 * 60.10081 * 1 2 3 34 34 H 1.09007 * 109.52020 * 302.30952 * 4 2 1 35 35 H 1.09005 * 109.52209 * 62.49245 * 4 2 1 36 36 H 1.08999 * 109.47153 * 59.99991 * 7 5 4 37 37 H 1.08998 * 109.47061 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.47028 * 300.00009 * 7 5 4 39 39 H 1.08999 * 109.46641 * 180.80658 * 8 5 4 40 40 H 1.09006 * 109.45179 * 60.82970 * 8 5 4 41 41 H 1.08997 * 109.46857 * 289.64725 * 10 9 8 42 42 H 1.08998 * 109.46644 * 49.64948 * 10 9 8 43 43 H 1.08004 * 120.14976 * 0.21895 * 14 13 12 44 44 H 1.07994 * 119.58613 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.71831 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.24517 * 180.02562 * 17 16 15 47 47 H 0.97002 * 119.99985 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.45879 * 178.24509 * 30 9 8 49 49 H 1.08993 * 109.45287 * 58.26806 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2486 5 6 3.5712 -0.7719 -1.2107 6 1 3.9677 0.2433 -1.2298 7 6 4.0882 -1.5460 -2.4249 8 6 4.0231 -1.4728 0.0725 9 7 3.5093 -0.7419 1.2379 10 6 4.0373 -1.3056 2.4875 11 6 3.7003 -0.3880 3.6344 12 7 3.1550 0.7594 3.3662 13 6 2.8203 1.6344 4.3471 14 6 2.2295 2.8662 4.0590 15 6 1.9103 3.7266 5.0858 16 6 2.1692 3.3851 6.4067 17 6 2.7525 2.1758 6.7166 18 6 3.0833 1.2905 5.6923 19 6 3.7074 -0.0122 5.9630 20 8 3.9596 -0.3685 7.0991 21 7 3.9910 -0.8004 4.8999 22 6 4.5741 -2.0253 5.0984 23 1 4.2137 -2.8888 4.5589 24 6 5.6297 -2.1560 5.9944 25 7 5.9911 -3.3461 6.4136 26 14 6.5330 -0.6378 6.6012 27 1 5.9651 -0.2121 7.9056 28 1 7.9745 -0.9532 6.7682 29 1 6.3777 0.4591 5.6121 30 6 2.0410 -0.7234 1.2481 31 1 -0.3633 -1.0277 0.0019 32 1 -0.3634 0.5153 0.8891 33 1 -0.3633 0.5122 -0.8908 34 1 1.6453 -1.7392 -1.2688 35 1 1.7156 -0.1871 -2.1398 36 1 3.7632 -1.0483 -3.3385 37 1 5.1774 -1.5795 -2.3975 38 1 3.6925 -2.5614 -2.4038 39 1 5.1122 -1.4960 0.1095 40 1 3.6374 -2.4923 0.0843 41 1 3.5904 -2.2844 2.6619 42 1 5.1197 -1.4088 2.4107 43 1 2.0240 3.1431 3.0355 44 1 1.4537 4.6791 4.8609 45 1 1.9119 4.0737 7.1980 46 1 2.9510 1.9155 7.7458 47 1 6.7271 -3.4372 7.0389 48 1 1.6905 -0.2021 2.1390 49 1 1.6651 -1.7464 1.2544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010897342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:27 Heat of formation + Delta-G solvation = 2.848683 kcal Electronic energy + Delta-G solvation = -31050.658512 eV Core-core repulsion = 27169.702790 eV Total energy + Delta-G solvation = -3880.955722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.63679 -40.30465 -39.46254 -38.48349 -35.78626 -35.32735 -34.29440 -34.10503 -32.15492 -31.11652 -28.51992 -27.75292 -27.40472 -27.34410 -25.03584 -24.30344 -22.94197 -22.32538 -21.59041 -20.74498 -20.49222 -19.68034 -18.87678 -17.92962 -17.04135 -16.76622 -16.46830 -16.19012 -16.02251 -15.78164 -15.48628 -15.30989 -15.26723 -15.06406 -14.94731 -14.69861 -14.51977 -13.91511 -13.87793 -13.54713 -13.48410 -13.39940 -13.18975 -12.90576 -12.77535 -12.69123 -12.63899 -12.52591 -12.43387 -12.17819 -12.07713 -11.60293 -11.39487 -11.36323 -11.12016 -11.01572 -10.95174 -10.70737 -10.58029 -10.01688 -9.18351 -8.92228 -8.75288 -6.67832 -0.28039 -0.11313 1.03941 1.13060 1.25646 1.33045 1.88907 1.94818 2.14838 2.66130 2.97014 3.08847 3.17700 3.57033 3.79887 3.86052 3.97431 4.01421 4.08780 4.15078 4.24416 4.35604 4.38523 4.47783 4.50402 4.58060 4.59740 4.72051 4.76870 4.77036 4.85003 4.90852 4.93024 4.96640 5.04320 5.08776 5.14918 5.19053 5.22574 5.28998 5.32779 5.39885 5.45345 5.47456 5.48810 5.53582 5.55564 5.68354 5.88302 6.06338 6.10545 6.28462 6.32989 6.66766 7.14251 7.22642 8.24899 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004858 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.662889 B = 5761.726457 C = 7843.833011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.073 0.927 4 C -0.105 4.105 5 C -0.083 4.083 6 H 0.073 0.927 7 C -0.140 4.140 8 C 0.058 3.942 9 N -0.519 5.519 10 C 0.130 3.870 11 C 0.363 3.637 12 N -0.509 5.509 13 C 0.136 3.864 14 C -0.117 4.117 15 C -0.065 4.065 16 C -0.140 4.140 17 C -0.069 4.069 18 C -0.238 4.238 19 C 0.474 3.526 20 O -0.558 6.558 21 N -0.389 5.389 22 C -0.381 4.381 23 H 0.109 0.891 24 C 0.074 3.926 25 N -0.863 5.863 26 Si 0.946 3.054 27 H -0.274 1.274 28 H -0.276 1.276 29 H -0.287 1.287 30 C 0.065 3.935 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.155 0.845 44 H 0.176 0.824 45 H 0.163 0.837 46 H 0.116 0.884 47 H 0.288 0.712 48 H 0.068 0.932 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 10.425 -15.835 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.142 4.142 5 C -0.101 4.101 6 H 0.091 0.909 7 C -0.198 4.198 8 C -0.070 4.070 9 N -0.243 5.243 10 C 0.000 4.000 11 C 0.099 3.901 12 N -0.233 5.233 13 C 0.023 3.977 14 C -0.136 4.136 15 C -0.085 4.085 16 C -0.158 4.158 17 C -0.089 4.089 18 C -0.244 4.244 19 C 0.273 3.727 20 O -0.441 6.441 21 N -0.096 5.096 22 C -0.508 4.508 23 H 0.127 0.873 24 C -0.138 4.138 25 N -0.495 5.495 26 Si 0.776 3.224 27 H -0.201 1.201 28 H -0.203 1.203 29 H -0.213 1.213 30 C -0.063 4.063 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.173 0.827 44 H 0.194 0.806 45 H 0.180 0.820 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -8.063 10.829 -15.780 20.767 hybrid contribution 0.696 -1.290 2.146 2.599 sum -7.368 9.539 -13.634 18.197 Atomic orbital electron populations 1.21737 0.94252 1.01663 1.02109 1.21054 0.95525 0.99849 0.93340 0.90895 1.21689 0.94632 1.00342 0.97541 1.21105 0.95902 0.99981 0.93149 0.90882 1.21746 1.01114 0.99992 0.96921 1.22269 1.00073 0.94819 0.89814 1.61602 1.08927 1.53693 1.00109 1.20711 1.01589 0.92249 0.85453 1.23438 0.90269 0.91595 0.84768 1.68666 1.21599 1.01573 1.31469 1.19397 0.95777 0.95559 0.87008 1.21071 1.00039 0.90923 1.01588 1.21673 0.95673 0.99929 0.91179 1.21443 1.00307 0.95597 0.98488 1.21103 0.96164 0.93917 0.97732 1.20896 1.10379 0.95917 0.97257 1.19288 0.81210 0.87068 0.85132 1.90603 1.55589 1.75800 1.22092 1.42517 1.45092 1.16495 1.05518 1.19165 1.16782 0.84882 1.29925 0.87327 1.25692 0.95874 0.98661 0.93555 1.69630 1.27266 1.24174 1.28419 0.85731 0.76831 0.80014 0.79833 1.20110 1.20312 1.21302 1.22196 0.86410 0.97696 1.00006 0.93073 0.93296 0.90959 0.92427 0.90357 0.91332 0.92431 0.92711 0.90643 0.95091 0.92523 0.87684 0.82708 0.80633 0.81982 0.86560 0.90146 0.91414 0.96711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.20 71.98 0.66 -1.95 16 2 C -0.08 -1.74 2.88 -10.74 -0.03 -1.77 16 3 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.10 -1.92 4.57 30.67 0.14 -1.78 16 5 C -0.08 -1.61 2.88 -10.74 -0.03 -1.64 16 6 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 7 C -0.14 -2.13 9.20 71.98 0.66 -1.47 16 8 C 0.06 1.41 4.74 86.32 0.41 1.82 16 9 N -0.52 -15.79 4.26 -900.91 -3.84 -19.63 16 10 C 0.13 4.77 4.22 85.55 0.36 5.13 16 11 C 0.36 15.90 7.02 137.93 0.97 16.87 16 12 N -0.51 -20.54 7.50 -179.54 -1.35 -21.89 16 13 C 0.14 5.37 6.63 39.65 0.26 5.64 16 14 C -0.12 -3.39 10.03 22.48 0.23 -3.17 16 15 C -0.07 -1.49 10.00 22.30 0.22 -1.27 16 16 C -0.14 -3.69 10.02 22.32 0.22 -3.47 16 17 C -0.07 -2.60 9.68 22.44 0.22 -2.39 16 18 C -0.24 -10.67 5.89 -19.96 -0.12 -10.79 16 19 C 0.47 25.37 5.76 86.44 0.50 25.87 16 20 O -0.56 -33.13 12.19 -4.39 -0.05 -33.19 16 21 N -0.39 -20.07 2.31 -460.24 -1.06 -21.13 16 22 C -0.38 -21.08 8.69 84.07 0.73 -20.35 16 23 H 0.11 6.04 7.15 -2.91 -0.02 6.01 16 24 C 0.07 4.24 4.97 84.98 0.42 4.66 16 25 N -0.86 -50.06 13.95 21.68 0.30 -49.75 16 26 Si 0.95 50.46 24.54 68.60 1.68 52.14 16 27 H -0.27 -15.64 6.35 99.48 0.63 -15.00 16 28 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.29 -15.53 7.07 99.48 0.70 -14.83 16 30 C 0.06 1.86 4.34 86.33 0.37 2.24 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 40 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 2.14 7.26 -2.39 -0.02 2.12 16 42 H 0.11 3.86 7.98 -2.39 -0.02 3.84 16 43 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 46 H 0.12 4.50 7.83 -2.91 -0.02 4.48 16 47 H 0.29 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.07 2.28 5.87 -2.38 -0.01 2.27 16 49 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -70.37 380.29 2.74 -67.63 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.86 Total: 13.62 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.20 Total: 12.19 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.95 Total: -112.40 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.19 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.68 Total: 52.14 kcal Total: -70.37 2.74 -67.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010897342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.478 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds