Wall clock time and date at job start Tue Mar 31 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.53716 * 2 1 4 4 C 1.53117 * 109.50105 * 120.10071 * 2 1 3 5 5 C 1.53112 * 109.16504 * 62.28387 * 4 2 1 6 6 H 1.09002 * 109.53811 * 297.69149 * 5 4 2 7 7 C 1.53003 * 109.50697 * 177.59462 * 5 4 2 8 8 C 1.53037 * 109.27960 * 57.65724 * 5 4 2 9 9 N 1.46850 * 109.52109 * 300.82041 * 8 5 4 10 10 C 1.46899 * 111.00141 * 185.83846 * 9 8 5 11 11 C 1.50693 * 109.47190 * 170.00146 * 10 9 8 12 12 N 1.29831 * 118.35200 * 359.97438 * 11 10 9 13 13 C 1.35636 * 121.62621 * 180.02562 * 12 11 10 14 14 C 1.39623 * 121.61350 * 179.97438 * 13 12 11 15 15 C 1.37715 * 119.69348 * 180.02562 * 14 13 12 16 16 C 1.38874 * 120.82348 * 0.02562 * 15 14 13 17 17 C 1.37792 * 120.57280 * 359.97438 * 16 15 14 18 18 C 1.39366 * 119.52036 * 0.02562 * 17 16 15 19 19 C 1.46966 * 121.92020 * 179.97438 * 18 17 16 20 20 O 1.21722 * 121.28473 * 0.02562 * 19 18 17 21 21 N 1.35339 * 117.42868 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.71757 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00383 * 138.81227 * 22 21 19 24 24 C 1.39076 * 119.99770 * 318.82292 * 22 21 19 25 25 N 1.31263 * 119.99932 * 340.41189 * 24 22 21 26 26 Si 1.86796 * 120.00269 * 160.42002 * 24 22 21 27 27 H 1.48500 * 109.47649 * 94.77513 * 26 24 22 28 28 H 1.48500 * 109.47411 * 214.77796 * 26 24 22 29 29 H 1.48507 * 109.46909 * 334.77492 * 26 24 22 30 30 C 1.46844 * 111.19581 * 61.73983 * 9 8 5 31 31 H 1.08997 * 109.47517 * 299.90128 * 1 2 3 32 32 H 1.09001 * 109.47101 * 59.90323 * 1 2 3 33 33 H 1.09005 * 109.47604 * 179.90276 * 1 2 3 34 34 H 1.09006 * 109.52092 * 302.37850 * 4 2 1 35 35 H 1.09003 * 109.52478 * 182.19393 * 4 2 1 36 36 H 1.09001 * 109.46935 * 300.20310 * 7 5 4 37 37 H 1.09007 * 109.46477 * 60.19469 * 7 5 4 38 38 H 1.08999 * 109.47670 * 180.19455 * 7 5 4 39 39 H 1.08997 * 109.46622 * 180.80411 * 8 5 4 40 40 H 1.09002 * 109.45226 * 60.82693 * 8 5 4 41 41 H 1.09002 * 109.47019 * 49.99579 * 10 9 8 42 42 H 1.09006 * 109.46833 * 290.00334 * 10 9 8 43 43 H 1.07997 * 120.15527 * 0.30310 * 14 13 12 44 44 H 1.08000 * 119.58947 * 179.97438 * 15 14 13 45 45 H 1.08003 * 119.71244 * 180.02562 * 16 15 14 46 46 H 1.08000 * 120.24153 * 180.02562 * 17 16 15 47 47 H 0.96997 * 120.00334 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.46537 * 58.27694 * 30 9 8 49 49 H 1.09009 * 109.46268 * 178.24044 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0411 -0.7239 1.2487 5 6 1.5748 -2.1818 1.2108 6 1 0.4856 -2.2167 1.2302 7 6 2.1315 -2.9280 2.4250 8 6 2.0845 -2.8421 -0.0723 9 7 1.5675 -2.1136 -1.2379 10 6 1.9222 -2.7997 -2.4874 11 6 1.1767 -2.1697 -3.6355 12 7 0.3788 -1.1774 -3.3821 13 6 -0.3250 -0.5618 -4.3647 14 6 -1.1834 0.5050 -4.0919 15 6 -1.8793 1.1008 -5.1201 16 6 -1.7390 0.6536 -6.4273 17 6 -0.8980 -0.3974 -6.7220 18 6 -0.1845 -1.0144 -5.6961 19 6 0.7262 -2.1395 -5.9505 20 8 0.8923 -2.5766 -7.0744 21 7 1.3730 -2.6708 -4.8871 22 6 2.2334 -3.7223 -5.0708 23 1 3.1722 -3.7515 -4.5377 24 6 1.8972 -4.7515 -5.9437 25 7 0.6449 -4.9337 -6.2922 26 14 3.2278 -5.8745 -6.6203 27 1 3.3238 -7.0927 -5.7764 28 1 2.8873 -6.2625 -8.0127 29 1 4.5302 -5.1611 -6.6096 30 6 2.0409 -0.7236 -1.2480 31 1 -0.3634 0.5123 0.8908 32 1 -0.3633 0.5153 -0.8891 33 1 -0.3634 -1.0277 -0.0017 34 1 1.6441 -0.2375 2.1398 35 1 3.1304 -0.6902 1.2690 36 1 3.2208 -2.8914 2.4059 37 1 1.7682 -2.4572 3.3386 38 1 1.8022 -3.9666 2.3957 39 1 1.7422 -3.8762 -0.1093 40 1 3.1742 -2.8195 -0.0840 41 1 1.6519 -3.8530 -2.4129 42 1 2.9951 -2.7112 -2.6585 43 1 -1.2977 0.8642 -3.0798 44 1 -2.5432 1.9256 -4.9071 45 1 -2.2931 1.1343 -7.2200 46 1 -0.7926 -0.7406 -7.7406 47 1 0.4103 -5.6517 -6.9007 48 1 3.1308 -0.7111 -1.2544 49 1 1.6669 -0.2190 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010897345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:33 Heat of formation + Delta-G solvation = 20.386290 kcal Electronic energy + Delta-G solvation = -31194.207157 eV Core-core repulsion = 27314.011923 eV Total energy + Delta-G solvation = -3880.195234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.52060 -39.20155 -37.57351 -36.37245 -34.07389 -33.72244 -32.89110 -31.86013 -30.35024 -29.34943 -26.92772 -26.44616 -26.35443 -25.77060 -23.31891 -22.76060 -21.73351 -21.00229 -20.56052 -18.74535 -18.49008 -17.78965 -16.87081 -15.66923 -15.47253 -15.07778 -15.02204 -14.67975 -14.47121 -14.19401 -14.00398 -13.86883 -13.73906 -13.66018 -13.15980 -12.90284 -12.69437 -12.54148 -12.32921 -12.23505 -11.91336 -11.80816 -11.63706 -11.39163 -11.32217 -11.21915 -11.12099 -11.02492 -10.92295 -10.70144 -10.61313 -10.51015 -10.31468 -10.07536 -9.86150 -9.48408 -8.90195 -8.66075 -8.34141 -8.31666 -7.82140 -7.00681 -6.67332 -4.51777 1.53647 1.69718 3.02733 3.12499 3.16017 3.26526 3.72857 3.93808 4.06751 4.51901 4.70226 4.84340 4.90079 4.97325 5.05369 5.18229 5.29407 5.40144 5.48066 5.49795 5.55951 5.61503 5.64548 5.71212 5.76363 5.79190 5.84586 5.89405 5.92633 6.00413 6.03623 6.12382 6.14270 6.20365 6.23839 6.25033 6.33213 6.46758 6.48431 6.52558 6.65467 6.78588 6.84274 6.90955 7.05382 7.09487 7.17724 7.42968 7.54500 7.58004 7.63084 8.14243 8.48402 8.73806 9.22230 9.53453 10.33790 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.005117 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.499032 B = 5471.036742 C = 8199.738391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.088 4.088 6 H 0.082 0.918 7 C -0.145 4.145 8 C 0.061 3.939 9 N -0.512 5.512 10 C 0.125 3.875 11 C 0.363 3.637 12 N -0.540 5.540 13 C 0.167 3.833 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.177 4.177 17 C -0.039 4.039 18 C -0.210 4.210 19 C 0.519 3.481 20 O -0.504 6.504 21 N -0.352 5.352 22 C -0.385 4.385 23 H 0.106 0.894 24 C 0.080 3.920 25 N -0.798 5.798 26 Si 0.927 3.073 27 H -0.274 1.274 28 H -0.277 1.277 29 H -0.264 1.264 30 C 0.058 3.942 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.280 0.720 48 H 0.014 0.986 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 6.373 12.159 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.203 4.203 8 C -0.067 4.067 9 N -0.236 5.236 10 C -0.004 4.004 11 C 0.100 3.900 12 N -0.267 5.267 13 C 0.051 3.949 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.197 4.197 17 C -0.058 4.058 18 C -0.218 4.218 19 C 0.314 3.686 20 O -0.378 6.378 21 N -0.055 5.055 22 C -0.512 4.512 23 H 0.123 0.877 24 C -0.137 4.137 25 N -0.426 5.426 26 Si 0.751 3.249 27 H -0.199 1.199 28 H -0.202 1.202 29 H -0.188 1.188 30 C -0.070 4.070 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.032 0.968 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.331 6.273 12.001 13.545 hybrid contribution 1.406 -0.910 -1.372 2.165 sum 1.737 5.363 10.629 12.031 Atomic orbital electron populations 1.21651 0.94186 1.02897 0.99934 1.21088 0.97243 0.97836 0.94039 0.91913 1.21688 0.99817 0.95381 0.97889 1.21168 1.01450 0.94574 0.93526 0.89975 1.21802 1.00733 1.00202 0.97593 1.22129 0.96637 0.97750 0.90221 1.61527 1.59749 1.01865 1.00417 1.20716 0.96042 0.98205 0.85419 1.22702 0.91238 0.90913 0.85151 1.68488 1.13744 1.13615 1.30897 1.18862 0.93789 0.94103 0.88128 1.20580 0.98568 0.96824 0.99034 1.20964 0.98431 0.98907 0.92759 1.20818 1.02597 0.99720 0.96521 1.20872 0.93018 0.93473 0.98459 1.20854 1.04213 1.01417 0.95295 1.18200 0.82676 0.82870 0.84865 1.90662 1.63693 1.61581 1.21816 1.42259 1.33211 1.25435 1.04597 1.19547 1.00575 0.99222 1.31819 0.87655 1.25392 0.96338 0.96749 0.95266 1.69812 1.17397 1.28053 1.27296 0.85953 0.80836 0.79261 0.78832 1.19922 1.20161 1.18792 1.22324 0.95312 0.89276 1.00081 0.94822 0.92553 0.91124 0.92415 0.92819 0.93064 0.92822 0.92698 0.90943 0.95482 0.87754 0.92863 0.85807 0.86630 0.86748 0.86036 0.90988 0.96760 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.75 37.16 0.33 -1.35 16 2 C -0.08 -1.04 3.21 -90.54 -0.29 -1.33 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.20 4.79 -26.61 -0.13 -1.33 16 5 C -0.09 -0.99 2.53 -90.54 -0.23 -1.21 16 6 H 0.08 1.00 6.59 -51.93 -0.34 0.65 16 7 C -0.15 -1.34 9.20 37.16 0.34 -1.00 16 8 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 9 N -0.51 -7.91 3.60 -236.11 -0.85 -8.76 16 10 C 0.13 2.25 4.09 -4.98 -0.02 2.22 16 11 C 0.36 7.89 7.17 -154.87 -1.11 6.78 16 12 N -0.54 -11.23 7.08 -8.10 -0.06 -11.29 16 13 C 0.17 3.57 6.63 -84.50 -0.56 3.01 16 14 C -0.13 -2.32 10.03 -39.26 -0.39 -2.71 16 15 C -0.09 -1.45 10.00 -39.54 -0.40 -1.84 16 16 C -0.18 -3.01 10.02 -39.51 -0.40 -3.41 16 17 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 18 C -0.21 -4.92 5.89 -104.77 -0.62 -5.54 16 19 C 0.52 13.90 6.93 -12.47 -0.09 13.82 16 20 O -0.50 -14.81 14.28 5.17 0.07 -14.73 16 21 N -0.35 -8.83 2.68 -59.56 -0.16 -8.99 16 22 C -0.38 -9.65 8.23 -14.88 -0.12 -9.77 16 23 H 0.11 2.40 7.07 -52.49 -0.37 2.03 16 24 C 0.08 2.05 4.36 -17.48 -0.08 1.97 16 25 N -0.80 -22.10 11.55 55.50 0.64 -21.46 16 26 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 30 C 0.06 0.86 4.48 -3.83 -0.02 0.84 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.02 6.01 -51.93 -0.31 0.71 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 1.90 7.89 -51.93 -0.41 1.49 16 42 H 0.05 0.92 7.57 -51.93 -0.39 0.53 16 43 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 47 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.10 1.81 5.56 -51.92 -0.29 1.52 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -29.57 381.28 -11.39 -40.96 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.57 Total: 5.17 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -4.18 Total: -1.29 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.43 Total: -50.50 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.07 Total: -14.73 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.57 -11.39 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010897345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.342 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds