Wall clock time and date at job start Tue Mar 31 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.50370 * 2 1 4 4 C 1.53124 * 109.50045 * 239.92560 * 2 1 3 5 5 C 1.53113 * 109.15964 * 182.36102 * 4 2 1 6 6 H 1.09004 * 109.50426 * 177.59877 * 5 4 2 7 7 C 1.53000 * 109.53843 * 297.69843 * 5 4 2 8 8 C 1.53036 * 109.27826 * 57.65901 * 5 4 2 9 9 N 1.46850 * 109.52105 * 300.81925 * 8 5 4 10 10 C 1.46901 * 110.99985 * 185.83676 * 9 8 5 11 11 C 1.50696 * 109.47210 * 170.00063 * 10 9 8 12 12 N 1.29831 * 118.35183 * 359.97438 * 11 10 9 13 13 C 1.35634 * 121.62763 * 179.97438 * 12 11 10 14 14 C 1.39624 * 121.61459 * 180.02562 * 13 12 11 15 15 C 1.37709 * 119.69477 * 180.02562 * 14 13 12 16 16 C 1.38874 * 120.82400 * 359.73291 * 15 14 13 17 17 C 1.37800 * 120.56954 * 0.55309 * 16 15 14 18 18 C 1.39364 * 119.52122 * 359.44813 * 17 16 15 19 19 C 1.46962 * 121.91990 * 180.25094 * 18 17 16 20 20 O 1.21722 * 121.28413 * 0.02562 * 19 18 17 21 21 N 1.35343 * 117.42723 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.71289 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99536 * 221.18675 * 22 21 19 24 24 C 1.39070 * 119.99990 * 41.18939 * 22 21 19 25 25 N 1.31255 * 120.00358 * 19.57723 * 24 22 21 26 26 Si 1.86798 * 119.99764 * 199.57923 * 24 22 21 27 27 H 1.48508 * 109.47325 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47426 * 119.99774 * 26 24 22 29 29 H 1.48498 * 109.47433 * 240.00076 * 26 24 22 30 30 C 1.46846 * 111.20047 * 61.74291 * 9 8 5 31 31 H 1.09002 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46873 * 300.06847 * 1 2 3 33 33 H 1.08990 * 109.47224 * 60.07367 * 1 2 3 34 34 H 1.09003 * 109.52205 * 62.46171 * 4 2 1 35 35 H 1.08991 * 109.57758 * 302.30249 * 4 2 1 36 36 H 1.09002 * 109.47441 * 179.82497 * 7 5 4 37 37 H 1.08998 * 109.46895 * 299.82130 * 7 5 4 38 38 H 1.08997 * 109.47246 * 59.82347 * 7 5 4 39 39 H 1.08999 * 109.46361 * 180.80453 * 8 5 4 40 40 H 1.08999 * 109.45854 * 60.82845 * 8 5 4 41 41 H 1.09001 * 109.47073 * 50.00015 * 10 9 8 42 42 H 1.09002 * 109.47546 * 290.00030 * 10 9 8 43 43 H 1.07999 * 120.15651 * 0.10143 * 14 13 12 44 44 H 1.07999 * 119.59318 * 180.02562 * 15 14 13 45 45 H 1.08000 * 119.71859 * 180.28070 * 16 15 14 46 46 H 1.08002 * 120.23994 * 179.72136 * 17 16 15 47 47 H 0.96998 * 120.00190 * 179.97438 * 25 24 22 48 48 H 1.08999 * 109.46110 * 58.27011 * 30 9 8 49 49 H 1.08991 * 109.46430 * 178.24244 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7233 -1.2491 5 6 3.5711 -0.7705 -1.2117 6 1 3.9395 -1.3216 -2.0770 7 6 4.1278 0.6543 -1.2388 8 6 4.0238 -1.4716 0.0711 9 7 3.5101 -0.7412 1.2369 10 6 4.0389 -1.3050 2.4862 11 6 3.6944 -0.3921 3.6346 12 7 3.0253 0.6914 3.3817 13 6 2.6795 1.5596 4.3647 14 6 1.9595 2.7245 4.0925 15 6 1.6298 3.5787 5.1211 16 6 1.9996 3.2938 6.4290 17 6 2.7155 2.1534 6.7223 18 6 3.0593 1.2755 5.6960 19 6 3.8168 0.0420 5.9498 20 8 4.1739 -0.2606 7.0734 21 7 4.1020 -0.7446 4.8859 22 6 4.8060 -1.9067 5.0693 23 1 5.5754 -2.1886 4.3657 24 6 4.5294 -2.7224 6.1611 25 7 3.3826 -2.6109 6.7898 26 14 5.7899 -3.9768 6.7329 27 1 6.9912 -3.9034 5.8630 28 1 6.1772 -3.6850 8.1365 29 1 5.2037 -5.3389 6.6542 30 6 2.0418 -0.7234 1.2477 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5126 -0.8906 34 1 1.7150 -0.1865 -2.1399 35 1 1.6458 -1.7388 -1.2706 36 1 5.2169 0.6196 -1.2090 37 1 3.8052 1.1531 -2.1526 38 1 3.7581 1.2054 -0.3741 39 1 5.1129 -1.4942 0.1077 40 1 3.6388 -2.4913 0.0828 41 1 5.1220 -1.4018 2.4113 42 1 3.5973 -2.2867 2.6574 43 1 1.6615 2.9540 3.0801 44 1 1.0725 4.4791 4.9087 45 1 1.7277 3.9740 7.2225 46 1 3.0043 1.9394 7.7407 47 1 3.1895 -3.1801 7.5511 48 1 1.6662 -1.7466 1.2539 49 1 1.6915 -0.2027 2.1388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010897349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:37 Heat of formation + Delta-G solvation = 19.838511 kcal Electronic energy + Delta-G solvation = -31229.581558 eV Core-core repulsion = 27349.362570 eV Total energy + Delta-G solvation = -3880.218988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.51964 -39.19615 -37.57446 -36.37403 -34.05722 -33.74420 -32.87561 -31.87689 -30.34920 -29.30653 -26.95785 -26.52853 -26.33343 -25.77694 -23.34294 -22.80909 -21.33138 -21.26626 -20.56518 -18.74937 -18.49260 -17.76539 -16.89029 -15.69798 -15.49945 -15.08373 -14.98347 -14.64716 -14.43067 -14.27908 -14.02672 -13.82707 -13.74560 -13.63071 -13.12362 -12.86619 -12.79661 -12.52298 -12.28900 -12.21697 -11.87657 -11.84538 -11.69562 -11.37617 -11.32874 -11.21463 -11.18805 -10.97082 -10.90890 -10.77781 -10.62288 -10.49486 -10.29525 -10.04610 -9.82942 -9.55615 -8.90325 -8.66901 -8.34419 -8.33528 -7.80403 -7.01629 -6.68120 -4.52475 1.53299 1.69448 3.02975 3.12083 3.15719 3.26246 3.73246 3.92668 4.07485 4.51404 4.70047 4.86732 4.89741 5.02326 5.05882 5.15623 5.27948 5.40559 5.44181 5.50297 5.58405 5.65076 5.74774 5.75494 5.79323 5.82262 5.88172 5.89411 5.91830 5.98856 6.05270 6.09787 6.13723 6.17251 6.21608 6.23550 6.31793 6.40591 6.46973 6.57448 6.66569 6.76519 6.79410 6.83851 7.04798 7.09274 7.17364 7.43636 7.54275 7.57744 7.63595 8.13744 8.47992 8.73203 9.21636 9.52977 10.32734 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.005110 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.016202 B = 5478.253789 C = 7792.325189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.085 4.085 6 H 0.065 0.935 7 C -0.139 4.139 8 C 0.059 3.941 9 N -0.513 5.513 10 C 0.124 3.876 11 C 0.364 3.636 12 N -0.543 5.543 13 C 0.167 3.833 14 C -0.130 4.130 15 C -0.091 4.091 16 C -0.177 4.177 17 C -0.039 4.039 18 C -0.210 4.210 19 C 0.520 3.480 20 O -0.503 6.503 21 N -0.352 5.352 22 C -0.384 4.384 23 H 0.107 0.893 24 C 0.079 3.921 25 N -0.800 5.800 26 Si 0.927 3.073 27 H -0.263 1.263 28 H -0.273 1.273 29 H -0.277 1.277 30 C 0.060 3.940 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.279 0.721 48 H 0.016 0.984 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 3.856 -12.498 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.104 4.104 6 H 0.083 0.917 7 C -0.196 4.196 8 C -0.069 4.069 9 N -0.237 5.237 10 C -0.005 4.005 11 C 0.101 3.899 12 N -0.270 5.270 13 C 0.051 3.949 14 C -0.150 4.150 15 C -0.110 4.110 16 C -0.196 4.196 17 C -0.058 4.058 18 C -0.218 4.218 19 C 0.314 3.686 20 O -0.377 6.377 21 N -0.056 5.056 22 C -0.511 4.511 23 H 0.125 0.875 24 C -0.138 4.138 25 N -0.428 5.428 26 Si 0.751 3.249 27 H -0.187 1.187 28 H -0.198 1.198 29 H -0.203 1.203 30 C -0.068 4.068 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.035 0.965 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.738 4.293 -12.297 13.309 hybrid contribution 0.407 -1.647 1.358 2.173 sum -2.331 2.646 -10.939 11.493 Atomic orbital electron populations 1.21776 0.95725 1.01298 1.01450 1.21136 0.94382 1.00808 0.94047 0.89918 1.21690 0.95121 1.00079 0.97947 1.21111 0.95482 0.97360 0.96430 0.91681 1.21753 1.00130 0.95948 1.01784 1.22109 0.99709 0.94539 0.90575 1.61562 1.08694 1.53064 1.00333 1.20709 1.00580 0.93827 0.85427 1.22712 0.88671 0.92220 0.86267 1.68483 1.21829 1.05249 1.31456 1.18864 0.94141 0.93811 0.88077 1.20575 1.01508 0.93847 0.99081 1.20963 0.98786 0.98545 0.92752 1.20821 1.03742 0.98584 0.96491 1.20875 0.94198 0.92387 0.98357 1.20859 1.07007 0.98725 0.95209 1.18202 0.82372 0.82820 0.85201 1.90664 1.52925 1.72669 1.21456 1.42266 1.39527 1.18426 1.05334 1.19608 1.18648 0.98160 1.14653 0.87519 1.25396 0.95510 0.97335 0.95538 1.69813 1.20155 1.35156 1.17636 0.85910 0.80538 0.78825 0.79614 1.18654 1.19849 1.20316 1.22322 0.86631 0.97900 0.99902 0.93286 0.92465 0.93075 0.92427 0.92740 0.93438 0.94068 0.90411 0.91034 0.95393 0.88736 0.91705 0.85792 0.86615 0.86733 0.86025 0.91043 0.96548 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 37.16 0.34 -1.31 16 2 C -0.09 -1.08 2.53 -90.53 -0.23 -1.31 16 3 H 0.08 1.13 6.58 -51.93 -0.34 0.78 16 4 C -0.11 -1.23 4.79 -26.61 -0.13 -1.36 16 5 C -0.09 -0.95 3.21 -90.54 -0.29 -1.24 16 6 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.14 -1.59 8.75 37.16 0.33 -1.27 16 8 C 0.06 0.76 4.90 -3.83 -0.02 0.74 16 9 N -0.51 -7.94 3.61 -236.12 -0.85 -8.79 16 10 C 0.12 2.22 4.09 -4.98 -0.02 2.20 16 11 C 0.36 7.94 7.17 -154.87 -1.11 6.83 16 12 N -0.54 -11.39 7.08 -8.10 -0.06 -11.44 16 13 C 0.17 3.58 6.63 -84.50 -0.56 3.02 16 14 C -0.13 -2.32 10.03 -39.26 -0.39 -2.72 16 15 C -0.09 -1.44 10.00 -39.54 -0.40 -1.84 16 16 C -0.18 -3.01 10.02 -39.51 -0.40 -3.40 16 17 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 18 C -0.21 -4.94 5.89 -104.77 -0.62 -5.56 16 19 C 0.52 13.93 6.93 -12.47 -0.09 13.84 16 20 O -0.50 -14.82 14.28 5.17 0.07 -14.75 16 21 N -0.35 -8.86 2.68 -59.56 -0.16 -9.02 16 22 C -0.38 -9.63 8.23 -14.88 -0.12 -9.75 16 23 H 0.11 2.43 7.07 -52.48 -0.37 2.06 16 24 C 0.08 2.03 4.36 -17.49 -0.08 1.96 16 25 N -0.80 -22.11 11.55 55.50 0.64 -21.47 16 26 Si 0.93 19.67 29.59 -169.99 -5.03 14.64 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 30 C 0.06 0.93 4.33 -3.83 -0.02 0.91 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.05 6.01 -51.93 -0.31 0.74 16 39 H 0.07 0.87 8.02 -51.93 -0.42 0.46 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 1.60 7.43 -51.93 -0.39 1.21 16 42 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 43 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 47 H 0.28 7.25 8.31 -40.82 -0.34 6.92 16 48 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.10 1.90 5.56 -51.93 -0.29 1.61 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -29.63 381.29 -11.39 -41.02 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.57 Total: 5.50 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -4.18 Total: -1.44 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.43 Total: -50.72 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.07 Total: -14.75 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.63 -11.39 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010897349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.857 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds